mRNA_P-wetherbeei_contig20561.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20561.1.1
Unique NamemRNA_P-wetherbeei_contig20561.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A536Z2S5_9PROT (Heme-binding protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z2S5_9PROT)

HSP 1 Score: 135 bits (340), Expect = 1.710e-37
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 1
Query:   40 ALAQSAAGNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRLR 501
            AL   A   G+  +RN+S  M + + +AA   C + GF+VS+T++DR+GL     R + A LHT E S RKAYTA TFR PSADF KR + DP+ A  +  + V+AL GGLP++ G++VVGA+GVSGS G       D+ C +AGI+++AD+L+
Sbjct:   16 ALWSPAHSQGLVTERNISLGMAQTIANAAMDKCKELGFRVSVTVVDRAGLPIVMLRGDGAGLHTPEGSDRKAYTARTFRAPSADFVKRMLNDPTAAGSKEYTRVLALSGGLPVKVGEDVVGAVGVSGSPG------RDDECSKAGIDKVADQLK 163          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A537RBT9_9PROT (Heme-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RBT9_9PROT)

HSP 1 Score: 134 bits (338), Expect = 3.640e-37
Identity = 72/164 (43.90%), Postives = 105/164 (64.02%), Query Frame = 1
Query:   10 AFCSEVLCLQALAQSAAGNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRLR 501
            A  S  L +   A  A    +  ++ LS  M   +   A   C   G+ VS+T++DR GLV+A+ RD+ +  HT+  S+RKA+T++TFR PSAD+AKR + DP+ A  ++  G IALGGG+PI+AG+EV+GAIGVSG+ GG      DE C  AGI+++ D+L+
Sbjct:    6 AIASLALAVVFAAAPAVAQEVVTEKALSLDMAHAIAQGAVEKCRADGYHVSVTVVDRDGLVKAALRDDGSGPHTIVTSRRKAFTSVTFRQPSADWAKRVLTDPAVAGLKDTEGTIALGGGVPIKAGNEVIGAIGVSGAPGG----EKDEACANAGIQKVGDKLK 165          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A1G0KDC4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0KDC4_9GAMM)

HSP 1 Score: 129 bits (323), Expect = 6.170e-35
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   52 SAAGNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRL 498
            SAA   +  QRNLS    +DM   A  AC ++G+ VS+T+LDRSG  R +  D+NA+ HT+E S RKAYTALTFR PS   AKR  A+PS     NL+ VI  GGGLP+ AG E++G+IGVSG+ G  +    D  C +AGI+RI   L
Sbjct:   19 SAAAQSVVTQRNLSFDGARDMALGALEACRKQGYAVSVTVLDRSGRTRVALHDDNANPHTIENSMRKAYTALTFRGPSEQLAKRAAANPSVL---NLANVITGGGGLPVYAGKELIGSIGVSGAPGADL----DAPCAQAGIDRIVKGL 160          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A1F9CCR2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_49_23 TaxID=1797840 RepID=A0A1F9CCR2_9DELT)

HSP 1 Score: 127 bits (319), Expect = 2.950e-34
Identity = 66/141 (46.81%), Postives = 96/141 (68.09%), Query Frame = 1
Query:   79 QRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRLR 501
            QR LS  + ++   AA   C   GF+VS+ ++DRSG ++A  RD++A  HTL+ S+RKA+TAL+FR  + +  +    +PS A   N+S V+ LGGG+PIRAG EV+GAIGV G+ GG      D++C +AGI+RIA+RL+
Sbjct:   32 QRQLSLSLAEEAATAAIERCRADGFRVSVAVVDRSGSLKALLRDDDAGPHTLDSSRRKAFTALSFRTGTTELVQLLATNPSAAGLVNISNVLILGGGIPIRAGQEVIGAIGVGGAPGG----DRDDICAQAGIDRIANRLK 168          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A1H1KQJ2_9HYPH (Uncharacterized conserved protein GlcG, DUF336 family n=2 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A1H1KQJ2_9HYPH)

HSP 1 Score: 125 bits (315), Expect = 1.030e-33
Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 1
Query:   40 ALAQSAAGNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRLR 501
            AL+ SA   G+ ++ N+S  M   + +AA   C + GF+VS+ ++DR+GL     R + A LHT E + RKAYTA TFR  SADF KR   DP+       + V+AL GGLPIR GD+VVGA+GVSGS G       D+ C +AGI+ +A +L+
Sbjct:   16 ALSSSAHAQGLVSENNISLAMALTIANAAMEKCKEMGFKVSVAVVDRAGLPIVVLRGDGAGLHTPEGADRKAYTARTFRAASADFVKRMQNDPTAVGSMEYTRVLALPGGLPIRVGDDVVGAVGVSGSPG------KDDDCSQAGIDTVAAQLK 163          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A399EPZ3_9DEIN (Heme-degrading n=2 Tax=Calidithermus TaxID=2747271 RepID=A0A399EPZ3_9DEIN)

HSP 1 Score: 125 bits (314), Expect = 1.290e-33
Identity = 67/149 (44.97%), Postives = 97/149 (65.10%), Query Frame = 1
Query:   55 AAGNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRLR 501
            A   G+  +RNLS  + ++   AA   C   G++VS+ +LDR G  +A  R++ A LHT + + +KAYT+ + R+P++ FA+R    P  A   ++SGVIALGGGLP+  G+EV+GAIGV    GGA  G  DE C +AG+++IADRLR
Sbjct:   18 ALAQGVLTERNLSVALAEEAALAAMQKCQADGYRVSVVVLDRGGAFKAGLRNDGAGLHTFDTAWKKAYTSASVRVPTSTFAQRVQTAPGLA---SISGVIALGGGLPVSVGNEVIGAIGV----GGAPSGEADEACAKAGLDKIADRLR 159          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A1Z4JGN2_LEPBY (Uncharacterized protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A1Z4JGN2_LEPBY)

HSP 1 Score: 125 bits (314), Expect = 1.490e-33
Identity = 66/146 (45.21%), Postives = 95/146 (65.07%), Query Frame = 1
Query:   61 GNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRL 498
            G  +  ++ +S  +  +   +A   C ++GF+VS  +LDR G  + +  D++A LHTL+ ++RKAYTALTFR+PSA+FAKR    P+ A   +  GVIAL GGLPIR+G+EV+G+IG+    GGA  G  DE C + GI +I  RL
Sbjct:   26 GQSVRNEKQISLELASEAAMSAIAQCREQGFRVSAVVLDRGGNTKIAMTDDSAGLHTLDSARRKAYTALTFRVPSAEFAKRVATTPALA---SFEGVIALAGGLPIRSGNEVIGSIGI----GGAPAGERDEGCAQTGIRKIQSRL 164          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A1H4QRI8_9HYPH (Uncharacterized conserved protein GlcG, DUF336 family n=1 Tax=Beijerinckia sp. 28-YEA-48 TaxID=1882748 RepID=A0A1H4QRI8_9HYPH)

HSP 1 Score: 125 bits (314), Expect = 1.630e-33
Identity = 71/157 (45.22%), Postives = 96/157 (61.15%), Query Frame = 1
Query:   28 LCLQALAQSAAGNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRL 498
            LC  ++   A  + + +QRNLS          A   C + GF+V++T+LDRSG  R    D+N S HTLE S RKAYTALTFR+PS D  KR  A+P+      L  V +  G LPI+AG+++VG+IGVSG+ GG      DE+C +AGI++IA  L
Sbjct:   14 LCALSVGAQAQTSTLISQRNLSFDAALQAATTALETCRKNGFRVTVTVLDRSGRTRVVLHDDNVSPHTLENSLRKAYTALTFRIPSGDMGKRIAANPTATSPLLLDKVTSAQGALPIKAGNDIVGSIGVSGAPGG----DKDEVCSQAGIDKIAAGL 166          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: A0A1W6MS80_9HYPH (Uncharacterized protein n=1 Tax=Methylocystis bryophila TaxID=655015 RepID=A0A1W6MS80_9HYPH)

HSP 1 Score: 124 bits (311), Expect = 4.360e-33
Identity = 71/153 (46.41%), Postives = 102/153 (66.67%), Query Frame = 1
Query:   43 LAQSAAGNGMAAQRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRLR 501
            LA SA    ++ Q+ LS+     +   A+  C  +G++VS+T++   G + A+ R + AS HTLE SQRKAYTA TFR+PS +FA+R   +P+   Q NLSGVIA+ GGLPI+ GD V+GA+GVSG+ GG      DE C +A +++IAD+L+
Sbjct:   19 LASSATAE-LSTQKVLSTPTALAIAQTAYETCTGQGYKVSVTVVGLEGQILAALRGDGASPHTLENSQRKAYTARTFRIPSGEFAQRVKDNPTSG-QVNLSGVIAIQGGLPIKLGDAVIGAVGVSGAPGG----EKDEACAKAALDKIADQLK 165          
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Match: UPI001837174D (Heme-binding protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI001837174D)

HSP 1 Score: 123 bits (309), Expect = 1.040e-32
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 1
Query:   79 QRNLSSVMVKDMLDAAWGACHQKGFQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAKRTVADPSRAP----QQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSNDEMCGEAGIERIADRLR 501
            +++LS      M   A   C Q+G++V++T+L R G  R   R + AS HT+E S+RKAYTA T RM SADFAKR +ADP+ AP    Q  L G IAL G LP++ G+EV+GAIGVSG+ GG      DE+C  AG+++IA  L+
Sbjct:   32 EKSLSLAQALTMAQTAAETCKQQGYRVTVTVLGREGETRVVLRGDGASPHTVENSRRKAYTARTVRMSSADFAKR-LADPATAPTATAQATLPGFIALAGALPVKVGEEVIGAIGVSGAPGG----ERDEVCARAGLDKIAAELK 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20561.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A536Z2S5_9PROT1.710e-3746.75Heme-binding protein n=2 Tax=Betaproteobacteria ba... [more]
A0A537RBT9_9PROT3.640e-3743.90Heme-binding protein n=1 Tax=Alphaproteobacteria b... [more]
A0A1G0KDC4_9GAMM6.170e-3550.34Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1F9CCR2_9DELT2.950e-3446.81Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1H1KQJ2_9HYPH1.030e-3345.45Uncharacterized conserved protein GlcG, DUF336 fam... [more]
A0A399EPZ3_9DEIN1.290e-3344.97Heme-degrading n=2 Tax=Calidithermus TaxID=2747271... [more]
A0A1Z4JGN2_LEPBY1.490e-3345.21Uncharacterized protein n=2 Tax=Pseudanabaenales T... [more]
A0A1H4QRI8_9HYPH1.630e-3345.22Uncharacterized conserved protein GlcG, DUF336 fam... [more]
A0A1W6MS80_9HYPH4.360e-3346.41Uncharacterized protein n=1 Tax=Methylocystis bryo... [more]
UPI001837174D1.040e-3248.28Heme-binding protein n=1 Tax=Rhodoplanes sp. TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20561contigP-wetherbeei_contig20561:101..604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog926560.KE387023_gene3312
PFAMsHaem_degrading
Model size504
Max annot lvl1297|Deinococcus-Thermus
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-34
EggNOG OGsCOG3193@1|root,COG3193@2|Bacteria,1WMZU@1297|Deinococcus-Thermus
DescriptionHaem-degrading
Cds size504
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.8611405-CDS-P-wetherbeei_contig20561:100..6041683186202.8611405-CDS-P-wetherbeei_contig20561:100..604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20561 101..604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20561.1.1prot_P-wetherbeei_contig20561.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20561 101..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20561.1.1

>prot_P-wetherbeei_contig20561.1.1 ID=prot_P-wetherbeei_contig20561.1.1|Name=mRNA_P-wetherbeei_contig20561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MACAFCSEVLCLQALAQSAAGNGMAAQRNLSSVMVKDMLDAAWGACHQKG
FQVSITILDRSGLVRASFRDENASLHTLELSQRKAYTALTFRMPSADFAK
RTVADPSRAPQQNLSGVIALGGGLPIRAGDEVVGAIGVSGSQGGAVVGSN
DEMCGEAGIERIADRLR*
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mRNA from alignment at P-wetherbeei_contig20561:101..604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20561.1.1 ID=mRNA_P-wetherbeei_contig20561.1.1|Name=mRNA_P-wetherbeei_contig20561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig20561:101..604+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATGCGCCTTCTGCTCGGAGGTATTGTGTTTGCAGGCGCTAGCGCA AAGCGCGGCGGGAAATGGCATGGCCGCGCAGCGCAATTTGTCCTCCGTGA TGGTCAAGGACATGCTCGATGCCGCGTGGGGCGCGTGCCATCAGAAGGGC TTTCAGGTTTCGATCACTATTCTCGACCGGTCGGGCCTGGTGCGTGCGTC GTTTCGCGACGAGAACGCCAGCCTGCACACGCTGGAGCTCAGCCAGCGCA AAGCTTACACCGCGCTGACCTTCCGCATGCCGTCCGCCGACTTCGCCAAG CGGACGGTCGCTGATCCAAGCCGGGCGCCGCAGCAGAATCTTTCGGGCGT GATCGCGCTTGGCGGCGGTCTGCCGATCAGGGCGGGCGACGAGGTGGTGG GCGCTATTGGCGTGTCCGGCTCGCAGGGCGGCGCCGTGGTCGGCTCCAAT GACGAGATGTGCGGCGAGGCGGGGATCGAGCGGATCGCCGACCGGCTCAG GTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20561:101..604+

>mRNA_P-wetherbeei_contig20561.1.1 ID=mRNA_P-wetherbeei_contig20561.1.1|Name=mRNA_P-wetherbeei_contig20561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig20561:101..604+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATGCGCCTTCTGCTCGGAGGTATTGTGTTTGCAGGCGCTAGCGCA
AAGCGCGGCGGGAAATGGCATGGCCGCGCAGCGCAATTTGTCCTCCGTGA
TGGTCAAGGACATGCTCGATGCCGCGTGGGGCGCGTGCCATCAGAAGGGC
TTTCAGGTTTCGATCACTATTCTCGACCGGTCGGGCCTGGTGCGTGCGTC
GTTTCGCGACGAGAACGCCAGCCTGCACACGCTGGAGCTCAGCCAGCGCA
AAGCTTACACCGCGCTGACCTTCCGCATGCCGTCCGCCGACTTCGCCAAG
CGGACGGTCGCTGATCCAAGCCGGGCGCCGCAGCAGAATCTTTCGGGCGT
GATCGCGCTTGGCGGCGGTCTGCCGATCAGGGCGGGCGACGAGGTGGTGG
GCGCTATTGGCGTGTCCGGCTCGCAGGGCGGCGCCGTGGTCGGCTCCAAT
GACGAGATGTGCGGCGAGGCGGGGATCGAGCGGATCGCCGACCGGCTCAG
GTAG
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