mRNA_P-wetherbeei_contig2072.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A6H5KB68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KB68_9PHAE) HSP 1 Score: 215 bits (548), Expect = 1.910e-63 Identity = 98/138 (71.01%), Postives = 112/138 (81.16%), Query Frame = 2
Query: 449 GPDLGSVSHFLSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAGGK 862
G +G VS++LSLRLDRP+EGC LRPR YVYSK +T TG+ANKAY+ TDH +Y W RGPERQVCAN SCPRA+SFSPLEWS +ALQG+RIQC+ CHKL+VPRHRSVFCN CFKEAWK HQQ H +R Q A GK
Sbjct: 47 GMAVGHVSNYLSLRLDRPLEGCQLRPRVYVYSKLMTTTGVANKAYSNTDHRFQYTWSRGPERQVCANASCPRANSFSPLEWSKWALQGTRIQCVPCHKLRVPRHRSVFCNVTCFKEAWKSHQQHHEHVRRQQALATGK 184
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A835Z3I4_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I4_9STRA) HSP 1 Score: 173 bits (438), Expect = 8.820e-46 Identity = 73/100 (73.00%), Postives = 86/100 (86.00%), Query Frame = 2
Query: 527 RAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHV 826
RAYVYS Q T+TG+ANKAY+Q+DH +++W RGPERQ CAN CPRA SFSPLEWSTYALQG RIQCI+C +LKVPRH+S+FCNAKCFK+AWKEH+ H
Sbjct: 11 RAYVYSTQRTSTGLANKAYSQSDHTFEFKWYRGPERQACANALCPRAASFSPLEWSTYALQGCRIQCIICSRLKVPRHKSIFCNAKCFKQAWKEHRATHA 110
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: W7UA28_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA28_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.220e-33 Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 2
Query: 479 LSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSR--IQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAG 856
L++RLDRPVEGC++ P AY+Y K G + ++ +YRWLRGPER VCAN +CPRA SF+P++WS +A +G IQC+VC KL++PRH SVFC +CF++AWK H++ H R ++ +G
Sbjct: 22 LNVRLDRPVEGCLISPHAYLYQK-----GEKGQQRDKERFNYRYRWLRGPERPVCANTACPRAQSFNPIQWSKFARKGCSFLIQCVVCAKLRLPRHHSVFCTLQCFQDAWKNHKRIHQMGRTRSANSG 144
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A6S9ETF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ETF7_HETAK) HSP 1 Score: 137 bits (344), Expect = 7.160e-33 Identity = 64/141 (45.39%), Postives = 84/141 (59.57%), Query Frame = 2
Query: 479 LSLRLDRPVEGCMLRPRAYVYSKQL-----------TATGIANKAYNQTD--------------HVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHV 826
LSLRL+RP+E C L+PRAY++ K + AT + Y+ T H Y+WLRGPERQVCANP+CPRA SFSP++WS A G R+QC+ C KLK+PRH S+FC C ++AW H+ H+
Sbjct: 18 LSLRLERPIEACELQPRAYLFIKGVGAALNNRGGNQVATSGGSDNYSSTQKAAMAAAGFSLNEPHYFNYKWLRGPERQVCANPTCPRARSFSPVDWSKRARSGHRLQCVCCMKLKLPRHTSIFCTPACMQQAWPSHKYRHI 158
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S2PG38_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG38_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.040e-23 Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 2
Query: 440 NNGGPDLGSVSHFLSLRLDRPVEGCMLRPRAYVYSKQL---TATGIANKAYNQT--DHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGS-RIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
N+ G G H LSLR+DRPVEGC LRP AY+YSK++ + G +K H YRWLRGP+++ CA CPR SFSP +WS +AL+G +QC+ + +R+ FCN+ CFK AWK
Sbjct: 2 NSSGKGDGYTWH-LSLRVDRPVEGCTLRPHAYMYSKKIDEKSRDGPESKMMRTVIPPHDFHYRWLRGPKQEPCAYMKCPRRTSFSPHDWSKFALRGGYSLQCV---SQQSSLYRATFCNSNCFKHAWK 125
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: K0SZX4_THAOC (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZX4_THAOC) HSP 1 Score: 110 bits (274), Expect = 1.870e-23 Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 2
Query: 470 SHFLSLRLDRPVEGCMLRPRAYVYSKQLT-ATGIANKAYNQT------DHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
S LSLR+DRPVEGC LRP AY+Y K+L N A+++ +H YRW +GP CA CPR SFSP +WSTY+L G+ + + C + +R+ FCN +CF +AWK
Sbjct: 9 SWHLSLRVDRPVEGCTLRPHAYMYGKKLDDREANGNHAHSKICREPPPNHEFSYRWFKGPPVDPCAYDECPRRSSFSPHDWSTYSLGGTGVLSLQCISSQSSLYRATFCNPQCFVQAWK 127
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7R9ZDF3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9ZDF3_9STRA) HSP 1 Score: 102 bits (253), Expect = 4.380e-23 Identity = 54/135 (40.00%), Postives = 68/135 (50.37%), Query Frame = 2
Query: 479 LSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTD--------HVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAGG 859
LSLR DRPVEGC +RP AY+Y K+L + H YRW RGP + CA CPR SFSP +WS +AL GS + C + +RS FCN+ CF +AWK H + + GG
Sbjct: 21 LSLRADRPVEGCAVRPHAYMYGKKLDEREYDRPVPPHSKKCAGPPPAHEFSYRWYRGPPSEPCAFSGCPRRTSFSPHDWSIHALGGSGCS-LQCVSARSSLYRSTFCNSNCFVQAWKTQYTVHRDPPQSRAALGG 154
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S1FRM5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRM5_9STRA) HSP 1 Score: 108 bits (270), Expect = 6.060e-23 Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 2
Query: 449 GPDLGSVSHFLSLRLDRPVEGCMLRPRAYVYSKQLTATGI-------ANKAYNQ-TDHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGS-RIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
G D G H LSLR+DRPVEGC +RP AY+YSK+L + + +A +Q T H +RW RGP ++ CA CPR SFSP +WS+YAL G +QCI + +++ FCN+ CF +AWK
Sbjct: 4 GKDCGYTWH-LSLRVDRPVEGCNMRPHAYMYSKKLDERDLDKPMPPYSKRAPHQPTQHEFHFRWFRGPMQEPCAFSGCPRRTSFSPHDWSSYALGGGCGLQCI---STQSSLYKANFCNSNCFVQAWK 127
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S1YZS8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZS8_TRICV) HSP 1 Score: 105 bits (263), Expect = 6.070e-22 Identity = 57/135 (42.22%), Postives = 74/135 (54.81%), Query Frame = 2
Query: 479 LSLRLDRPVEGCMLRPRAYVYSKQLTA-------TGIANKAYNQT-DHVLKYRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGSRIQCIVCHKLKVPRHRSVFCNAKCFKEAWKEHQQAHVELREQAQGAGG 859
LSLR+DRPVEGC +RP AY+Y K+L T + + + H YRWLRGP + CA CPR SFSP +WS +AL GS + C + ++S FCN+ CF +AWK H R+ Q GG
Sbjct: 16 LSLRVDRPVEGCAVRPHAYMYGKKLDERDYDRPLTAHSKRCHGPPPSHEFSYRWLRGPPCEPCAYEGCPRRTSFSPNDWSVHALGGSGCS-LQCVSSRSSLYKSTFCNSNCFVQAWKTQYTVH---RDPPQSRGG 146
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Match: A0A7S2Y517_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y517_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.740e-21 Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 2
Query: 470 SHFLSLRLDRPVEGCMLRPRAYVYSKQLTATGIANKAYNQTDHVLK---------YRWLRGPERQVCANPSCPRADSFSPLEWSTYALQGS--RIQCIVCHKLKVPRHRSVFCNAKCFKEAWK 805
S LSLR+DRPVEGC +RP +Y+Y K+L KA V+K YRW RGP + CA +CPR SFSP +WS +AL G+ +QC+ + ++ FCN+KCF AWK
Sbjct: 9 SWHLSLRVDRPVEGCAIRPHSYMYGKKLDEREYHEKASQPHTKVMKEPPPSHEFSYRWFRGPLHEACAYEACPRRSSFSPHDWSKHALGGTDCTLQCV---STQSSLYKCTFCNSKCFVNAWK 128 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2072.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig2072.1.1 >prot_P-wetherbeei_contig2072.1.1 ID=prot_P-wetherbeei_contig2072.1.1|Name=mRNA_P-wetherbeei_contig2072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp MLRPRAYVYSKQLTATGIANKAYNQTDHVLKYRWLRGPERQVCANPSCPRback to top mRNA from alignment at P-wetherbeei_contig2072:4093..5681+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig2072.1.1 ID=mRNA_P-wetherbeei_contig2072.1.1|Name=mRNA_P-wetherbeei_contig2072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1589bp|location=Sequence derived from alignment at P-wetherbeei_contig2072:4093..5681+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig2072:4093..5681+ >mRNA_P-wetherbeei_contig2072.1.1 ID=mRNA_P-wetherbeei_contig2072.1.1|Name=mRNA_P-wetherbeei_contig2072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig2072:4093..5681+ (Phaeothamnion wetherbeei SAG_119_79)back to top |