mRNA_P-wetherbeei_contig20661.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20661.1.1
Unique NamemRNA_P-wetherbeei_contig20661.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: D7G468_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G468_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 2.170e-45
Identity = 84/126 (66.67%), Postives = 98/126 (77.78%), Query Frame = 1 
Query:    1 MAKTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYFKRVKTEKKNDEGDGFFATPAK 378
             AK P+WY+ +DVK  PK   +K NP KLR++ITPGT+LILLSGRFRGKRV+FLKQL SG LLVTGPY VNGVP+RRVNQAYVIAT+  VD+SKVT+P  DD+YF R +   K DE D FF   AK
Sbjct:    8 QAKAPKWYSGDDVK--PKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDE-DQFFEQGAK 130
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: RL6_MESCR (60S ribosomal protein L6 n=2 Tax=Caryophyllales TaxID=3524 RepID=RL6_MESCR)

HSP 1 Score: 155 bits (391), Expect = 5.420e-45
Identity = 84/121 (69.42%), Postives = 100/121 (82.64%), Query Frame = 1 
Query:    1 MAKTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYFKRVKTEKKNDEGDGFF 363
            + K P++Y  +DVK+P   NKRKP P KLRASITPGTVLI+L+GRF+GKRV+FLKQL+SG LLVTGP+KVNGVPLRRVNQAYVIAT+TKVD+S V V   DD YF + K EKKN +G+G F
Sbjct:   59 VEKPPKFYPADDVKKP-LINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGK-KAEKKNKKGEGEF 177
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: A0A6I9U9H1_SESIN (60S ribosomal protein L6 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9U9H1_SESIN)

HSP 1 Score: 153 bits (386), Expect = 2.680e-44
Identity = 84/121 (69.42%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:    7 KTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYF-KRVKTEKKNDEGDGFFA 366
            K P++Y  +DVK+P   NKRKP P KLRASITPGTVLI+LSGRF+GKRV+FLKQL+SG LLVTGPYK+NGVPLRRVNQAYVIAT+TKVD+S V V   DD YF K+V+ +KK  E + F A
Sbjct:   56 KPPKFYPADDVKKPLS-NKRKPKPTKLRASITPGTVLIILSGRFKGKRVVFLKQLSSGLLLVTGPYKINGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFAKQVEKKKKKGENEFFEA 175
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: A0A1Y1Y1J0_9FUNG (60S ribosomal protein L6 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y1J0_9FUNG)

HSP 1 Score: 153 bits (386), Expect = 3.450e-44
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:    1 MAKTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPD-IDDAYFKRVKTEKKNDEGDGFF 363
            + K  RWY  EDV QP K++++   P KLR SITPGTVL+LL+GRFRGKRV+FLKQLASG LLVTGPYKVNGVPLRRVNQAYVIAT+TKVDLS V V +  DDAYFK+ KT K +   + FF
Sbjct:   63 LNKASRWYPAEDVAQP-KQSRKTAKPTKLRTSITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTKVDLSNVKVDEKFDDAYFKKEKTAKASKTEEEFF 183
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: UPI00053C6628 (60S ribosomal protein L6-1-like n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6628)

HSP 1 Score: 152 bits (385), Expect = 4.130e-44
Identity = 81/119 (68.07%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:    7 KTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYFKRVKTEKKNDEGDGFF 363
            KTP++Y  EDVK+P   NKRKP P KLRASITPGTVLI+L+GRF+GKRV+FLKQL+SG LLVTGP+K+NGVPLRRVNQ+YVI T+TKVD+S + V   DD YF +V  EKK  +G+G F
Sbjct:   59 KTPKFYPAEDVKKPLV-NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGINVEKFDDKYFAKV-AEKKKKKGEGEF 175
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: A0A7J9BD88_GOSGO (60S ribosomal protein L6 n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9BD88_GOSGO)

HSP 1 Score: 150 bits (380), Expect = 5.350e-44
Identity = 84/121 (69.42%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    7 KTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYF-KRVKTEKKNDEGDGFFA 366
            K P++Y  EDVK+P   NKRKP P KLRASITPGTVLILL+GRF GKRV+FLKQL SG LLVTGP+K+NGVPLRRVNQ+YVIAT+TKVD+S V+V   DD YF K V  +KK  EG+ F A
Sbjct:    8 KPPKFYPAEDVKKP-LLNKRKPKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGVSVEKFDDKYFAKEVDKKKKKSEGEFFEA 127
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: A0A7N2LCT9_QUELO (60S ribosomal protein L6 n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2LCT9_QUELO)

HSP 1 Score: 152 bits (384), Expect = 6.020e-44
Identity = 84/122 (68.85%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    4 AKTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYF-KRVKTEKKNDEGDGFFA 366
            AK P++Y  +DVK+P   NKRKP P KLRASITPGTVLI+LSGRF GKRV+FLKQL+SG LLVTGP+K+NGVPLRRVNQ+YVIAT+TKVD+S V V   DD YF K V+ +KK  EG+ F A
Sbjct:   59 AKAPKFYPADDVKKPLV-NKRKPKPTKLRASITPGTVLIILSGRFMGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGVNVEKFDDKYFAKEVQKKKKKGEGEFFEA 179
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: A0A835YT51_9STRA (60S ribosomal protein L6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT51_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.030e-44
Identity = 83/123 (67.48%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:   16 RWYATEDVKQPPKRNKRKP--NPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYFKRVKTEKKNDEGDGFFATPAK 378
            RWY  +D+K P K   ++    P KLR+SITPGTV +LLSGRFRGKRV+FLKQ+ASG LLVTGPYKVNGVPLRRVNQAYVIAT+TK+D+SKV V  IDDAYF R    KK  E D FFA  +K
Sbjct:   14 RWYPADDIKAPRKSKAKRSVHKPTKLRSSITPGTVCVLLSGRFRGKRVVFLKQMASGTLLVTGPYKVNGVPLRRVNQAYVIATSTKLDVSKVDVSAIDDAYFARAPEAKKTAE-DAFFAQASK 135
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: A0A2P2LJA9_RHIMU (60S ribosomal protein L6 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LJA9_RHIMU)

HSP 1 Score: 152 bits (384), Expect = 6.370e-44
Identity = 83/121 (68.60%), Postives = 100/121 (82.64%), Query Frame = 1 
Query:    7 KTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYF-KRVKTEKKNDEGDGFFA 366
            K P++Y  EDVK+P   NKRKP P KLRASITPGTVLI+L+GRF+GKRV+FLKQL+SG LLVTGP+K+NGVPLRRVNQAYVIAT+TKVD+S V V   DD YF K+V+ +KK  +G+ F A
Sbjct:   62 KPPKFYPAEDVKKPLP-NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIATSTKVDISGVNVDKFDDKYFAKQVEKKKKKGQGEFFEA 181
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BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Match: A0A0D2NRP6_GOSRA (60S ribosomal protein L6 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2NRP6_GOSRA)

HSP 1 Score: 150 bits (379), Expect = 8.300e-44
Identity = 84/121 (69.42%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    7 KTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKRVIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDIDDAYF-KRVKTEKKNDEGDGFFA 366
            K P++Y  EDVK+P   NKRKP P KLRASITPGTVLILL+GRF GKRV+FLKQL SG LLVTGP+K+NGVPLRRVNQ+YVIAT+TKVD+S V V   DD YF K V+  KK  EG+ F A
Sbjct:   60 KPPKFYPAEDVKKP-LLNKRKPKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGVIVDKFDDKYFAKEVEKRKKKTEGEFFEA 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20661.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G468_ECTSI2.170e-4566.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
RL6_MESCR5.420e-4569.4260S ribosomal protein L6 n=2 Tax=Caryophyllales Ta... [more]
A0A6I9U9H1_SESIN2.680e-4469.4260S ribosomal protein L6 n=2 Tax=Lamiales TaxID=41... [more]
A0A1Y1Y1J0_9FUNG3.450e-4468.8560S ribosomal protein L6 n=1 Tax=Basidiobolus meri... [more]
UPI00053C66284.130e-4468.0760S ribosomal protein L6-1-like n=2 Tax=Tarenaya h... [more]
A0A7J9BD88_GOSGO5.350e-4469.4260S ribosomal protein L6 n=2 Tax=Gossypium TaxID=3... [more]
A0A7N2LCT9_QUELO6.020e-4468.8560S ribosomal protein L6 n=3 Tax=Fagaceae TaxID=35... [more]
A0A835YT51_9STRA6.030e-4467.4860S ribosomal protein L6 n=1 Tax=Tribonema minus T... [more]
A0A2P2LJA9_RHIMU6.370e-4468.6060S ribosomal protein L6 n=2 Tax=Rhizophora mucron... [more]
A0A0D2NRP6_GOSRA8.300e-4469.4260S ribosomal protein L6 n=1 Tax=Gossypium raimond... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20661contigP-wetherbeei_contig20661:212..1155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G468
Preferred nameRPL6
PFAMsRibosomal_L6e,Ribosomal_L6e_N
Model size378
Max annot lvl2759|Eukaryota
KEGG koko:K02934
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue3.56e-46
EggNOG OGsCOG2163@1|root,KOG1694@2759|Eukaryota
Ec32 ortholog description60S ribosomal protein L6E
Ec32 orthologEc-02_001470.1
Descriptionribosomal large subunit assembly
Cds size378
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.856819-CDS-P-wetherbeei_contig20661:211..4071683186205.856819-CDS-P-wetherbeei_contig20661:211..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20661 212..407 +
1683186205.8692064-CDS-P-wetherbeei_contig20661:973..11551683186205.8692064-CDS-P-wetherbeei_contig20661:973..1155Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20661 974..1155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20661.1.1prot_P-wetherbeei_contig20661.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20661 212..1155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20661.1.1

>prot_P-wetherbeei_contig20661.1.1 ID=prot_P-wetherbeei_contig20661.1.1|Name=mRNA_P-wetherbeei_contig20661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MAKTPRWYATEDVKQPPKRNKRKPNPPKLRASITPGTVLILLSGRFRGKR
VIFLKQLASGCLLVTGPYKVNGVPLRRVNQAYVIATTTKVDLSKVTVPDI
DDAYFKRVKTEKKNDEGDGFFATPAK
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mRNA from alignment at P-wetherbeei_contig20661:212..1155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20661.1.1 ID=mRNA_P-wetherbeei_contig20661.1.1|Name=mRNA_P-wetherbeei_contig20661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=944bp|location=Sequence derived from alignment at P-wetherbeei_contig20661:212..1155+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAGACTCCCCGGTGGTACGCGACGGAGGACGTAAAGCAGCCTCC
GAAGCGTAACAAGCGGAAGCCCAACCCACCAAAGCTCCGAGCGAGCATTA
CGCCCGGGACGGTGCTGATCCTACTCTCTGGACGATTCCGTGGAAAGCGT
GTCATCTTCCTCAAGCAGCTGGCGTCCGGCTGCTTGCTGGTCACGGGTGA
GTCGCGCCGTCTTTTGCGGCTGCGCTCGATTTTCCTCGCAGGCGAAGGCA
TTTTCGCCGCTCCCGCGTCCAAAAATTGGATGATGCTGCCCGATGACTTC
AAAGACTGCGCTAGGCGCCGCTGGCGCGACGGCCGGACCGGCGGGAGGAA
CCCAAAAGCCTGGGTGTGGGCAATCGCTGGCACAACTTGGGATGCAAAGA
GAGCCCACTGCCTGGGCGAGGGCGACCGCAAGGGGGGCCGGAGCGACAGC
TTTGTTTGGCGCCGAGGAATGCTAATAGATTATGAGACCTGAGGGCAGCA
GGAGTCGCGGGCGCTGAAACCTTTTCTTCCCGAGTAGGGGCAGTTGGACT
ACCATTGGCTGTAAAGGGATTCGTGCATTTTTCAGGCTATGCCTGCTCAC
GGCGCCTCCTGTAAAGGGGGAAAGTGCGGATTAGACGTTTACTAGTCCCG
TACTGTGTGGTCGTTGTATAAAGACGGAAGACCGAGCGCCTGCCGCGCCA
CCTCTACCTCTCAAAATTTGATGCGGTCCTCATAATCCCCTTCTTGACGG
TTTGGTTGGCAGGCCCGTACAAGGTGAACGGTGTGCCGCTGCGGCGGGTG
AACCAGGCGTACGTGATTGCGACGACGACCAAGGTGGACCTGTCGAAGGT
GACGGTCCCCGACATCGACGACGCCTACTTCAAGCGCGTCAAGACGGAGA
AGAAGAACGACGAGGGCGACGGATTCTTCGCCACACCCGCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20661:212..1155+

>mRNA_P-wetherbeei_contig20661.1.1 ID=mRNA_P-wetherbeei_contig20661.1.1|Name=mRNA_P-wetherbeei_contig20661.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig20661:212..1155+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAAGACTCCCCGGTGGTACGCGACGGAGGACGTAAAGCAGCCTCC
GAAGCGTAACAAGCGGAAGCCCAACCCACCAAAGCTCCGAGCGAGCATTA
CGCCCGGGACGGTGCTGATCCTACTCTCTGGACGATTCCGTGGAAAGCGT
GTCATCTTCCTCAAGCAGCTGGCGTCCGGCTGCTTGCTGGTCACGGGCCC
GTACAAGGTGAACGGTGTGCCGCTGCGGCGGGTGAACCAGGCGTACGTGA
TTGCGACGACGACCAAGGTGGACCTGTCGAAGGTGACGGTCCCCGACATC
GACGACGCCTACTTCAAGCGCGTCAAGACGGAGAAGAAGAACGACGAGGG
CGACGGATTCTTCGCCACACCCGCCAAG
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