mRNA_P-wetherbeei_contig2075.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2075.1.1
Unique NamemRNA_P-wetherbeei_contig2075.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A6H5JI15_9PHAE (ZZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI15_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.620e-16
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:  394 LHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAA--GE-HPYPFIKIARRAQAPLAILCVLKEDEPATAEDIA 612
            +H  V+CD C V PI+G RYKCAVR D+DLCE+CE A  G+  P+PF+KI    QAP AI+C+LK D+P TA++ A
Sbjct:  430 VHHGVKCDACDVCPIIGTRYKCAVRADFDLCEECERAPVGQGSPFPFLKIRTPTQAPAAIVCLLKHDQPGTAQEAA 505
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A7S2AS31_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AS31_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.080e-14
Identity = 59/198 (29.80%), Postives = 80/198 (40.40%), Query Frame = 1 
Query:   25 SIKMTYQGETRRFVL-----PSASPTVVELHAEVRRLYGGIGDAPLRVSYTDDEGDVVTIRGDDELRLV------LGSGSVRFDVTAEGSSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKED 585
            +IK+++ GE RR  L     P   P        +  L+        ++SY DDE DVVTI    EL         +G  ++RFD+T                                                +H  V CDGC  SPI+G RYKC+ R DYDLC +CE+     YP++KI     AP  I+ + KED
Sbjct:   15 TIKLSFNGEVRRIPLQNPISPEGFPFEDLETRIIPTLFTSTKKGKFKISYIDDEDDVVTISSQPELDEAVDQARGMGRRAIRFDITQVNGEKISLHDASE---------------------------------TIHHGVCCDGCDASPIIGVRYKCSYRKDYDLCSKCESTDTSQYPYLKIKTPEHAPGVIIAIPKED 179
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A7S2BGJ0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGJ0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.940e-14
Identity = 52/196 (26.53%), Postives = 87/196 (44.39%), Query Frame = 1 
Query:   25 SIKMTYQGETRR----FVLPSASPTVVELHAEVRRLYGGIGDAPLRVSYTDDEGDVVTIRGDDEL------RLVLGSGSVRFDVTAEGSSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKE 582
            ++K++++GE  R    F +      +  L   +  ++  +  +  +++Y DDE D+VT+    EL       + +G   +RFDV     +                                            H++V CDGC ++PI+G R+KC+ R +YDLCE+CEA    PYPF+KI    QAP  ++ V +E
Sbjct:   27 TLKVSFEGEVHRTPFSFPVRPGEYALENLEMVILNIFNVLKKSNFQITYRDDENDIVTVATQPELDEALSVAIDMGHKILRFDVIRVKRNNMRNQSHKEDHVDGGESHSSSSVA--------------------HLNVACDGCNMTPIIGARFKCSFRQNYDLCERCEAVDSSPYPFLKIKTPEQAPKLLVAVPRE 202
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A7S4D636_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D636_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.390e-13
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  394 LHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAA-GEHPYPFIKIARRAQAPLAILCVLKEDEPATAEDIATQA 621
            +H  V CD CG +PIVG RYKCAVRDD+DLC  CEA   +  YP++KI R +QAP A++ VLK +E     D   QA
Sbjct:  201 VHPHVTCDACGRNPIVGVRYKCAVRDDFDLCAPCEAKDADCKYPYLKIRRPSQAPAALITVLKSEEDEAMADDDAQA 277
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A077ZWA5_STYLE (Zinc zz type family n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZWA5_STYLE)

HSP 1 Score: 82.4 bits (202), Expect = 3.810e-13
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  397 HVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKEDEPATAE 603
            H +V CDGCGV+PI+G RYKC V +++D CE CE    H +PFIKI R   AP  I+  + +D PAT E
Sbjct:  273 HPNVACDGCGVAPIIGIRYKCCVCNNFDYCEVCEERLNHEHPFIKILRPENAPKTIITAINDDNPATEE 341
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A8J2SK65_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SK65_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-12
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:  394 LHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKEDEPATAEDIATQAT 624
            +HV+V CDGC +SPIVGPRYKC VRDDYDLC +C +    P+P +++      P A L V +   PA   + A +A+
Sbjct:  108 VHVNVTCDGCNMSPIVGPRYKCLVRDDYDLCVRCNSLEAEPFPKVRV------PAAKLRVCRRRRPAPCAEAAAEAS 178
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A7S3HT26_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT26_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.840e-12
Identity = 47/176 (26.70%), Postives = 80/176 (45.45%), Query Frame = 1 
Query:   25 SIKMTYQGETRRFVL--PSASPTVVELHAEVRRLYGGIGDAPLRVSYTDDEGDVVTIRGD----DELRLVLGSGSVRFDVTAEGSSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKI 534
            ++K+ +Q E RR  +   +   T+  L + +  ++  +     R+ + D++GD VTI  +    D ++ +  +G  +F + A   +                                          ++H  VQCD CG+ PIVGPR+KC+VR+D+DLC  CEA G  P+P IK+
Sbjct:    4 TVKLFFQDEIRRVSIGDENGDLTISHLKSTIDAIFPALKHGDFRLLWKDEDGDFVTISSNVEFLDAVKEMTANGLAKFHIKAAQETVEQLPSSGPTDHCAAGSSELE---------------------SVHDGVQCDECGILPIVGPRFKCSVRNDFDLCAACEAKGPQPHPMIKM 158
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A0V0QS12_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QS12_PSEPJ)

HSP 1 Score: 78.2 bits (191), Expect = 8.690e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:  394 LHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKEDE 588
            +H  + CDGC  + I G RYKCAV +D+D CE+CEA+ EH +PF+KI +   AP  I C LK+DE
Sbjct:  314 VHKYIICDGCEKTYITGIRYKCAVCEDFDFCEKCEASKEHNHPFLKIRKPELAPKMIFCALKDDE 378
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A7S3MN95_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3MN95_9SPIT)

HSP 1 Score: 74.7 bits (182), Expect = 1.820e-11
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:  394 LHVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKEDE--PATAED 606
            +H  V CDGCGV+PIVG RYKC+VR +YDLC +CE   ++ + F+KI+    AP  ++ +L E+E  PAT ++
Sbjct:  180 VHEGVSCDGCGVNPIVGIRYKCSVRKNYDLCAKCEDRLDNEHAFLKISVPGGAPDVMITMLNEEEVHPATQQE 252
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BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Match: A0A6V1SVR0_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SVR0_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 2.140e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  397 HVSVQCDGCGVSPIVGPRYKCAVRDDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKEDE 588
            H  + CD C   P+VG RYKCAVR D+DLC +CEA  +  YP++KI   +QAP A++ +LK DE
Sbjct:  143 HPGIICDHCD-QPVVGVRYKCAVRQDFDLCSKCEAKDQSDYPYLKICHPSQAPAALMTILKPDE 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI15_9PHAE2.620e-1656.58ZZ-type domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2AS31_9STRA2.080e-1429.80Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2BGJ0_9STRA5.940e-1426.53Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4D636_HETAK1.390e-1353.25Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A077ZWA5_STYLE3.810e-1352.17Zinc zz type family n=1 Tax=Stylonychia lemnae Tax... [more]
A0A8J2SK65_9STRA1.840e-1246.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3HT26_9STRA6.840e-1226.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0V0QS12_PSEPJ8.690e-1252.31Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
A0A7S3MN95_9SPIT1.820e-1147.95Hypothetical protein (Fragment) n=2 Tax=Choreotric... [more]
A0A6V1SVR0_HETAK2.140e-1151.56Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2075contigP-wetherbeei_contig2075:2..1538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5888.CAK57387
PFAMsPB1,RCC1,ZZ
Model size1314
Max annot lvl2759|Eukaryota
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.36e-11
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota,3ZCFW@5878|Ciliophora
EC2.3.2.26
DescriptionPB1 domain
Cds size1161
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.6269794-UTR-P-wetherbeei_contig2075:1..191683186207.6269794-UTR-P-wetherbeei_contig2075:1..19Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2075 2..19 +
1683186207.6573968-UTR-P-wetherbeei_contig2075:1403..15381683186207.6573968-UTR-P-wetherbeei_contig2075:1403..1538Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2075 1404..1538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.6377544-CDS-P-wetherbeei_contig2075:19..471683186207.6377544-CDS-P-wetherbeei_contig2075:19..47Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2075 20..47 +
1683186207.6484241-CDS-P-wetherbeei_contig2075:270..14031683186207.6484241-CDS-P-wetherbeei_contig2075:270..1403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2075 271..1403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2075.1.1prot_P-wetherbeei_contig2075.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2075 20..1403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2075.1.1

>prot_P-wetherbeei_contig2075.1.1 ID=prot_P-wetherbeei_contig2075.1.1|Name=mRNA_P-wetherbeei_contig2075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=387bp
MTSIKMTYQGETRRFVLPSASPTVVELHAEVRRLYGGIGDAPLRVSYTDD
EGDVVTIRGDDELRLVLGSGSVRFDVTAEGSSTTTTAPLPPAGAMSMDQP
QRPSDSTKEEQQQATPAPEPEPGPNLHVSVQCDGCGVSPIVGPRYKCAVR
DDYDLCEQCEAAGEHPYPFIKIARRAQAPLAILCVLKEDEPATAEDIATQ
ATHDWSRVASFAYRHCMGRAGTFGGFGPGFGTGRSFGGPGFGSFGGPGFG
GCHGFGGGCRYGRGGGRGCGSRVGGCCPGHVAASGGCGGPQRGAGETKES
SVAASEAEAAAIFQSHVEKWREQLVELEQMGFTDVARNIELLERYGRTFG
VGHGGGNGGDNGGDSSRGLALVIQDLMNGMAGLYVA*
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mRNA from alignment at P-wetherbeei_contig2075:2..1538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2075.1.1 ID=mRNA_P-wetherbeei_contig2075.1.1|Name=mRNA_P-wetherbeei_contig2075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1537bp|location=Sequence derived from alignment at P-wetherbeei_contig2075:2..1538+ (Phaeothamnion wetherbeei SAG_119_79)
AAACAAACCGCGACAAAAATGACGAGCATCAAGATGACCTACCAAGGTAC
GCCCGCCGTCTGCTGGTAGGCAAAGCAACGTTTTCTGCTTTTCTTTGGCG
GCTTTTACCTCTGAATCACGTTGCCGCTCTCTGCCTTTCCTTCCTTCCCT
TCTTTCGCAATGCTCGGCATGCGATTCAATGTATCACGACGCATATACGC
ATCGCTACTCTTTGCTTATCTTACCACGCTTCATTCACCGTGTCTCTCGT
CTTCCTCTACTCGGCGCAGGCGAGACCCGCCGTTTTGTTCTTCCCTCCGC
TTCGCCCACCGTCGTGGAGCTCCATGCCGAAGTGCGCCGCCTTTATGGCG
GCATCGGCGATGCCCCGCTACGCGTCTCGTACACCGATGACGAGGGTGAC
GTGGTTACGATCCGCGGCGACGATGAGCTCCGTCTCGTGCTGGGCAGCGG
CTCCGTTCGCTTTGACGTCACCGCGGAGGGCAGCAGCACCACCACTACCG
CTCCCCTGCCTCCCGCCGGCGCCATGAGCATGGACCAGCCGCAGCGCCCT
TCCGATAGCACCAAAGAGGAGCAGCAGCAGGCCACCCCGGCGCCTGAGCC
GGAGCCTGGACCCAACCTCCACGTCAGCGTCCAGTGCGACGGCTGCGGCG
TCTCTCCCATTGTGGGGCCGCGCTACAAGTGCGCCGTCCGCGACGACTAC
GATCTTTGCGAGCAGTGCGAGGCAGCCGGCGAGCACCCCTACCCGTTCAT
CAAAATCGCCAGGCGCGCCCAAGCGCCCCTCGCCATTCTGTGCGTCCTCA
AGGAAGATGAGCCGGCCACTGCCGAGGACATCGCCACCCAGGCAACGCAT
GACTGGTCCCGCGTCGCCTCGTTCGCCTACCGCCACTGCATGGGCCGCGC
TGGCACCTTTGGAGGCTTCGGTCCGGGCTTTGGCACCGGCCGCAGCTTTG
GCGGTCCCGGCTTCGGCAGCTTTGGCGGCCCCGGTTTTGGTGGCTGCCAC
GGCTTTGGCGGCGGCTGCCGCTACGGTCGTGGCGGCGGCCGTGGCTGCGG
CAGCCGCGTAGGCGGCTGCTGCCCCGGCCACGTGGCGGCTTCTGGCGGCT
GCGGCGGCCCTCAGCGCGGCGCGGGCGAGACCAAGGAGAGTTCCGTTGCG
GCCAGCGAGGCTGAGGCAGCCGCCATTTTCCAGAGCCACGTCGAGAAGTG
GCGCGAGCAGCTGGTGGAGCTGGAGCAAATGGGATTCACTGACGTCGCCC
GCAACATTGAGCTTCTCGAGCGCTACGGCCGCACCTTCGGCGTCGGCCAC
GGCGGTGGCAATGGCGGAGACAACGGCGGGGACAGCAGCCGCGGCCTGGC
GCTGGTCATCCAGGACCTCATGAACGGCATGGCCGGCCTCTATGTGGCGT
GAATGCTCTCATCGCAGGCAGGTCCCTTGCCGAGGCGGCTCTGATGCTTG
GGTTTAAGCAGCGCTCAAGGGGCACGCCGGTCAAAGGGTCTGGGCGGTGG
TTCGGACTTGCAGTACCTAGTCTTCTTCCCAACTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2075:2..1538+

>mRNA_P-wetherbeei_contig2075.1.1 ID=mRNA_P-wetherbeei_contig2075.1.1|Name=mRNA_P-wetherbeei_contig2075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig2075:2..1538+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAGCATCAAGATGACCTACCAAGGCGAGACCCGCCGTTTTGTTCT
TCCCTCCGCTTCGCCCACCGTCGTGGAGCTCCATGCCGAAGTGCGCCGCC
TTTATGGCGGCATCGGCGATGCCCCGCTACGCGTCTCGTACACCGATGAC
GAGGGTGACGTGGTTACGATCCGCGGCGACGATGAGCTCCGTCTCGTGCT
GGGCAGCGGCTCCGTTCGCTTTGACGTCACCGCGGAGGGCAGCAGCACCA
CCACTACCGCTCCCCTGCCTCCCGCCGGCGCCATGAGCATGGACCAGCCG
CAGCGCCCTTCCGATAGCACCAAAGAGGAGCAGCAGCAGGCCACCCCGGC
GCCTGAGCCGGAGCCTGGACCCAACCTCCACGTCAGCGTCCAGTGCGACG
GCTGCGGCGTCTCTCCCATTGTGGGGCCGCGCTACAAGTGCGCCGTCCGC
GACGACTACGATCTTTGCGAGCAGTGCGAGGCAGCCGGCGAGCACCCCTA
CCCGTTCATCAAAATCGCCAGGCGCGCCCAAGCGCCCCTCGCCATTCTGT
GCGTCCTCAAGGAAGATGAGCCGGCCACTGCCGAGGACATCGCCACCCAG
GCAACGCATGACTGGTCCCGCGTCGCCTCGTTCGCCTACCGCCACTGCAT
GGGCCGCGCTGGCACCTTTGGAGGCTTCGGTCCGGGCTTTGGCACCGGCC
GCAGCTTTGGCGGTCCCGGCTTCGGCAGCTTTGGCGGCCCCGGTTTTGGT
GGCTGCCACGGCTTTGGCGGCGGCTGCCGCTACGGTCGTGGCGGCGGCCG
TGGCTGCGGCAGCCGCGTAGGCGGCTGCTGCCCCGGCCACGTGGCGGCTT
CTGGCGGCTGCGGCGGCCCTCAGCGCGGCGCGGGCGAGACCAAGGAGAGT
TCCGTTGCGGCCAGCGAGGCTGAGGCAGCCGCCATTTTCCAGAGCCACGT
CGAGAAGTGGCGCGAGCAGCTGGTGGAGCTGGAGCAAATGGGATTCACTG
ACGTCGCCCGCAACATTGAGCTTCTCGAGCGCTACGGCCGCACCTTCGGC
GTCGGCCACGGCGGTGGCAATGGCGGAGACAACGGCGGGGACAGCAGCCG
CGGCCTGGCGCTGGTCATCCAGGACCTCATGAACGGCATGGCCGGCCTCT
ATGTGGCGTGA
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