mRNA_P-wetherbeei_contig20562.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20562.1.1
Unique NamemRNA_P-wetherbeei_contig20562.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: UPI0019845A95 (DNA mismatch repair protein MutS n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019845A95)

HSP 1 Score: 121 bits (304), Expect = 2.440e-34
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   16 AANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            + ++P+MQQYL +KAEHP+ L+ YRMGDFYELFFDDA+RAAKLLD+TLTARGTSDG PIPMAGVP HA D YL
Sbjct:    2 STHTPMMQQYLALKAEHPDKLVLYRMGDFYELFFDDARRAAKLLDITLTARGTSDGAPIPMAGVPFHALDGYL 74
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BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: UPI0019F30BCF (DNA mismatch repair protein MutS n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F30BCF)

HSP 1 Score: 120 bits (302), Expect = 2.770e-33
Identity = 54/74 (72.97%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:   13 KAANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            + A++P+MQQYL IKA+HP++LLFYRMGDFYELF+DDAK+A+K+LD+TLTARG S+G+PIPMAG+P HAAD YL
Sbjct:   13 ETAHTPMMQQYLRIKADHPDTLLFYRMGDFYELFYDDAKKASKILDITLTARGQSNGKPIPMAGIPYHAADNYL 86
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BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: A0A2D7YYD6_9GAMM (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2D7YYD6_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 1.360e-32
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    7 TDKAANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            T+ +A++P+MQQY  IK +HP  LLFYRMGDFYELF+DDAK+AA+LLD+TLTARG S GQPIPMAG+P HAA+ YL
Sbjct:    6 TESSAHTPMMQQYFSIKQQHPEQLLFYRMGDFYELFYDDAKKAARLLDITLTARGQSGGQPIPMAGIPFHAAEGYL 81
[Close]
BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: A0A3D1Y2C5_9GAMM (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Oceanospirillales bacterium TaxID=1914300 RepID=A0A3D1Y2C5_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 6.690e-32
Identity = 53/73 (72.60%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   16 AANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            ++++P+MQQY  IK+E P++LLFYRMGDFYELFFDDAKRAA++LD+TLTARG S GQPIPMAGVP HAA+ Y+
Sbjct:    5 SSHTPMMQQYFKIKSEFPDTLLFYRMGDFYELFFDDAKRAAQILDITLTARGQSGGQPIPMAGVPFHAAENYI 77
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BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: A0A2M8DVU7_9PROT (DNA mismatch repair protein MutS (Fragment) n=3 Tax=unclassified Nitrosomonadales TaxID=1660158 RepID=A0A2M8DVU7_9PROT)

HSP 1 Score: 115 bits (288), Expect = 8.210e-32
Identity = 54/71 (76.06%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   22 NSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            ++P+MQQYLGIKA+HP+ LLFYRMGDFYELF +DA+RAAKLL++TLT RGTS+GQPI MAGVP HAA+ YL
Sbjct:   18 HTPMMQQYLGIKAQHPDLLLFYRMGDFYELFHEDAERAAKLLNITLTQRGTSNGQPIKMAGVPYHAAEQYL 88
[Close]
BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: UPI001A0AABFB (DNA mismatch repair protein MutS n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A0AABFB)

HSP 1 Score: 125 bits (314), Expect = 1.020e-31
Identity = 58/75 (77.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:   10 DKAANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            + A+++P+MQQYL IKAEHPN+LLFYRMGDFYELFFDDAK+AAK+LD+TLTARG S G+PIPMAG+P HAAD YL
Sbjct:   13 EPASHTPMMQQYLRIKAEHPNTLLFYRMGDFYELFFDDAKKAAKILDITLTARGQSAGKPIPMAGIPYHAADNYL 87
[Close]
BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: A0A6L7WV49_9CHLR (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7WV49_9CHLR)

HSP 1 Score: 118 bits (295), Expect = 1.920e-31
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:   10 DKAANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            D  A++P+MQQYL IKA++P++LLFYRMGDFYELF+DDAKRAA LLD+TLTARG S G PIPMAGVP HA D YL
Sbjct:    2 DLTAHTPMMQQYLSIKAQYPDTLLFYRMGDFYELFYDDAKRAAGLLDITLTARGQSAGNPIPMAGVPFHAVDGYL 76
[Close]
BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: A0A3B0WRK6_9ZZZZ (DNA mismatch repair protein MutS n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0WRK6_9ZZZZ)

HSP 1 Score: 124 bits (310), Expect = 3.540e-31
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:   13 KAANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            K  ++P+MQQYL IKA+HP++LLFYRMGDFYELFFDDAK+AAK+LD+TLTARG SDG PIPMAG+P HAAD YL
Sbjct:   12 KIEHTPMMQQYLRIKADHPDTLLFYRMGDFYELFFDDAKKAAKILDITLTARGKSDGNPIPMAGIPYHAADNYL 85
[Close]
BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: A0A536VJW0_9PROT (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536VJW0_9PROT)

HSP 1 Score: 114 bits (285), Expect = 3.640e-31
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   16 AANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            +A++P+MQQYL +KAEHP+ L+FYRMGDFYELF+ DA+RAA LLD+TLTARG S G PIPMAGVP HA D YL
Sbjct:   16 SAHTPMMQQYLRVKAEHPDKLVFYRMGDFYELFYGDAQRAAPLLDITLTARGQSAGSPIPMAGVPYHAVDQYL 88
[Close]
BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Match: A0A7V5XDN2_9GAMM (DNA mismatch repair protein MutS (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V5XDN2_9GAMM)

HSP 1 Score: 117 bits (292), Expect = 3.920e-31
Identity = 54/71 (76.06%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   22 NSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLDLTLTARGTSDGQPIPMAGVPAHAADPYL 234
            ++P+MQQYL IKAE P++LLFYRMGDFYELF+DDA+RAA+L+D+TLTARG S GQPIPMAG+P HAAD YL
Sbjct:   16 HTPMMQQYLRIKAEFPDTLLFYRMGDFYELFYDDARRAAELIDITLTARGKSAGQPIPMAGIPYHAADTYL 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20562.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019845A952.440e-3476.71DNA mismatch repair protein MutS n=1 Tax=Rhizobact... [more]
UPI0019F30BCF2.770e-3372.97DNA mismatch repair protein MutS n=1 Tax=Proteobac... [more]
A0A2D7YYD6_9GAMM1.360e-3271.05DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A3D1Y2C5_9GAMM6.690e-3272.60DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A2M8DVU7_9PROT8.210e-3276.06DNA mismatch repair protein MutS (Fragment) n=3 Ta... [more]
UPI001A0AABFB1.020e-3177.33DNA mismatch repair protein MutS n=1 Tax=Proteobac... [more]
A0A6L7WV49_9CHLR1.920e-3174.67DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A3B0WRK6_9ZZZZ3.540e-3177.03DNA mismatch repair protein MutS n=1 Tax=hydrother... [more]
A0A536VJW0_9PROT3.640e-3172.60DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]
A0A7V5XDN2_9GAMM3.920e-3176.06DNA mismatch repair protein MutS (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20562contigP-wetherbeei_contig20562:45..281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog203122.Sde_1256
Preferred namemutS
PFAMsMutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
Model size237
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K03555
KEGG Pathwayko03430,map03430
GOsGO:0000018,GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008301,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030554,GO:0030983,GO:0031323,GO:0032136,GO:0032300,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043531,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990391
Exons1
Evalue3.75e-31
EggNOG OGsCOG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,1RNW3@1236|Gammaproteobacteria,464F1@72275|Alteromonadaceae
Descriptionthat it carries out the mismatch recognition step. This protein has a weak ATPase activity
Cds size237
COG categoryL
BiGG ReactioniECW_1372.ECW_m2935,iWFL_1372.ECW_m2935
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.9260855-CDS-P-wetherbeei_contig20562:44..2811683186202.9260855-CDS-P-wetherbeei_contig20562:44..281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20562 45..281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20562.1.1prot_P-wetherbeei_contig20562.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20562 45..281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20562.1.1

>prot_P-wetherbeei_contig20562.1.1 ID=prot_P-wetherbeei_contig20562.1.1|Name=mRNA_P-wetherbeei_contig20562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MATDKAANSPVMQQYLGIKAEHPNSLLFYRMGDFYELFFDDAKRAAKLLD
LTLTARGTSDGQPIPMAGVPAHAADPYLX
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mRNA from alignment at P-wetherbeei_contig20562:45..281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20562.1.1 ID=mRNA_P-wetherbeei_contig20562.1.1|Name=mRNA_P-wetherbeei_contig20562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig20562:45..281+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCGATAAAGCCGCAAATTCGCCCGTCATGCAGCAGTATCTCGG
CATCAAGGCCGAGCATCCGAACAGCTTGCTGTTCTATCGCATGGGTGACT
TCTACGAGCTGTTCTTCGACGACGCCAAGCGTGCCGCGAAACTGCTGGAC
TTGACCCTGACCGCGCGCGGCACCAGCGATGGTCAGCCTATTCCTATGGC
AGGGGTGCCGGCCCATGCTGCCGACCCCTACCTCGNN
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20562:45..281+

>mRNA_P-wetherbeei_contig20562.1.1 ID=mRNA_P-wetherbeei_contig20562.1.1|Name=mRNA_P-wetherbeei_contig20562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig20562:45..281+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCGATAAAGCCGCAAATTCGCCCGTCATGCAGCAGTATCTCGG
CATCAAGGCCGAGCATCCGAACAGCTTGCTGTTCTATCGCATGGGTGACT
TCTACGAGCTGTTCTTCGACGACGCCAAGCGTGCCGCGAAACTGCTGGAC
TTGACCCTGACCGCGCGCGGCACCAGCGATGGTCAGCCTATTCCTATGGC
AGGGGTGCCGGCCCATGCTGCCGACCCCTACCTCGNN
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