mRNA_P-wetherbeei_contig20666.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20666.1.1
Unique NamemRNA_P-wetherbeei_contig20666.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: UPI00097CBF26 (2,4'-dihydroxyacetophenone dioxygenase family protein n=1 Tax=Variovorax sp. KK3 TaxID=1855728 RepID=UPI00097CBF26)

HSP 1 Score: 181 bits (458), Expect = 2.360e-56
Identity = 82/110 (74.55%), Postives = 94/110 (85.45%), Query Frame = 1
Query:    1 KLRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVIGLPPDWEG 330
            +LRTH+H+GHV+AWTLAG+W Y+EYP++S ANS+LYEPAGSTHTL VPEDS EPADVIFIVHGSN+EL   G+  G T A  IARAYLRAC E+GLPRPDVIGLP DW G
Sbjct:   54 RLRTHLHSGHVYAWTLAGTWKYIEYPEASTANSFLYEPAGSTHTLVVPEDSPEPADVIFIVHGSNVELDEDGKIVGVTDAAAIARAYLRACEEQGLPRPDVIGLPADWRG 163          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A523FK88_9PROT (Cupin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FK88_9PROT)

HSP 1 Score: 118 bits (295), Expect = 1.320e-31
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    4 LRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVIGL 312
            ++ H HTG V A+T AG+W YLEYP+ +   SYLYEPAGS HTLHVPED+ E  DV F+V G+N++L   G  E    A  I   YL  C+E+G P+PDVIG+
Sbjct:   60 IQIHKHTGDVHAFTHAGAWKYLEYPEVNTKGSYLYEPAGSIHTLHVPEDNKEITDVTFVVSGANLDLDEEGNVENVLDAGAIREIYLARCKEEGHPKPDVIGI 162          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A7X5WRL2_9ACTN (Cupin n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WRL2_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 1.530e-30
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    4 LRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVI 306
            ++TH HTG VF +TL+G+W Y EYP  + A S+L+EPAGS HTL VP+D+ EP DV F +HG+N+ L A G  E  T A  I +AY+  C  +GL RP+V+
Sbjct:   49 VQTHKHTGQVFGYTLSGAWRYAEYPYVNRAGSFLFEPAGSQHTLVVPDDNTEPTDVWFQIHGANLNLDADGNVESITDAAGIYQAYMALCEAQGLDRPNVL 149          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A3M2GZL3_ACTSX (Cupin n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GZL3_ACTSX)

HSP 1 Score: 114 bits (286), Expect = 2.360e-30
Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   10 THIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVI 306
            TH HTG V+A TLAGSW Y EYP+ + A S+LYEP GS HTL VP D+  P DVIF +HG+N+ L A G  E  T    +  AYL  C   GLPRP VI
Sbjct:   54 THRHTGAVYAHTLAGSWKYAEYPEVNRAGSFLYEPPGSVHTLTVPADNDGPTDVIFQIHGANLNLDADGRVESVTDGPGVLAAYLAVCEAAGLPRPPVI 152          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A6B1EAT3_9ACTN (Cupin n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EAT3_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 1.470e-29
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    4 LRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVI 306
            ++TH HTG V+A TL+G+W YLEYP+ + A S+L+EPAGS HTL  P D+ EP DV F +HG N+ L A G  E  T    +  AY   C  +GLPRP+V+
Sbjct:   55 IQTHRHTGPVYAHTLSGAWKYLEYPEVNRAGSFLFEPAGSVHTLTTPADNTEPTDVWFQIHGVNLNLDADGNVESITDGPGVLAAYYAMCEAQGLPRPNVV 155          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A7X7D2T2_9ACTN (Cupin n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D2T2_9ACTN)

HSP 1 Score: 110 bits (276), Expect = 2.130e-29
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 KLRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVIGLPP 318
            +++TH HTG V A+T +GSW Y EYP+ + A SYL+EPAGSTHTL VPE + E  DV F+V+G+N+ L A G  E    A  +   Y   C + G+P P VIG PP
Sbjct:    2 QVQTHRHTGAVHAFTTSGSWKYAEYPEVNTAGSYLFEPAGSTHTLVVPESNAEVTDVRFVVYGANLNLDAEGRVELVVDAQLVLDFYRSMCAQAGVPDPPVIGAPP 107          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A536V0W0_9PROT (Cupin n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536V0W0_9PROT)

HSP 1 Score: 112 bits (279), Expect = 4.330e-29
Identity = 55/102 (53.92%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    4 LRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVIG 309
            L TH H G VFA+TL GSW YLEYP+ + A SYLYEPAGS HTLHVP  + E  DV F + G N+ L A G       A  + + YL  CR  GLPRP V+G
Sbjct:   68 LPTHRHGGEVFAFTLTGSWKYLEYPEVNTAGSYLYEPAGSIHTLHVPATNTEVTDVWFAIRGPNLNLDAGGNVTLILDAGLVLKVYLSRCRNLGLPRPQVVG 169          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: J2WZ27_9PSED (Cupin_7 domain-containing protein n=1 Tax=Pseudomonas sp. GM78 TaxID=1144337 RepID=J2WZ27_9PSED)

HSP 1 Score: 111 bits (277), Expect = 6.610e-29
Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   13 HIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVIGL 312
            H HTG V+A T +GSW YLEYPQ ++A SYLYEPAGS HTLHVP  + EP +V F ++G+N+ L      E       I   YL  CR+ G P P+VIGL
Sbjct:   61 HKHTGDVYAVTFSGSWKYLEYPQVNIAGSYLYEPAGSMHTLHVPASNTEPTEVWFAINGANLNLDEQDNVESIWDTSFITALYLEECRKAGFPVPEVIGL 160          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A147GRB2_9BURK (Cupin_7 domain-containing protein n=1 Tax=Pseudacidovorax intermedius TaxID=433924 RepID=A0A147GRB2_9BURK)

HSP 1 Score: 110 bits (274), Expect = 2.270e-28
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    4 LRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPDVIG 309
            L TH HTG V+A+T+AGSW YLEYP+ ++A SYLYEPAGS HTLHVP  + EP DV F + G N+ L   G       A  +   Y   CR+ GL  P VIG
Sbjct:   65 LPTHKHTGEVYAFTIAGSWRYLEYPEVNVAGSYLYEPAGSVHTLHVPATNKEPTDVWFAIRGPNLNLDEDGNVSLVFDAAFVLSVYRSRCRKMGLAVPKVIG 166          
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Match: A0A7K1B999_9ACTN (Cupin n=2 Tax=root TaxID=1 RepID=A0A7K1B999_9ACTN)

HSP 1 Score: 109 bits (272), Expect = 5.810e-28
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    4 LRTHIHTGHVFAWTLAGSWHYLEYPQS-SLANSYLYEPAGSTHTLHVPEDSLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRAC-REKGLPRPDVI 306
            +RTH HTG V A+TLAG WHYLEYP   + A SYL+EPAGS HTLHVP D+  P DV FI+HG+N+ L   GE    T A  + R Y   C ++ G+  P V+
Sbjct:   70 IRTHRHTGAVHAFTLAGRWHYLEYPDDVNEAGSYLFEPAGSVHTLHVPADNDGPTDVFFIIHGANLNLDDAGEVVSVTDAHSVLRVYRSLCGQQHGVDDPPVV 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20666.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00097CBF262.360e-5674.552,4'-dihydroxyacetophenone dioxygenase family prot... [more]
A0A523FK88_9PROT1.320e-3153.40Cupin n=1 Tax=Alphaproteobacteria bacterium TaxID=... [more]
A0A7X5WRL2_9ACTN1.530e-3051.49Cupin n=1 Tax=Actinomycetia bacterium TaxID=188342... [more]
A0A3M2GZL3_ACTSX2.360e-3055.56Cupin n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0... [more]
A0A6B1EAT3_9ACTN1.470e-2950.50Cupin n=8 Tax=Acidimicrobiaceae bacterium TaxID=20... [more]
A0A7X7D2T2_9ACTN2.130e-2950.00Cupin n=1 Tax=Acidimicrobiales bacterium TaxID=220... [more]
A0A536V0W0_9PROT4.330e-2953.92Cupin n=1 Tax=Betaproteobacteria bacterium TaxID=1... [more]
J2WZ27_9PSED6.610e-2952.00Cupin_7 domain-containing protein n=1 Tax=Pseudomo... [more]
A0A147GRB2_9BURK2.270e-2851.96Cupin_7 domain-containing protein n=1 Tax=Pseudaci... [more]
A0A7K1B999_9ACTN5.810e-2852.43Cupin n=2 Tax=root TaxID=1 RepID=A0A7K1B999_9ACTN[more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20666contigP-wetherbeei_contig20666:1..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1042375.AFPL01000038_gene1544
PFAMsCupin_7
Model size333
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.23e-23
EggNOG OGsCOG1917@1|root,COG1917@2|Bacteria,1N0BS@1224|Proteobacteria,1SBE0@1236|Gammaproteobacteria
DescriptionCupin 2, conserved barrel domain protein
Cds size333
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.9561183-CDS-P-wetherbeei_contig20666:0..3331683186205.9561183-CDS-P-wetherbeei_contig20666:0..333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20666 1..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20666.1.1prot_P-wetherbeei_contig20666.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20666 1..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20666.1.1

>prot_P-wetherbeei_contig20666.1.1 ID=prot_P-wetherbeei_contig20666.1.1|Name=mRNA_P-wetherbeei_contig20666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
KLRTHIHTGHVFAWTLAGSWHYLEYPQSSLANSYLYEPAGSTHTLHVPED
SLEPADVIFIVHGSNIELGATGEFEGATSAMDIARAYLRACREKGLPRPD
VIGLPPDWEG*
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mRNA from alignment at P-wetherbeei_contig20666:1..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20666.1.1 ID=mRNA_P-wetherbeei_contig20666.1.1|Name=mRNA_P-wetherbeei_contig20666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig20666:1..333+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTGCGTACGCATATTCATACCGGCCACGTCTTCGCGTGGACGCTGGC GGGCAGCTGGCACTACCTGGAATACCCGCAGAGCAGCCTTGCCAACTCCT ACCTTTACGAGCCGGCCGGCTCGACCCATACCCTGCATGTGCCTGAGGAC AGCCTTGAGCCGGCCGACGTGATCTTCATCGTGCACGGCTCCAATATCGA ACTCGGAGCGACGGGCGAGTTCGAGGGCGCGACCAGCGCTATGGATATCG CGCGCGCCTACCTGAGGGCGTGCCGGGAGAAGGGCCTGCCGCGTCCGGAT GTGATCGGGCTGCCGCCCGACTGGGAAGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20666:1..333+

>mRNA_P-wetherbeei_contig20666.1.1 ID=mRNA_P-wetherbeei_contig20666.1.1|Name=mRNA_P-wetherbeei_contig20666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig20666:1..333+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTGCGTACGCATATTCATACCGGCCACGTCTTCGCGTGGACGCTGGC
GGGCAGCTGGCACTACCTGGAATACCCGCAGAGCAGCCTTGCCAACTCCT
ACCTTTACGAGCCGGCCGGCTCGACCCATACCCTGCATGTGCCTGAGGAC
AGCCTTGAGCCGGCCGACGTGATCTTCATCGTGCACGGCTCCAATATCGA
ACTCGGAGCGACGGGCGAGTTCGAGGGCGCGACCAGCGCTATGGATATCG
CGCGCGCCTACCTGAGGGCGTGCCGGGAGAAGGGCCTGCCGCGTCCGGAT
GTGATCGGGCTGCCGCCCGACTGGGAAGGCTGA
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