mRNA_P-wetherbeei_contig2055.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2055.3.2
Unique NamemRNA_P-wetherbeei_contig2055.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2055.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2055contigP-wetherbeei_contig2055:2820..3412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size415
Hectar predicted targeting categorysignal peptide
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.366399-CDS-P-wetherbeei_contig2055:2819..28691683186202.366399-CDS-P-wetherbeei_contig2055:2819..2869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2055 2820..2869 -
1683186202.382821-CDS-P-wetherbeei_contig2055:3048..33671683186202.382821-CDS-P-wetherbeei_contig2055:3048..3367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2055 3049..3367 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.3920634-UTR-P-wetherbeei_contig2055:3367..34121683186202.3920634-UTR-P-wetherbeei_contig2055:3367..3412Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2055 3368..3412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2055.3.2prot_P-wetherbeei_contig2055.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2055 2820..3367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2055.3.2

>prot_P-wetherbeei_contig2055.3.2 ID=prot_P-wetherbeei_contig2055.3.2|Name=mRNA_P-wetherbeei_contig2055.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MGRGWKGRQALDFVMLLVFVRLAVGFGAWRERKGANVVEFAHRWMRRFIS
TIFRAVLPGPAGANWRQLMAGCGLLTLHSLLFAFPASPLLCIAADRLGSS
LPLQPLCHGVDWASAVQQRLHLQ
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mRNA from alignment at P-wetherbeei_contig2055:2820..3412-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2055.3.2 ID=mRNA_P-wetherbeei_contig2055.3.2|Name=mRNA_P-wetherbeei_contig2055.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=593bp|location=Sequence derived from alignment at P-wetherbeei_contig2055:2820..3412- (Phaeothamnion wetherbeei SAG_119_79)
GGCCCAACCTCGCCATAATGGTGCGGAGGAAAGGGAAGGAAGAGGATGGG
AAGGGGATGGAAGGGGAGGCAGGCGCTTGATTTCGTTATGTTGTTGGTCT
TTGTTCGTTTGGCAGTTGGTTTTGGGGCTTGGAGGGAGCGGAAGGGAGCA
AATGTGGTAGAGTTTGCGCATAGGTGGATGCGGCGCTTCATTTCTACCAT
CTTCCGCGCTGTCCTGCCTGGCCCTGCTGGGGCAAACTGGCGGCAGTTGA
TGGCCGGCTGCGGCCTGCTGACACTCCACTCGCTCCTGTTTGCCTTTCCC
GCTTCTCCTCTTCTCTGCATCGCCGCAGATCGCCTGGGTTCTTCTCTTCC
GCTTCAACCACTATGTAAGTCTACCTCTCTGGTCGGTTCCCTTTCCTGTG
TTCAACCGAGTCCGTTCTATTGCAACTTCTCTCGTTCGAATTAGCTGTTC
GCCCCTCAAATCTTCTTTAAAGACCGCTAAGCAAATCGCATGGAATACCT
CATGACTTACATTTATCTCTCCCTCTCTTTCGTTCCACGGCAGGCCATGG
TGTGGATTGGGCTTCGGCCGTACAACAGCGCCTCCATCTCCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2055:2820..3412-

>mRNA_P-wetherbeei_contig2055.3.2 ID=mRNA_P-wetherbeei_contig2055.3.2|Name=mRNA_P-wetherbeei_contig2055.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig2055:2820..3412- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAAGGGGATGGAAGGGGAGGCAGGCGCTTGATTTCGTTATGTTGTT
GGTCTTTGTTCGTTTGGCAGTTGGTTTTGGGGCTTGGAGGGAGCGGAAGG
GAGCAAATGTGGTAGAGTTTGCGCATAGGTGGATGCGGCGCTTCATTTCT
ACCATCTTCCGCGCTGTCCTGCCTGGCCCTGCTGGGGCAAACTGGCGGCA
GTTGATGGCCGGCTGCGGCCTGCTGACACTCCACTCGCTCCTGTTTGCCT
TTCCCGCTTCTCCTCTTCTCTGCATCGCCGCAGATCGCCTGGGTTCTTCT
CTTCCGCTTCAACCACTATGCCATGGTGTGGATTGGGCTTCGGCCGTACA
ACAGCGCCTCCATCTCCAA
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