mRNA_P-wetherbeei_contig20733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: A0A7V0MEL9_9DELT (Efflux RND transporter permease subunit n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0MEL9_9DELT) HSP 1 Score: 221 bits (564), Expect = 9.300e-69 Identity = 116/187 (62.03%), Postives = 146/187 (78.07%), Query Frame = 1
Query: 22 LVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYYRY 582
L T N+RL TID Y+LLWDGE+R+TLD FRDMTGAL VAISF+YLLLV YYRSF IPL+AMAA+P GVFP HWL G F+ ASMIG++ALAG+VVR+SLL++DF+ D G+PL EA EAG VRLRP++LTTLAI+LG+A++ TDP+F G+A++L+ GT ST+LT+ V P L Y +
Sbjct: 132 LSTANLRLQSVPPDTIDGYQLLWDGEIRMTLDVFRDMTGALAVAISFIYLLLVGYYRSFIIPLVAMAAVPLGIAGVFPGHWLLGQHFTAASMIGVIALAGVVVRNSLLIMDFVIDYVKRGLPLYEAVREAGAVRLRPILLTTLAIVLGTAIMLTDPVFGGLAIALIFGTIASTVLTVIVVPVLIYLF 318
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: R4YU67_OLEAN (Acriflavin resistance protein n=1 Tax=Oleispira antarctica RB-8 TaxID=698738 RepID=R4YU67_OLEAN) HSP 1 Score: 218 bits (555), Expect = 1.050e-67 Identity = 115/194 (59.28%), Postives = 147/194 (75.77%), Query Frame = 1
Query: 1 EVADGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYYRY 582
++ G +L T N+RL A TID Y+LLWDGE+RLTLD FRDM AL +A+ F+YLLLV YYRSF IPL+AM+AIP GVFP HW+ FS SMIG++AL+G+VVR+SLL+IDF+ D GMPLREA EAG VR+RP++LT LAI+LGSAV+ TDPMF+G+A+SL+ GT ST+LT+ V P + + Y
Sbjct: 110 DIGHGEKLTTANLRLNSAVPDTIDGYQLLWDGEIRLTLDTFRDMFVALGIALVFIYLLLVGYYRSFIIPLVAMSAIPLGLAGVFPGHWIMDQPFSAPSMIGVIALSGVVVRNSLLIIDFVLDYMEQGMPLREAVSEAGAVRMRPIILTALAIVLGSAVMLTDPMFSGLAISLIFGTLASTVLTLLVVPLMLFSY 303
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: A0A2N2U0X0_9PROT (AcrB/AcrD/AcrF family protein (Fragment) n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-17 TaxID=2013708 RepID=A0A2N2U0X0_9PROT) HSP 1 Score: 210 bits (534), Expect = 6.090e-66 Identity = 113/181 (62.43%), Postives = 141/181 (77.90%), Query Frame = 1
Query: 34 NMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYY 576
N+RL PA TID YRLLWDGE+R+TLD +RDM GAL +A+ +YL+LVAYY+SF IPLIAMAAIP GVFP HWL G F+ SMIG++ALAG+VVR+SLL+IDF+ D GM LREA LEAG VRLRP++LT LAIILGS V+ +D +F G+A+SL+ GT +T+LT+ V P L+Y
Sbjct: 2 NLRLNPAIPDTIDGYRLLWDGEIRMTLDTYRDMLGALGIAVILIYLVLVAYYQSFAIPLIAMAAIPLGLAGVFPGHWLMGQPFTATSMIGVIALAGVVVRNSLLIIDFVLDYRRQGMDLREAILEAGAVRLRPILLTALAIILGSMVMLSDAVFGGLAISLIFGTLAATVLTLIVVPILFY 182
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: UPI001CF8AB50 (efflux RND transporter permease subunit n=1 Tax=Ferribacterium limneticum TaxID=76259 RepID=UPI001CF8AB50) HSP 1 Score: 227 bits (578), Expect = 1.720e-65 Identity = 118/192 (61.46%), Postives = 150/192 (78.12%), Query Frame = 1
Query: 4 VADGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYYR 579
++DG RL TGN+R P TID YRLLWDGE+R TLD FRDM GAL +A++FV+L+LVAYY+SF +PL+AMAAIP GVFP HWL G F+ SM+GL+ALAG+VVR+SLL+IDF+ D + GMPLREA LEAG VRLRP++LT LAI+LGSAV+ +DP+F G+A+SL+ GT ST+L + P L Y+
Sbjct: 885 LSDGSRLATGNLRFNPVLADTIDNYRLLWDGELRQTLDTFRDMLGALLLALTFVFLVLVAYYQSFSLPLVAMAAIPLGLAGVFPGHWLMGQPFTATSMVGLIALAGVVVRNSLLIIDFVLDYQRQGMPLREAILEAGAVRLRPILLTALAIVLGSAVMLSDPVFGGLAISLIFGTLASTVLAMVAVPLLLYQ 1076
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: UPI00190F2BF7 (efflux RND transporter permease subunit n=1 Tax=Sphingobium fuliginis (strain ATCC 27551) TaxID=336203 RepID=UPI00190F2BF7) HSP 1 Score: 213 bits (542), Expect = 5.610e-65 Identity = 111/190 (58.42%), Postives = 145/190 (76.32%), Query Frame = 1
Query: 10 DGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYYR 579
DG L TGN+ L ID Y+LLW GEMR+TLD +RDM AL A++ +Y LLVAYYRSF PLIAM+A+P +G+FP HWL T FS S++G++AL+G+V+R+SLL+IDFI+DN+ GMPL EAA AG VRLRP++LTTLAI+LGSA++ DP+F G+A+SL+ GT +ST+LT+FV P LY R
Sbjct: 177 DGQPLATGNLSLSEKAPDIIDGYQLLWSGEMRMTLDIYRDMLMALGAALTAIYFLLVAYYRSFLTPLIAMSAVPLGVIGIFPGHWLLKTDFSATSIVGIIALSGVVIRNSLLIIDFIQDNQKHGMPLAEAARMAGAVRLRPILLTTLAIVLGSAIMIPDPVFGGLAISLIFGTLVSTVLTVFVVPILYER 366
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: A0A6C2D7F0_9RHOO (Efflux RND transporter permease subunit n=6 Tax=Betaproteobacteria TaxID=28216 RepID=A0A6C2D7F0_9RHOO) HSP 1 Score: 224 bits (571), Expect = 1.560e-64 Identity = 118/191 (61.78%), Postives = 150/191 (78.53%), Query Frame = 1
Query: 4 VADGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYY 576
+ADG RLVTGN+R P T+D RLLWDGE+R+TLD +RDM GAL +AI+F++L+LVAYY+SF +PL+AMAAIP GVFP HWL G F+ SMIG++ALAG+VVR+SLL+IDF+ D GM LREA LEAG VRLRP++LT LAI+LGSAV+ DP+F G+A+SL+ GT +ST+LT+ V P L Y
Sbjct: 885 LADGSRLVTGNLRFKPVAPDTLDGPRLLWDGELRMTLDTYRDMLGALGLAITFIFLVLVAYYQSFSLPLVAMAAIPLGLAGVFPGHWLMGQPFNATSMIGIIALAGVVVRNSLLIIDFVLDYRRQGMDLREAILEAGAVRLRPILLTALAIVLGSAVMLADPVFGGLAISLIFGTLVSTVLTLIVVPLLLY 1075
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: A0A7R7JC23_9GAMM (Multidrug transporter AcrB n=1 Tax=Thiohalobacter sp. COW1 TaxID=2795687 RepID=A0A7R7JC23_9GAMM) HSP 1 Score: 223 bits (567), Expect = 5.320e-64 Identity = 118/189 (62.43%), Postives = 148/189 (78.31%), Query Frame = 1
Query: 10 DGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYY 576
DG RL TGN+RL P T+D RLLWDGE+R+TLD +RDM GAL +AI+F++L+LVAYY+SF +PL+AMAAIP GVFP HWL G F+ SMIG++ALAG+VVR+SLL+IDF+ D + GM LREA LEAG VR RP++LT LAI+LGSAVI +DP+F G+AVSL+ GT ST+LT+ V P L Y
Sbjct: 887 DGSRLTTGNLRLNPVTADTLDGPRLLWDGELRMTLDTYRDMLGALGLAITFIFLVLVAYYQSFTLPLVAMAAIPLGLAGVFPGHWLMGQPFNATSMIGIIALAGVVVRNSLLIIDFVLDYQRQGMGLREAILEAGAVRFRPILLTALAIVLGSAVILSDPVFGGLAVSLIFGTIASTVLTLIVIPLLLY 1075
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: UPI0003AB053D (efflux RND transporter permease subunit n=2 Tax=Betaproteobacteria TaxID=28216 RepID=UPI0003AB053D) HSP 1 Score: 221 bits (564), Expect = 1.000e-63 Identity = 118/191 (61.78%), Postives = 150/191 (78.53%), Query Frame = 1
Query: 4 VADGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYY 576
+A+G RL T N+RL PA TID YRLLWDGE+R+TLD +RDM GAL +A++F+YL+LVAYY+SF IPL+AMAAIP GVFP HWL G F+ SMIG++ALAG+VVR+SLL+IDF+ D GM LREA LEAG VRLRP++LT LAIILGS V+ +D +F G+A+SL+ GT +T+LT+ V P L+Y
Sbjct: 802 LANGERLGTANLRLNPAIPDTIDGYRLLWDGEIRMTLDTYRDMLGALGIALTFIYLVLVAYYQSFAIPLVAMAAIPLGLAGVFPGHWLMGQPFTATSMIGVIALAGVVVRNSLLIIDFVLDYRRQGMDLREAILEAGAVRLRPILLTALAIILGSMVMLSDAVFGGLAISLIFGTLAATVLTLIVVPILFY 992
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: S2FEF6_9PSED (Acriflavin resistance protein n=1 Tax=Pseudomonas sp. G5(2012) TaxID=1268068 RepID=S2FEF6_9PSED) HSP 1 Score: 218 bits (556), Expect = 1.770e-62 Identity = 115/192 (59.90%), Postives = 149/192 (77.60%), Query Frame = 1
Query: 4 VADGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYYR 579
+A+ RL TGN+RL PA TID Y LLWDGE+R+TLD +RDM GAL +A++ +YL+LVAYY+SF IPL+AMAAIP VG+FP HWL G F+ S+IG++ALAG+VVR+SLL+IDF+ D GM LR+A LEAG VRLRP++LT LAII GS ++ +DP+F G+A+SL+ GT +TILT+ V P L YR
Sbjct: 885 LANDERLGTGNLRLTPAVPDTIDGYHLLWDGEIRMTLDTYRDMLGALGLALTLIYLMLVAYYQSFAIPLVAMAAIPLGLVGIFPGHWLMGQSFTATSLIGVIALAGVVVRNSLLIIDFVLDYRHQGMSLRKAILEAGAVRLRPILLTALAIIFGSMIMLSDPVFGGLAISLIFGTLSATILTLIVVPILLYR 1076
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Match: Q11Z83_POLSJ (Acriflavin resistance protein n=9 Tax=Burkholderiales TaxID=80840 RepID=Q11Z83_POLSJ) HSP 1 Score: 218 bits (556), Expect = 1.790e-62 Identity = 115/191 (60.21%), Postives = 149/191 (78.01%), Query Frame = 1
Query: 4 VADGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVAISFVYLLLVAYYRSFFIPLIAMAAIPAAFVGVFPAHWLTGTWFSMASMIGLVALAGIVVRSSLLVIDFIRDNEALGMPLREAALEAGVVRLRPVMLTTLAIILGSAVIYTDPMFTGMAVSLMAGTAMSTILTIFVAPTLYY 576
+ADG RL TGN+RL P T++ RLLWDGE+R+TLD +RDM GAL +A++F++L+LVAYY+SF +PL+AMAAIP G+FP HWL G F+ SMIG++ALAG+VVR+SLL+IDF+ D GM LREA LEAG VRLRP++LT LAI+LGSAV+ +DP+F G+A+SL+ GT ST LT+ V P L Y
Sbjct: 885 LADGSRLTTGNLRLNPVAPDTLEGPRLLWDGELRMTLDTYRDMLGALGLALTFIFLVLVAYYQSFSLPLVAMAAIPLGLAGIFPGHWLMGQPFTATSMIGIIALAGVVVRNSLLIIDFVLDYRRQGMDLREAILEAGAVRLRPILLTALAIMLGSAVMLSDPVFGGLAISLIFGTLASTALTLVVVPLLLY 1075 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20733.1.1 >prot_P-wetherbeei_contig20733.1.1 ID=prot_P-wetherbeei_contig20733.1.1|Name=mRNA_P-wetherbeei_contig20733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp EVADGHRLVTGNMRLIPAEVSTIDTYRLLWDGEMRLTLDAFRDMTGALTVback to top mRNA from alignment at P-wetherbeei_contig20733:2..583+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20733.1.1 ID=mRNA_P-wetherbeei_contig20733.1.1|Name=mRNA_P-wetherbeei_contig20733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig20733:2..583+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20733:2..583+ >mRNA_P-wetherbeei_contig20733.1.1 ID=mRNA_P-wetherbeei_contig20733.1.1|Name=mRNA_P-wetherbeei_contig20733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig20733:2..583+ (Phaeothamnion wetherbeei SAG_119_79)back to top |