mRNA_P-wetherbeei_contig2073.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2073.1.1
Unique NamemRNA_P-wetherbeei_contig2073.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: D7FV53_ECTSI (RPN2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV53_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 4.940e-76
Identity = 141/233 (60.52%), Postives = 160/233 (68.67%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLICG 966
            +V+  VPLIE LSE+DAFPARELAAAVASK FFHLEEY+DALRLALGAG YFDVS+K+EYVST+VSKCID+Y   R A                                         +DPRME IVERMFDRCY DGEY QAMGIALE+ RLDKVEETI++  D+P LL YT DVCQTLV SR  RL+VL +LV +HR  P PDHVAVC+CLQ L EA  VAE+LK L+ G
Sbjct:   59 EVAAVVPLIEALSEDDAFPARELAAAVASKCFFHLEEYSDALRLALGAGEYFDVSSKTEYVSTMVSKCIDQYTAQRTAAIGGGVPDEAPEE----------------------------MDPRMEGIVERMFDRCYADGEYTQAMGIALEAHRLDKVEETIQQASDKPTLLKYTFDVCQTLVTSRQTRLKVLAILVAMHRLLPEPDHVAVCKCLQFLGEAAQVAEVLKDLLRG 263
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: A0A6A5A5N9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A5N9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.950e-60
Identity = 113/231 (48.92%), Postives = 145/231 (62.77%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLI 960
            +++ +VP IE LSE  AF  RELAA+VASK FFHLEEY DALRLALGAG YFDV+  S+Y  T+++ CID Y+ +R                                          AVDPRM+AIVE+MFDRCY  G + QA+G+ALESRRLDKVEE+IR+ PD  A LAY  +V +T V +R  RL+VL+VLV+L+R  P  ++  +CQ LQLLD+   VA IL+ L+
Sbjct:   48 EIADAVPFIESLSEETAFSHRELAASVASKCFFHLEEYQDALRLALGAGKYFDVNVHSQYTETIIATCIDEYIAIRT------------------------------------NGEGKAVDPRMQAIVEQMFDRCYASGTFKQALGVALESRRLDKVEESIRKSPDVSASLAYCFEVSRTTVTNRDFRLQVLQVLVQLYRGLPVQEYTHICQILQLLDQHAEVATILQTLL 242
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: A0A6G0XH66_9STRA (RPN2_C domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XH66_9STRA)

HSP 1 Score: 216 bits (550), Expect = 9.320e-60
Identity = 115/231 (49.78%), Postives = 147/231 (63.64%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLI 960
            +++ +VPLIE LSE +AFP RELAA+VASK FFHLEEY DALRLALGAG YFDV+  S+Y  T+++ CID Y  +R                                           VDPRM+AIVE+MFDRCY  G + QA+G+ALESRRLDKVEE+IRR PD  A LAY  D+C+T V +R  RL+VL+VLV+++R  P  ++  +CQCLQ+LD    VA IL+ L+
Sbjct:   47 EIADAVPLIESLSEEEAFPHRELAASVASKCFFHLEEYQDALRLALGAGKYFDVNVHSQYTETIIATCIDEYTAIRT------------------------------------NGEGKTVDPRMQAIVEQMFDRCYASGTFKQALGVALESRRLDKVEESIRRSPDVSATLAYCFDICRTTVTNRDFRLQVLQVLVQIYRSLPVQEYSNICQCLQILDLHADVATILQTLV 241
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: A0A397A0X8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A0X8_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.050e-59
Identity = 126/304 (41.45%), Postives = 172/304 (56.58%), Query Frame = 1 
Query:   73 ILGRGERDRKTALTRTSYPLISPFSLFIHSSIHSDTCFNKFNISSR*PRMLLELVAPKKRTQKL--------LQVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLI 960
            I  + +   + A+ + S+  +S   ++    +H+DT  +   +S      +     P    QKL         +++ +VPLIE LSE  AF  RELAA+VASK FFHLEEY DALRLALGAG YFDV+  S+Y  T+++ CID Y+ +R                                          AVDPRM+AIVE+MFDRCY  G + QA+G+ALESRRLDKVEE+IR+ PD  A LAY  +V +T V +R  RL+VL+VLV+L+R  P  ++  +CQ LQLLD+   VA IL+ L+
Sbjct:  240 IYAKADESTRRAMNK-SFVRLSLCGVYRTEGVHTDTVSDHVTLSVS----MFNRPLPAHALQKLHEVVDYFWAEIADAVPLIESLSEEAAFSHRELAASVASKCFFHLEEYQDALRLALGAGKYFDVNVHSQYTETIIATCIDEYIAIRT------------------------------------NGEGKAVDPRMQAIVEQMFDRCYASGTFKQALGVALESRRLDKVEESIRKSPDVSASLAYCFEVSRTTVTNRDFRLQVLQVLVQLYRGLPVQEYTHICQILQLLDQHAEVATILQTLL 502
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: A0A835YXG5_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXG5_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.120e-58
Identity = 121/231 (52.38%), Postives = 153/231 (66.23%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLI 960
            +V+++VPLIEE+SE+  FPARELAA+VASKVFFHLEEYNDALRLALGAGP+FDV+AK+EYVSTLVS+CID YV LR A                                         +D RMEAIVERMF+RC+ DG + QAMGIALE+RRLD VE+T+RRC D+  LL+Y+ D+   L+Q R  +L++L  ++         DH AV +CLQ+L EA L AE+LK L+
Sbjct:   54 EVASAVPLIEEMSEDPGFPARELAASVASKVFFHLEEYNDALRLALGAGPHFDVTAKTEYVSTLVSRCIDEYVALRCADAP------------------------------------ATIDARMEAIVERMFERCFTDGAWTQAMGIALEARRLDMVEQTVRRCDDKAVLLSYSFDL--PLLQRRT-QLQLLVCILFFGCFWQDVDHTAVVRCLQVLGEAALAAEVLKQLL 245
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: W7TZI5_9STRA (Armadillo-like helical n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZI5_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.020e-58
Identity = 115/233 (49.36%), Postives = 152/233 (65.24%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLICG 966
            +V+T++PLIEELSE+DA+ AR+LAA VASKVFFHLEEY+DALRL LGAG YFDVS K+EYV TLV+K  D YV LR                                        +  +DPR+E IVE+MF+RC++DG + QA+GIALE+ RLDK+EE I R P +  L+A+   + QTL+ SR  RL+VL VLV++H     P++V++CQC+Q L++A  VAEIL  L+ G
Sbjct:   54 EVATALPLIEELSEDDAYEARDLAAFVASKVFFHLEEYDDALRLGLGAGSYFDVSKKTEYVETLVAKAFDEYVRLRERLVLVDNS-------------------------------SATIDPRLETIVEKMFERCFLDGAFNQAVGIALEAHRLDKIEEAINRAPAKGLLIAHIFKISQTLILSRHFRLQVLDVLVRVHSAVIDPEYVSICQCMQFLNKASDVAEILDKLLQG 255
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: A0A4D9D1A3_9STRA (FCP1 homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1A3_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.400e-58
Identity = 116/233 (49.79%), Postives = 151/233 (64.81%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLICG 966
            +V+T++PLIEELSE+D F AR+LAA VASKVFFHLEEY+DALRL LGAG YFDVS K+EYV TLV+K  D YV LR                                        +  +DPR+E+IVE+MF+RC++DG + QA+GIALE+ RLDK+EE I R P +  L+A+   V QTL+ SR  RL+VL VLV++H     P++V++CQC+Q L+ A  VAEIL  L+ G
Sbjct:   54 EVATALPLIEELSEDDEFEARDLAAFVASKVFFHLEEYDDALRLGLGAGSYFDVSKKTEYVETLVAKAFDEYVRLRERLVLVDNS-------------------------------SATIDPRLESIVEKMFERCFLDGAFNQAVGIALEAHRLDKIEEAINRAPAKGLLIAHIFKVSQTLILSRHFRLQVLDVLVRVHSTVVDPEYVSICQCMQFLNRASDVAEILDKLLQG 255
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: A0A024UWU0_9STRA (RPN2_C domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWU0_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.410e-58
Identity = 116/231 (50.22%), Postives = 145/231 (62.77%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLI 960
            +++ +VPLIE LSE  AF  RELAA+VASK FFHLEEY DALRLALGAG YFDV+  S+Y  T+++ CID Y+ +R                                           VDPRM+AIVE+MFDRCY  G + QA+G+ALESRRLDKVEE+IRR PD  A LAY  +V +T V +R  RL+VL+VLVKL++  P  +H  +CQ LQLLD+   VA IL+ LI
Sbjct:   47 EIADAVPLIESLSEEAAFSHRELAASVASKCFFHLEEYQDALRLALGAGKYFDVNVHSQYTETIIATCIDEYIAIRTNGEDK------------------------------------TVDPRMQAIVEQMFDRCYASGTFKQALGVALESRRLDKVEESIRRSPDVSASLAYCFEVSRTTVTNRDFRLQVLQVLVKLYQSLPAQEHTHICQILQLLDKHAEVATILQSLI 241
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: H3H6T6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H6T6_PHYRM)

HSP 1 Score: 196 bits (497), Expect = 1.030e-57
Identity = 103/230 (44.78%), Postives = 141/230 (61.30%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGL 957
            +++ ++PLIEELSE   FP RELAA VASK FFHLEEY DALRLALGAG Y D++ +S+Y  T+++ CID YV +RA                                         A+DPR+  +VERMF+RCY  GE+ QAMGIALE+RRLD+V+E + R  D  A L+Y  D+C+T+V +R  RL+V  V++ ++R +P  ++ +VCQ LQ+LD    V +IL  L
Sbjct:   41 EIADAIPLIEELSEEKGFPDRELAAYVASKCFFHLEEYEDALRLALGAGKYLDLNTRSQYTDTIIATCIDNYVAVRAKEDTEAEK---------------------------------ALDPRLTHVVERMFERCYAAGEFRQAMGIALETRRLDQVKECLARATDVSAALSYCFDICKTVVSNRHFRLKVFGVMLDVYRSRPTQEYASVCQVLQMLDNHAEVGKILDQL 237
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BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Match: A0A2P4Y4R4_9STRA (26S proteasome non-ATPase regulatory subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y4R4_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.120e-57
Identity = 106/233 (45.49%), Postives = 144/233 (61.80%), Query Frame = 1 
Query:  268 QVSTSVPLIEELSENDAFPARELAAAVASKVFFHLEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVDPRMEAIVERMFDRCYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQSRAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLICG 966
            +++ ++PLIEELSE   FP RELAA VASK FFHLEEY DALRLALGAG YFD++ +S+Y  T+++ CID YV +RA                                         A+DPR+  +VERMF RCY  GE+ QAMGIALE+RRLD+V+E + R  D  A LAY  ++C+T+V +R  RL+V  V+++++R +P  +H +VCQ LQ+LD    V +IL  L+ G
Sbjct:   41 EIADAIPLIEELSEEKNFPDRELAAYVASKCFFHLEEYEDALRLALGAGKYFDLNTRSQYTDTIIATCIDNYVAVRAKEDPEAEK---------------------------------ALDPRLTQVVERMFQRCYAAGEFRQAMGIALEARRLDQVKECLARSTDVSAALAYCFEICKTVVSNRHFRLKVFEVMLEVYRSRPTQEHASVCQVLQMLDNHVEVGKILDQLVRG 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2073.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV53_ECTSI4.940e-7660.52RPN2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6A5A5N9_9STRA1.950e-6048.92Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6G0XH66_9STRA9.320e-6049.78RPN2_C domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A397A0X8_9STRA2.050e-5941.45Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A835YXG5_9STRA1.120e-5852.38Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
W7TZI5_9STRA2.020e-5849.36Armadillo-like helical n=1 Tax=Nannochloropsis gad... [more]
A0A4D9D1A3_9STRA3.400e-5849.79FCP1 homology domain-containing protein n=1 Tax=Na... [more]
A0A024UWU0_9STRA4.410e-5850.22RPN2_C domain-containing protein n=3 Tax=Aphanomyc... [more]
H3H6T6_PHYRM1.030e-5744.78Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P4Y4R4_9STRA1.120e-5745.4926S proteasome non-ATPase regulatory subunit (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2073contigP-wetherbeei_contig2073:2..1548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV53
Preferred nameRPN2
PFAMsPC_rep
Model size1026
Max annot lvl2759|Eukaryota
KEGG koko:K03032
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008540,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030071,GO:0030163,GO:0030674,GO:0031331,GO:0031597,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060090,GO:0062033,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0071944,GO:0090068,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Exons2
Evalue6.25e-78
EggNOG OGsCOG5116@1|root,KOG2062@2759|Eukaryota
Descriptionregulation of protein catabolic process
Cds size807
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.3011653-CDS-P-wetherbeei_contig2073:1..2921683186207.3011653-CDS-P-wetherbeei_contig2073:1..292Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2073 2..292 -
1683186207.3115373-CDS-P-wetherbeei_contig2073:813..13291683186207.3115373-CDS-P-wetherbeei_contig2073:813..1329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2073 814..1329 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.3204522-UTR-P-wetherbeei_contig2073:1329..15481683186207.3204522-UTR-P-wetherbeei_contig2073:1329..1548Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2073 1330..1548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2073.1.1prot_P-wetherbeei_contig2073.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2073 2..1329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2073.1.1

>prot_P-wetherbeei_contig2073.1.1 ID=prot_P-wetherbeei_contig2073.1.1|Name=mRNA_P-wetherbeei_contig2073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
MLLELVAPKKRTQKLLQVSTSVPLIEELSENDAFPARELAAAVASKVFFH
LEEYNDALRLALGAGPYFDVSAKSEYVSTLVSKCIDRYVELRAAAAAEVG
GGGGGGGGSVGVLGGANAVAAAGGEAAAAVAAAVAVDPRMEAIVERMFDR
CYVDGEYAQAMGIALESRRLDKVEETIRRCPDQPALLAYTLDVCQTLVQS
RAVRLRVLRVLVKLHREQPRPDHVAVCQCLQLLDEARLVAEILKGLICGG
TGRTGGAAGAGAAVAAVGE
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mRNA from alignment at P-wetherbeei_contig2073:2..1548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2073.1.1 ID=mRNA_P-wetherbeei_contig2073.1.1|Name=mRNA_P-wetherbeei_contig2073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1547bp|location=Sequence derived from alignment at P-wetherbeei_contig2073:2..1548- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCTGTTGGAGGAGGAGGACGAGATGCTCCGCGTTCATGCCCTCACCC
AGTTGCACGAGGCCGTCGATCAATACTGGGCAGAGGTGAGAGAGACAGAA
AGACTGCTCTGACGAGGACGTCATATCCTCTTATATCCCCCTTTTCCCTA
TTCATCCATTCTTCCATTCATAGCGACACGTGCTTTAATAAGTTCAATAT
ATCCAGCCGATAGCCACGCATGCTCCTCGAGTTGGTTGCGCCCAAAAAAC
GGACCCAAAAATTACTGCAGGTGTCCACATCCGTGCCGCTCATCGAGGAG
CTTAGCGAGAACGACGCCTTCCCCGCGCGCGAGCTGGCGGCCGCCGTCGC
CTCCAAAGTCTTCTTCCATCTGGAGGAGTACAACGATGCGCTGCGCCTCG
CCCTTGGCGCCGGCCCGTACTTTGACGTCTCGGCCAAGTCCGAGTACGTG
TCGACGCTCGTCAGCAAGTGCATCGATCGCTACGTCGAGCTGCGCGCGGC
GGCGGCAGCGGAGGTCGGCGGTGGCGGCGGCGGCGGCGGCGGCTCCGTGG
GGGTGCTTGGCGGGGCCAACGCGGTGGCGGCGGCAGGCGGAGAGGCCGCG
GCGGCAGTGGCGGCGGCGGTGGCCGTCGACCCGCGCATGGAGGCCATCGT
GGAGCGCATGTTCGACCGCTGCTACGTCGACGGCGAGTACGCGCAGGCGA
TGGGCATCGCACTCGAGTCGCGCCGCCTCGACAAGGTCGGTTCAAACTTT
GTTCGGTTGACCGCCGTCTTTCAGCTTTCGAGTTTAAAGGATCGATTGAC
CAAGAAGTGTTGCTTTCGTTGCGGGGTTTGTTGTTTGGCTTTTTTTCCCG
GTGCTCAGGAGACTTGCCTCGCCGCTTTCAGAAGTTTAGGGTTGTTAGGG
AGAGGAAAGGGAAGAGAGGCCAACGGGCCTTGCCTGTGTTTGCAGCCCAG
GCTTGCGTCGCTTAGAGCGTCCCTTTCCTATCGCGCCTCCTTTTCTCGAA
GCACCTTCCGCGTATTTCCATCTCTACGCCGCTGTCGCGGGGATGGTTCT
TGGAGGAACTGCCGCTTTTTGGGGAGGAACATCCGACATGGGCATTCCGA
AACAAGCTTCTTTGCCTCATCTACCTCGATCGATCCTTCGTTTCGCCGAC
GACAGTTTTGCACCGTAACTCACTAGAACTGGCTGCTGCCTTTTCGTGGG
ATCGACATCGTTTGACTTTGTTTTTCCTTCTTCTCATCGGATTCGACCAT
CGGCAGGTGGAGGAGACGATCCGGCGGTGCCCGGACCAGCCGGCGCTTCT
CGCCTACACGCTTGACGTCTGCCAGACCCTCGTGCAGTCGCGTGCCGTTC
GTCTCCGCGTGCTGCGCGTCCTCGTCAAGCTCCACCGCGAGCAGCCGCGG
CCCGACCACGTCGCCGTCTGCCAGTGCCTTCAGCTGCTGGATGAGGCGCG
TCTTGTTGCAGAGATCCTTAAGGGGCTCATCTGTGGCGGAACTGGCAGAA
CAGGTGGCGCTGCCGGCGCAGGGGCGGCGGTTGCGGCGGTGGGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2073:2..1548-

>mRNA_P-wetherbeei_contig2073.1.1 ID=mRNA_P-wetherbeei_contig2073.1.1|Name=mRNA_P-wetherbeei_contig2073.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig2073:2..1548- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCTCGAGTTGGTTGCGCCCAAAAAACGGACCCAAAAATTACTGCA
GGTGTCCACATCCGTGCCGCTCATCGAGGAGCTTAGCGAGAACGACGCCT
TCCCCGCGCGCGAGCTGGCGGCCGCCGTCGCCTCCAAAGTCTTCTTCCAT
CTGGAGGAGTACAACGATGCGCTGCGCCTCGCCCTTGGCGCCGGCCCGTA
CTTTGACGTCTCGGCCAAGTCCGAGTACGTGTCGACGCTCGTCAGCAAGT
GCATCGATCGCTACGTCGAGCTGCGCGCGGCGGCGGCAGCGGAGGTCGGC
GGTGGCGGCGGCGGCGGCGGCGGCTCCGTGGGGGTGCTTGGCGGGGCCAA
CGCGGTGGCGGCGGCAGGCGGAGAGGCCGCGGCGGCAGTGGCGGCGGCGG
TGGCCGTCGACCCGCGCATGGAGGCCATCGTGGAGCGCATGTTCGACCGC
TGCTACGTCGACGGCGAGTACGCGCAGGCGATGGGCATCGCACTCGAGTC
GCGCCGCCTCGACAAGGTGGAGGAGACGATCCGGCGGTGCCCGGACCAGC
CGGCGCTTCTCGCCTACACGCTTGACGTCTGCCAGACCCTCGTGCAGTCG
CGTGCCGTTCGTCTCCGCGTGCTGCGCGTCCTCGTCAAGCTCCACCGCGA
GCAGCCGCGGCCCGACCACGTCGCCGTCTGCCAGTGCCTTCAGCTGCTGG
ATGAGGCGCGTCTTGTTGCAGAGATCCTTAAGGGGCTCATCTGTGGCGGA
ACTGGCAGAACAGGTGGCGCTGCCGGCGCAGGGGCGGCGGTTGCGGCGGT
GGGGGAG
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