mRNA_P-wetherbeei_contig2072.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2072.1.1
Unique NamemRNA_P-wetherbeei_contig2072.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A6H5KB68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KB68_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.910e-63
Identity = 98/138 (71.01%), Postives = 112/138 (81.16%), Query Frame = 2
Query:  449 GPDLGSVSHFLSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAGGK 862
            G  +G VS++LSLRLDRP+EGC LRPR YVYSK +T TG+ANKAY+ TDH  +Y W RGPERQVCAN SCPRA+SFSPLEWS +ALQG+RIQC+ CHKL+VPRHRSVFCN  CFKEAWK HQQ H  +R Q   A GK
Sbjct:   47 GMAVGHVSNYLSLRLDRPLEGCQLRPRVYVYSKLMTTTGVANKAYSNTDHRFQYTWSRGPERQVCANASCPRANSFSPLEWSKWALQGTRIQCVPCHKLRVPRHRSVFCNVTCFKEAWKSHQQHHEHVRRQQALATGK 184          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A835Z3I4_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I4_9STRA)

HSP 1 Score: 173 bits (438), Expect = 8.820e-46
Identity = 73/100 (73.00%), Postives = 86/100 (86.00%), Query Frame = 2
Query:  527 RAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHV 826
            RAYVYS Q T+TG+ANKAY+Q+DH  +++W RGPERQ CAN  CPRA SFSPLEWSTYALQG RIQCI+C +LKVPRH+S+FCNAKCFK+AWKEH+  H 
Sbjct:   11 RAYVYSTQRTSTGLANKAYSQSDHTFEFKWYRGPERQACANALCPRAASFSPLEWSTYALQGCRIQCIICSRLKVPRHKSIFCNAKCFKQAWKEHRATHA 110          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: W7UA28_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA28_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.220e-33
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 2
Query:  479 LSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSR--IQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAG 856
            L++RLDRPVEGC++ P AY+Y K     G   +  ++     +YRWLRGPER VCAN +CPRA SF+P++WS +A +G    IQC+VC KL++PRH SVFC  +CF++AWK H++ H   R ++  +G
Sbjct:   22 LNVRLDRPVEGCLISPHAYLYQK-----GEKGQQRDKERFNYRYRWLRGPERPVCANTACPRAQSFNPIQWSKFARKGCSFLIQCVVCAKLRLPRHHSVFCTLQCFQDAWKNHKRIHQMGRTRSANSG 144          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A6S9ETF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ETF7_HETAK)

HSP 1 Score: 137 bits (344), Expect = 7.160e-33
Identity = 64/141 (45.39%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  479 LSLRLDRPVEGCMLRPRAYVYSKQL-----------TATGIANKAYNQTD--------------HVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHV 826
            LSLRL+RP+E C L+PRAY++ K +            AT   +  Y+ T               H   Y+WLRGPERQVCANP+CPRA SFSP++WS  A  G R+QC+ C KLK+PRH S+FC   C ++AW  H+  H+
Sbjct:   18 LSLRLERPIEACELQPRAYLFIKGVGAALNNRGGNQVATSGGSDNYSSTQKAAMAAAGFSLNEPHYFNYKWLRGPERQVCANPTCPRARSFSPVDWSKRARSGHRLQCVCCMKLKLPRHTSIFCTPACMQQAWPSHKYRHI 158          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S2PG38_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG38_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.040e-23
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 2
Query:  440 NNGGPDLGSVSHFLSLRLDRPVEGCMLRPRAYVYSKQL---TATGIANKAYNQT--DHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGS-RIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
            N+ G   G   H LSLR+DRPVEGC LRP AY+YSK++   +  G  +K        H   YRWLRGP+++ CA   CPR  SFSP +WS +AL+G   +QC+     +   +R+ FCN+ CFK AWK
Sbjct:    2 NSSGKGDGYTWH-LSLRVDRPVEGCTLRPHAYMYSKKIDEKSRDGPESKMMRTVIPPHDFHYRWLRGPKQEPCAYMKCPRRTSFSPHDWSKFALRGGYSLQCV---SQQSSLYRATFCNSNCFKHAWK 125          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: K0SZX4_THAOC (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZX4_THAOC)

HSP 1 Score: 110 bits (274), Expect = 1.870e-23
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  470 SHFLSLRLDRPVEGCMLRPRAYVYSKQLT-ATGIANKAYNQT------DHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
            S  LSLR+DRPVEGC LRP AY+Y K+L       N A+++       +H   YRW +GP    CA   CPR  SFSP +WSTY+L G+ +  + C   +   +R+ FCN +CF +AWK
Sbjct:    9 SWHLSLRVDRPVEGCTLRPHAYMYGKKLDDREANGNHAHSKICREPPPNHEFSYRWFKGPPVDPCAYDECPRRSSFSPHDWSTYSLGGTGVLSLQCISSQSSLYRATFCNPQCFVQAWK 127          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7R9ZDF3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9ZDF3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.380e-23
Identity = 54/135 (40.00%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  479 LSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTD--------HVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAGG 859
            LSLR DRPVEGC +RP AY+Y K+L            +         H   YRW RGP  + CA   CPR  SFSP +WS +AL GS    + C   +   +RS FCN+ CF +AWK     H +  +     GG
Sbjct:   21 LSLRADRPVEGCAVRPHAYMYGKKLDEREYDRPVPPHSKKCAGPPPAHEFSYRWYRGPPSEPCAFSGCPRRTSFSPHDWSIHALGGSGCS-LQCVSARSSLYRSTFCNSNCFVQAWKTQYTVHRDPPQSRAALGG 154          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S1FRM5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRM5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.060e-23
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 2
Query:  449 GPDLGSVSHFLSLRLDRPVEGCMLRPRAYVYSKQLTATGI-------ANKAYNQ-TDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGS-RIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
            G D G   H LSLR+DRPVEGC +RP AY+YSK+L    +       + +A +Q T H   +RW RGP ++ CA   CPR  SFSP +WS+YAL G   +QCI     +   +++ FCN+ CF +AWK
Sbjct:    4 GKDCGYTWH-LSLRVDRPVEGCNMRPHAYMYSKKLDERDLDKPMPPYSKRAPHQPTQHEFHFRWFRGPMQEPCAFSGCPRRTSFSPHDWSSYALGGGCGLQCI---STQSSLYKANFCNSNCFVQAWK 127          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S1YZS8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZS8_TRICV)

HSP 1 Score: 105 bits (263), Expect = 6.070e-22
Identity = 57/135 (42.22%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  479 LSLRLDRPVEGCMLRPRAYVYSKQLTA-------TGIANKAYNQT-DHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAGG 859
            LSLR+DRPVEGC +RP AY+Y K+L         T  + + +     H   YRWLRGP  + CA   CPR  SFSP +WS +AL GS    + C   +   ++S FCN+ CF +AWK     H   R+  Q  GG
Sbjct:   16 LSLRVDRPVEGCAVRPHAYMYGKKLDERDYDRPLTAHSKRCHGPPPSHEFSYRWLRGPPCEPCAYEGCPRRTSFSPNDWSVHALGGSGCS-LQCVSSRSSLYKSTFCNSNCFVQAWKTQYTVH---RDPPQSRGG 146          
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S2Y517_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y517_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.740e-21
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  470 SHFLSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTDHVLK---------YRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGS--RIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
            S  LSLR+DRPVEGC +RP +Y+Y K+L       KA      V+K         YRW RGP  + CA  +CPR  SFSP +WS +AL G+   +QC+     +   ++  FCN+KCF  AWK
Sbjct:    9 SWHLSLRVDRPVEGCAIRPHSYMYGKKLDEREYHEKASQPHTKVMKEPPPSHEFSYRWFRGPLHEACAYEACPRRSSFSPHDWSKHALGGTDCTLQCV---STQSSLYKCTFCNSKCFVNAWK 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KB68_9PHAE1.910e-6371.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3I4_9STRA8.820e-4673.00Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
W7UA28_9STRA1.220e-3349.22Endonuclease/exonuclease/phosphatase n=1 Tax=Nanno... [more]
A0A6S9ETF7_HETAK7.160e-3345.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2PG38_9STRA1.040e-2346.09Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K0SZX4_THAOC1.870e-2344.54Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7R9ZDF3_9STRA4.380e-2340.00Hypothetical protein (Fragment) n=2 Tax=Odontellac... [more]
A0A7S1FRM5_9STRA6.060e-2345.31Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1YZS8_TRICV6.070e-2242.22Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2Y517_9STRA2.740e-2143.09Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2072contigP-wetherbeei_contig2072:4093..5681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3Q4
PFAMsExo_endo_phos,zf-C6H2
Model size862
Max annot lvl2759|Eukaryota
KEGG koko:K12603
KEGG Pathwayko03018,map03018
Hectar predicted targeting categorymitochondrion
GOsGO:0000271,GO:0000932,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005985,GO:0005986,GO:0006073,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009311,GO:0009312,GO:0009987,GO:0010467,GO:0016051,GO:0016070,GO:0016071,GO:0019252,GO:0032991,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1990904
Exons3
Evalue1.08e-52
EggNOG OGsCOG5239@1|root,KOG0620@2759|Eukaryota
EC3.1.13.4
Descriptionpoly(A)-specific ribonuclease activity
Cds size348
COG categoryA
BRITEko00000,ko00001,ko01000,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.1892323-UTR-P-wetherbeei_contig2072:4092..46061683186207.1892323-UTR-P-wetherbeei_contig2072:4092..4606Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2072 4093..4606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186207.1991072-CDS-P-wetherbeei_contig2072:4606..47291683186207.1991072-CDS-P-wetherbeei_contig2072:4606..4729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2072 4607..4729 +
1683186207.2072532-CDS-P-wetherbeei_contig2072:5174..53201683186207.2072532-CDS-P-wetherbeei_contig2072:5174..5320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2072 5175..5320 +
1683186207.2154074-CDS-P-wetherbeei_contig2072:5602..56811683186207.2154074-CDS-P-wetherbeei_contig2072:5602..5681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2072 5603..5681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2072.1.1prot_P-wetherbeei_contig2072.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2072 4607..5681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2072.1.1

>prot_P-wetherbeei_contig2072.1.1 ID=prot_P-wetherbeei_contig2072.1.1|Name=mRNA_P-wetherbeei_contig2072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MLRPRAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPR
ADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQ
QAHVELREQAQGAGGK
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mRNA from alignment at P-wetherbeei_contig2072:4093..5681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2072.1.1 ID=mRNA_P-wetherbeei_contig2072.1.1|Name=mRNA_P-wetherbeei_contig2072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1589bp|location=Sequence derived from alignment at P-wetherbeei_contig2072:4093..5681+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGTTGTTAAGCATGAGAGTTTCAAAGTTTTTGGTGAGCTTCCGTTGTT GGGGCACAGCCGGCGGTCCAATCAAGTGCTCTGTGTCACACCGGCTGCCG AAAAGCTGTGAATTAAATTTGCAAAAAGGAGCTCTGTGTGATGCTGAGGG GCACTCAAGATCTTGGTCTGTGTGTGGGATTTAGCAAGGGATATGTACCG GAGCATCCGTTTTTTAATACTGAAAACCCTTCTCAAATCGCCGGCTGCAC GCTTTCTATTCGCTGTTCCTTCGCTGTGTACTCAACGTGTCTCTTTCGTA CCTATTCTGCCTGCGACGCCACCGCTCCCAAAACCGGCAACCGTTACAAA AATCCCAATCCTGGAAATTCTTGCCGAAACCGGCACCAAACCTGGTGCGG CCTCAACCTCGGCAGCTGTTCCTGAGCAACAATGGCAACAACAATGGCGG GCCGGACCTGGGGAGTGTGTCGCACTTCCTCTCGTTGCGGCTGGACCGGC CGGTGGAGGGGTGCATGCTGCGGCCACGGGCTTACGTCTACTCGAAGCAG CTGACGGCGACGGGCATCGCCAACAAGGCCTACAACCAGACCGACCACGT GCTCAAGTACCGCTGGCTCCGGGGTCCCGAGCGGCAGGTCAGCCATTATA GTTGCTCTAGGTTTTTCCTCCCTGTTATTCCCTGAATATTTCTGTATTTA CTTTCGAGCACGGAAGCTTCTGTCTGCGTGTCACGCGGCGATCCACGTTA CCCAATATTTTTGGTCGTGGTGCGCGTTTAGTTTTGTCGCTGCATTCGGT GCTTTGGGTGATGAATGGTGCTAGAGCTGTCTGTCGTGAATCTCTGCTGG TGATTATCGCTTTGCTTTGAGGTGTTATGTTTCCTTTGAAAACGAGAGCG TCCAGGCTCTGCCGGGCTTGGGGCGTTCAAGCCGCCGTTGCGATTCCGCA AGGGAAGAAATATCGAACAAGCGGCCATGTTGTTCCCTTTCTGTCATTCC TTGGGAACGCACCACACCGAACCGTCAAGTTTTCCACCTGCGCGTTGCGG CGGATCGCGATTTTGGCCGTTTGTGCCGACAGGTGTGCGCGAACCCGAGC TGCCCGCGGGCGGACAGCTTCAGCCCGCTGGAGTGGTCGACGTACGCGCT GCAAGGCTCGCGCATCCAGTGCATTGTTTGCCACAAGCTCAAGGTGCCGC GCCACCGATCCGTCTTCTGCAACGCCAAGTGAGTCACTTGGCACATACTA GTATAATGGATGGCATTCTATCTTGTAACTTTGCTGCATAGGACGAGGAT CAGTGGTTTCGTAGGGAGCAGGCCTGATTCGATAGCTTACCTTCTTTCTC CTCAGCCCTACGAAGTGCTGGTAGCTTCATTTTATCGAATGGGCGTTTGC AGTCATCAACCACTGAGGTATGTGATCGGGTTTTCTTACATGTTGTGCTC ATGCGACGCCTCTACCGGTTCTCTGCCGGACTTCACCCACCTCGGCTCTG TGCCCGGCAGGTGCTTCAAGGAGGCGTGGAAGGAGCACCAACAGGCGCAC GTGGAGCTGCGAGAGCAGGCGCAGGGGGCGGGCGGCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2072:4093..5681+

>mRNA_P-wetherbeei_contig2072.1.1 ID=mRNA_P-wetherbeei_contig2072.1.1|Name=mRNA_P-wetherbeei_contig2072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig2072:4093..5681+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGGCCACGGGCTTACGTCTACTCGAAGCAGCTGACGGCGACGGG
CATCGCCAACAAGGCCTACAACCAGACCGACCACGTGCTCAAGTACCGCT
GGCTCCGGGGTCCCGAGCGGCAGGTGTGCGCGAACCCGAGCTGCCCGCGG
GCGGACAGCTTCAGCCCGCTGGAGTGGTCGACGTACGCGCTGCAAGGCTC
GCGCATCCAGTGCATTGTTTGCCACAAGCTCAAGGTGCCGCGCCACCGAT
CCGTCTTCTGCAACGCCAAGTGCTTCAAGGAGGCGTGGAAGGAGCACCAA
CAGGCGCACGTGGAGCTGCGAGAGCAGGCGCAGGGGGCGGGCGGCAAG
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