mRNA_P-wetherbeei_contig20766.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20766.1.1
Unique NamemRNA_P-wetherbeei_contig20766.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20766.1.1 vs. uniprot
Match: Q8QNI1_ESV1K (EsV-1-96 n=2 Tax=root TaxID=1 RepID=Q8QNI1_ESV1K)

HSP 1 Score: 73.2 bits (178), Expect = 1.760e-13
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:   10 KGIKTRPRTELDDIHSLLQQSTIQEEGNVLVLPEKRTVPLTLWGGIFPVGVEVSTPVIRRLLTWPLSTTAACHNCAHTFDGVPVP 264
            + I  R R E DDI S+ + S ++   N + +P     P+ +WG  F    E  T V++  L WPLS    CHNCAH F+GVPVP
Sbjct:    2 RNILHRERVEADDIKSIQRVSNVRVVNNTITIPNTPESPIVVWGRSFH---EDDTDVVKACLQWPLSYDKRCHNCAHFFEGVPVP 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20766.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNI1_ESV1K1.760e-1341.18EsV-1-96 n=2 Tax=root TaxID=1 RepID=Q8QNI1_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20766contigP-wetherbeei_contig20766:721..1206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog654926.Q8QNI1_ESV1K
Model size264
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.88e-14
EggNOG OGs4QF84@10239|Viruses,4QWN2@35237|dsDNA viruses no RNA stage
Ec32 ortholog descriptionEsV-1-96 zinc finger, MYM-type
Ec32 orthologEc-06_005850.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.0187771-CDS-P-wetherbeei_contig20766:720..9001683186208.0187771-CDS-P-wetherbeei_contig20766:720..900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20766 721..900 +
1683186208.0290327-CDS-P-wetherbeei_contig20766:1122..12061683186208.0290327-CDS-P-wetherbeei_contig20766:1122..1206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20766 1123..1206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20766.1.1prot_P-wetherbeei_contig20766.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20766 721..1206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20766.1.1

>prot_P-wetherbeei_contig20766.1.1 ID=prot_P-wetherbeei_contig20766.1.1|Name=mRNA_P-wetherbeei_contig20766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MIRKGIKTRPRTELDDIHSLLQQSTIQEEGNVLVLPEKRTVPLTLWGGIF
PVGVEVSTPVIRRLLTWPLSTTAACHNCAHTFDGVPVP
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mRNA from alignment at P-wetherbeei_contig20766:721..1206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20766.1.1 ID=mRNA_P-wetherbeei_contig20766.1.1|Name=mRNA_P-wetherbeei_contig20766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig20766:721..1206+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATACGAAAGGGCATCAAAACTCGTCCAAGGACAGAACTCGATGACAT
TCATTCACTTCTTCAACAAAGCACTATACAAGAGGAAGGCAATGTTCTGG
TACTGCCAGAAAAACGCACGGTCCCACTTACACTGTGGGGAGGCATATTC
CCTGTTGGCGTTGAGGTTTCAACTCCAGTGGTATCCAATTCAGAGTGCGT
GCAGGATCCAAAGAGAGTCCGGTTCAGCGCAGTTCATCCGCCCAACGCCC
CGGTTCCACAGGACGTTCCACAGGACGTTCCACAGGACGTTCCACAGGAC
GTTCCACAGGACGTTCCACAGGACGTTCCACAGGACGTTCCACAGGACGT
TCCACAGGACGTTCCACAGGACGTTCCGCCGCTGACGCGTGTAGAAGCCG
AGATTCGGCGACTGTTGACGTGGCCTCTCAGTACGACCGCGGCTTGTCAT
AATTGCGCCCACACCTTTGACGGGGTGCCTGTACCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20766:721..1206+

>mRNA_P-wetherbeei_contig20766.1.1 ID=mRNA_P-wetherbeei_contig20766.1.1|Name=mRNA_P-wetherbeei_contig20766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig20766:721..1206+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATACGAAAGGGCATCAAAACTCGTCCAAGGACAGAACTCGATGACAT
TCATTCACTTCTTCAACAAAGCACTATACAAGAGGAAGGCAATGTTCTGG
TACTGCCAGAAAAACGCACGGTCCCACTTACACTGTGGGGAGGCATATTC
CCTGTTGGCGTTGAGGTTTCAACTCCAGTGATTCGGCGACTGTTGACGTG
GCCTCTCAGTACGACCGCGGCTTGTCATAATTGCGCCCACACCTTTGACG
GGGTGCCTGTACCT
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