mRNA_P-wetherbeei_contig2054.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2054.1.1
Unique NamemRNA_P-wetherbeei_contig2054.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A6H5JWL4_9PHAE (ACB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWL4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 2.700e-35
Identity = 77/190 (40.53%), Postives = 106/190 (55.79%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAYI--TTEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARVEALAAAGMAVNGRDPEGRAPLHFACDR 564
            + LF  A   M T KG  LS++QRL +Y+ +KQAT GDC   +P ++D+VGRAKW AW R+ G+  +EA  +Y+   TE+ PDWL   Q  PP G+AG  ++                            VSTMA   G  T++W + E +F AAS GD  R+  L ++G+ V+ +D EGR PLHFA DR
Sbjct:   15 ERLFGMAANHMITVKGVALSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGMEPVEAMKSYLLKVTELCPDWLAEAQGQPP-GNAGMVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMATGQGN-TAEWGANEEIFAAASEGDVVRIRDLVSSGVKVDAQDEEGRTPLHFAADR 202          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A2R5GLL6_9STRA (Acyl-CoA-binding domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLL6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.560e-25
Identity = 83/241 (34.44%), Postives = 119/241 (49.38%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAY--ITTEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDC-ARVEALAAAGM-------AVNGRDPEGRAPLHFACDRRHEA-ARALLRLGADVDARDADGQTALAYAVACGHRDVIQVLV 690
            +E F AA+ F ++    K+ NE +L++YA++KQ+ +GDC   +PS+LD VG AKW+AW++V G    EA+ AY  +   + P W +         +AG+ + G  X                        VST A+E+ +        E L   A  G+  A V AL  +G        ++ G D E    LH ACDR   A   AL+ LGADV+ARD DG T L YA+   H D+ + LV
Sbjct:   17 EEEFEAAQKFASSGALGKVDNEDQLQLYAWFKQSVVGDCTTPKPSMLDFVGMAKWNAWRKVAGKSPAEARAAYLGVLDRLAPGWREKEPIAADTANAGAAAGGXXXEGGMAPR-----------------VSTFAMEEEKAHDDQTQAERLLTMAGRGELEALVTALKTSGFGKGDKLSSIVGDDNE--TLLHMACDRDDAAMVDALIELGADVEARDVDGLTPLGYALMNDHADLARHLV 238          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A162ZL55_PHYB8 (ACB domain-containing protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162ZL55_PHYB8)

HSP 1 Score: 99.8 bits (247), Expect = 8.410e-22
Identity = 69/233 (29.61%), Postives = 114/233 (48.93%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAYIT--TEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARV-EALAAAGMAVNGRDPEGRAPLHFACDRRH-EAARALLRLGADVDARDADGQTALAYAVACGHRDVIQVL 687
            D+ F +A ++++T +   +SN+ +L++YA +KQ  +GDC   +P++ + V RAKWDAW+ ++G+P  EAK  Y++    +K  W +  +        G D E                           +VST++ +  E        E LF     GD  +V E +     +VN +D EG  PLH ACDR   + A AL+ LGA+++A+    +T L YA      +  ++L
Sbjct:    7 DDWFESAYIYLSTHEKISISNDNKLKLYALFKQVIIGDCNGPKPNLFEFVARAKWDAWKSIYGMPANEAKEGYVSFVESLKVGWSRAGEYK----YEGVDEE---------------------TRGFGTSVSTLSYDTEEIVE-----EDLFSLTCAGDVEKVRERVTKYNDSVNSKDDEGLTPLHHACDRGFPDMAEALIELGANINAQANTLETPLHYAYISEQLETAKIL 209          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: UPI0005D38E5C (acyl-CoA-binding domain-containing protein 2 isoform X2 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D38E5C)

HSP 1 Score: 101 bits (252), Expect = 1.190e-21
Identity = 75/222 (33.78%), Postives = 103/222 (46.40%), Query Frame = 1
Query:    1 DELFRAAEVFMATC----KGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAYI--TTEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARVEALAAAGMAVNGRDPEGRAPLHFACDRRH-EAARALLRLGADVDARDADGQTALA 645
            DE F AA  F+AT        K+SNE +L +Y  YK AT G C I +PS L I  RAKW+AWQR+  +P  EA   YI   +++ P W     S    G  GS +                              ST A ++  D+      E +   A  G+   +      G  VN RD +GR+ LH+A DR H +    L++  ADV+A+D +GQTA+A
Sbjct:  121 DESFSAATSFVATMATDRSSQKVSNETQLELYGLYKIATEGPCNIPQPSALKISARAKWNAWQRLGTMPPEEAMQRYIMIVSQLYPTWASGGTSRNKEGDDGSSATAKGGTMGP-------------------VFSTFAHDEDSDSEL--KMEGIHVCAREGEMNNLLKYLEQGDLVNSRDSDGRSALHWAVDRGHLDIVELLIKKNADVNAKDNEGQTAIA 321          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A6G0WN88_9STRA (ACB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN88_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.120e-20
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAY--ITTEIKPDWLKTLQSMPPR--GSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARVEALAAAGMA-VNGRDPEGRAPLHFACDR-RHEAARALLRLGAD 606
            D  F  A  ++A    P + NE++L +YAFYKQAT GDC   +PS +D+V +AKWDAW  ++G+P +EAK  Y  + + + P++    +   P    S+ S SEG S                            +  + G+D   W+  E  F  A  G    V+ L A   + +N +D EGR  LH+A DR + E   +LL  GAD
Sbjct:   50 DRHFVHASSYVAANPQPPIGNEEKLVLYAFYKQATTGDCNTTKPSAIDLVAKAKWDAWNGLNGMPSIEAKKRYLEVVSSMFPNYSYGSELPTPLEDSSSHSGSEGDSGGDFTMTPLMS---------------QVVVDKTGKD---WEVVENQFHFAKMGQLTDVQDLLATDTSRINEKDDEGRTMLHWAVDRGQEEMVSSLLSQGAD 239          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A485K8J4_9STRA (Aste57867_2396 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8J4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.520e-18
Identity = 73/211 (34.60%), Postives = 105/211 (49.76%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAYITTEIKPDWLKTL---QSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSK-WDSCEALFEAASFGDCARVEAL-AAAGMAVNGRDPEGRAPLHFACDR-RHEAARALLRLGADVDA 615
            D+ F  A  +++    P  SNE +L +YAF+KQAT GDC    PS +D V +AKWDAW  + G+P +EAK  Y+  E+     +     +++PP  SA + SEG S                            M+ E  + T+K W   E  F  A  G    V+ L A+A  A++ +D EGR  LH+A DR + +   +LL  GADV+A
Sbjct:   54 DKHFAHASAYVSANPKPSPSNEDKLVLYAFFKQATAGDCTAAAPSAVDFVAKAKWDAWHGLVGMPIVEAKKRYL--EVVSSLFRDYSYGRAIPPI-SADAISEGESDGGGGDDVDMGF-------------TPPMSQEIVDKTTKEWQVEENAFHFAKTGQMDAVQTLLASADHAIDTKDDEGRTMLHWAVDRDQADVVASLLAQGADVNA 248          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A251SAH9_HELAN (Acyl-CoA binding protein 1 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SAH9_HELAN)

HSP 1 Score: 93.2 bits (230), Expect = 2.000e-18
Identity = 71/209 (33.97%), Postives = 96/209 (45.93%), Query Frame = 1
Query:    1 DELFRAAEVFMATC----KGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAYIT--TEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARVEALAAAGMAVNGRDPEGRAPLHFACDRRH-EAARALLRLGAD 606
            DE F AA  F+A         K+S++ +L++Y  YK AT G C + +PS L +  RAKW+AWQ++  +P  EA   YI   TE+ P WL    S     +A   S   +                          S+   E+  D  K D+  A    A  GD   +     AG+ V+ +D EGRAPLH+A DR H EAA  LL   AD
Sbjct:  101 DEAFSAATAFVAATVADRSAQKVSSDLQLQLYGLYKIATEGPCSVPQPSALKMTARAKWNAWQKLGAMPPEEAMQKYIEIITELYPTWLAGSTSKKRDENANERSSNENRPMGP-------------------VFSSFIHEEESDELKLDAIHAF---AREGDTENLIKCVEAGIPVDIKDSEGRAPLHWAVDRGHIEAAELLLSRNAD 287          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: W4GDX4_9STRA (ACB domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDX4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.230e-18
Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAY--ITTEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARVEALAAAGMAVNGRDPEGRAPLHFACDR 564
            D+ F  A  ++++   P +SNE++L +YAF+KQAT G+C    PS+LD V +AKWDAWQ + G+P +EAK  Y  + + + P +       PPR    SD+E                            +S + ++  + T +W   E  F  A  G    V+ L A    +N  D EGR  LH+A DR
Sbjct:   60 DKHFAHASGYVSS--KPSISNEEKLVLYAFFKQATAGNCAGDEPSMLDFVAKAKWDAWQALAGMPSVEAKKRYLEVVSSMFPGYAYDAPLPPPRDDV-SDTESD----------------LGGDMSLAPLMSQVVVD--KTTKEWQVEENAFHFAKTGQVEAVQGLVANATDINQTDDEGRTMLHWAVDR 228          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A024TSE4_9STRA (ACB domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSE4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.200e-17
Identity = 65/210 (30.95%), Postives = 100/210 (47.62%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAY--ITTEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARVEALAAAGM--AVNGRDPEGRAPLHFACDRRH-EAARALLRLGADVDA 615
            D+ F  A  ++++     +SNE++L +YAF+KQAT+GDC+  +PS++D V +AKWDAWQ + G+  +EAK  Y  + + I P++    Q      S  SDSE                            + +  + D + T +W   E  F  A  G    ++ + A      +N +D EGR  LH+A DR       ALL   A+V A
Sbjct:   53 DKHFAHASAYVSSNPKQSISNEEKLVLYAFFKQATMGDCIDSKPSIVDFVAKAKWDAWQGLAGMTAIEAKKRYLEVVSSIYPNYSYGAQLPSKCTSEVSDSESDGGGDMSLTP-----------------LMSQVIVD-KTTKEWQVEENAFHFAKTGQLDALQDIVANSSDDVINQKDDEGRTMLHWAVDRNQPNVVAALLAQHANVRA 244          
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Match: A0A2D4BH58_PYTIN (Acyl-CoA-binding domain-containing protein, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH58_PYTIN)

HSP 1 Score: 88.6 bits (218), Expect = 2.590e-17
Identity = 62/190 (32.63%), Postives = 90/190 (47.37%), Query Frame = 1
Query:    1 DELFRAAEVFMATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQRVHGLPELEAKMAYI--TTEIKPDWLKTLQSMPPRGSAGSDSEGSSXXXXXXXXXXXXXXXXXXXXXXXXAVSTMALEDGEDTSKWDSCEALFEAASFGDCARVEALAAAGMAVNGRDPEGRAPLHFACDR 564
            D  F+ A  F+A     KLSNEQRL +YAF+KQA+LG C  ++PS +D+V RAK+++W  +  +P   AK  Y+    E+ P +  T +   PR                                   AVS   ++      +W   E +F  AS GD A+++   A G  V+ +D EGR  LH+A DR
Sbjct:    8 DAQFQVAVDFVAMQSSAKLSNEQRLTLYAFFKQASLGKCTGEKPSAIDMVARAKYESWFSLGEMPAATAKQQYVGLVQELFPHFDVTGERNEPR-----------------QPHPLAERIDTGDVSMAGAVSMPTVDMS--APEWQVQEDVFHFASTGDVAKIKEALARGSDVDAKDEEGRTMLHWAVDR 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2054.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWL4_9PHAE2.700e-3540.53ACB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2R5GLL6_9STRA4.560e-2534.44Acyl-CoA-binding domain-containing protein 1 n=1 T... [more]
A0A162ZL55_PHYB88.410e-2229.61ACB domain-containing protein (Fragment) n=1 Tax=P... [more]
UPI0005D38E5C1.190e-2133.78acyl-CoA-binding domain-containing protein 2 isofo... [more]
A0A6G0WN88_9STRA9.120e-2033.17ACB domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A485K8J4_9STRA1.520e-1834.60Aste57867_2396 protein n=1 Tax=Aphanomyces stellat... [more]
A0A251SAH9_HELAN2.000e-1833.97Acyl-CoA binding protein 1 n=1 Tax=Helianthus annu... [more]
W4GDX4_9STRA4.230e-1832.63ACB domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A024TSE4_9STRA2.200e-1730.95ACB domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A2D4BH58_PYTIN2.590e-1732.63Acyl-CoA-binding domain-containing protein, putati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2054contigP-wetherbeei_contig2054:918..3083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G738
Preferred nameACBD6
PFAMsACBP,Ank_2,Ank_4,Ank_5
Model size774
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Exons7
Evalue3.17e-35
EggNOG OGsCOG4281@1|root,KOG0817@2759|Eukaryota
Ec32 ortholog descriptionmembrane acyl-CoA binding protein
Ec32 orthologEc-01_011160.1
Descriptionfatty-acyl-CoA binding
Cds size744
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2054.1.1prot_P-wetherbeei_contig2054.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2054 918..3053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.188845-CDS-P-wetherbeei_contig2054:917..10101683186202.188845-CDS-P-wetherbeei_contig2054:917..1010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 918..1010 -
1683186202.1976094-CDS-P-wetherbeei_contig2054:1275..13891683186202.1976094-CDS-P-wetherbeei_contig2054:1275..1389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 1276..1389 -
1683186202.205068-CDS-P-wetherbeei_contig2054:1677..18311683186202.205068-CDS-P-wetherbeei_contig2054:1677..1831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 1678..1831 -
1683186202.21257-CDS-P-wetherbeei_contig2054:2053..22471683186202.21257-CDS-P-wetherbeei_contig2054:2053..2247Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 2054..2247 -
1683186202.2200766-CDS-P-wetherbeei_contig2054:2465..25201683186202.2200766-CDS-P-wetherbeei_contig2054:2465..2520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 2466..2520 -
1683186202.22747-CDS-P-wetherbeei_contig2054:2770..28651683186202.22747-CDS-P-wetherbeei_contig2054:2770..2865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 2771..2865 -
1683186202.2348628-CDS-P-wetherbeei_contig2054:3014..30531683186202.2348628-CDS-P-wetherbeei_contig2054:3014..3053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2054 3015..3053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.242642-UTR-P-wetherbeei_contig2054:3053..30831683186202.242642-UTR-P-wetherbeei_contig2054:3053..3083Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2054 3054..3083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2054.1.1

>prot_P-wetherbeei_contig2054.1.1 ID=prot_P-wetherbeei_contig2054.1.1|Name=mRNA_P-wetherbeei_contig2054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MATCKGPKLSNEQRLRVYAFYKQATLGDCLIQRPSVLDIVGRAKWDAWQR
VHGLPELEAKMAYITTEIKPDWLKTLQSMPPRGSAGSDSEGSSSDGHGGD
KGRGRGDGGGAGLSFSVAVSTMALEDGEDTSKWDSCEALFEAASFGDCAR
VEALAAAGMAVNGRDPEGRAPLHFACDRRHEAARALLRLGADVDARDADG
QTALAYAVACGHRDVIQVLVDAGADVSAEDDDGDTPLGTASAEMRAVL
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mRNA from alignment at P-wetherbeei_contig2054:918..3083-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2054.1.1 ID=mRNA_P-wetherbeei_contig2054.1.1|Name=mRNA_P-wetherbeei_contig2054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2166bp|location=Sequence derived from alignment at P-wetherbeei_contig2054:918..3083- (Phaeothamnion wetherbeei SAG_119_79)
GACGAGCTATTCCGCGCGGCGGAGGTTTTCATGGCGACTTGCAAAGGCCC TAAGCTCAGCAACGAACAGGTCGCGAAAGTTTGGATGTTGTTTTGGGGTT GGAAGTCGCAGCGCCTTGCCGTGCACCTCTCGAAATAGTCTGTGACCTTA GCCTTATCTCTTCCCACGCTTTTGCCCCTCGCCTCACCGCGCCATTTTCT TTTCCTACAACGAAGTAGAGGCTGCGAGTGTACGCTTTTTACAAGCAGGC AACTTTAGGCGATTGTTTGATTCAAAGGCCTTCCGTGCTGGACATTGTCG GCCGGGCAAAGTGGTAAGACAAGTGCGTTTTGATTTCACTTTGTATCGTA AATTTAACGAATCTCTTGTAAGTGTCAACTGATTGGTCAAGAGTCCTGGC GCAAATGTAACGTTGGAAAGTGGTGTTTGCCAACGGCGTAGCGGCATCCG AACTCAAGTAGCATTAGCGAAGTCCTAGCGAAGTCCTTTTTCCCTTACCG AGTGTACAGTGCTCTCCTCAGCATCGTCAGCCGTGTGCCTCTCTTGTGTT TGCTGAAAATCAGGGACGCATGGCAAAGAGTGCACGGTTTGCCGGAGCTT GAGGCAAAGATGGCATATGTACAGGCGAGTTGCATTGCAAAAGTGCCCAT ACCAGTTGCTGTTGATGCAGACTACCCAGCTTTCCGGCGCCGCCTTCTCT TGCAAAAGAGCAATAGACATTCTGTCGTTTCCAGCTGTCCAATCGGGAAG CGATGCCATTAGCATTGCTCAGGTAGCCATCGCGGCGGCGCCGGTTTTTT TATGCACTTCTGCTTTTGCTGCGTGAAATGTGACAGATAACCACCGAGAT CAAGCCTGATTGGTTGAAGACGCTGCAAAGCATGCCGCCACGCGGATCGG CGGGATCTGACTCTGAAGGGAGCTCCAGCGACGGCCACGGCGGCGACAAA GGCAGAGGCAGAGGCGACGGCGGCGGGGCAGGATTGTCGTTCAGCGTCGC GGTCAGCACAATGGCGCTTGAGGATGGCGAGTAAGTGCAGTTGCGCCGCC GGTACCGCCCGGCACTTCGCTGGTTGCTTCTGGGTTACTGTTAGCGTTCC GGGCGATTTGGTGGGAGGTCATTATCTCCCTGGCTTGCTATTTAAATGGG TCCTTTCTCCCGCTAGTTTCCCCACATTTTGCTCCTTTCTGACATTTCCT CTTTTCCCTGCTGTCCGGTTCGGCACGTCTGCCCCGGCCCCAATCGGCGC AGGGACACGTCGAAATGGGACTCTTGCGAGGCGCTCTTCGAGGCTGCGAG CTTCGGAGACTGCGCCAGGGTGGAGGCGCTGGCAGCGGCGGGCATGGCCG TCAACGGGCGTGACCCGGAGGGCAGGGCTCCCCTCCATTTTGCGTGCGAC AGGCGAGTCTTTCTGCTTTTCAGGAACCGTATTTATTTCGTTAATATACT GGTCGATTGCGCAGTAAGAGCGGCGAATTCATGTCGAACTTTTCGGAGGA GAACTAGGCCGGAAGATGCGTCAGTCTTGGGAAAAGCGTGCTTCCGCCTC CCCTTCTCTCCATTATATTGAGGTCAGTGTGCCAGGCGGGCCAACTAAAC CTCTGCTGTCTTTTGGACGGCACCTCTGTTTCTTGCAAATCCTTTCCGAC TGACATTTCTCTACCCTTCGTGTCATGCGGCGCGCAGAGGAAAGCATGAG GCGGCTCGGGCCCTACTCCGGCTTGGGGCGGACGTCGATGCTCGGGACGC GGACGGCCAGACGGCGTTGGCCTACGCCGTGGCGTGCGGACACCGCGACG TCATTCAGGTGGGATGGTTTATGTGTTCCTTTTTCTTGCCTCCAAAGTCT CGGCGTTCCGCTGTCGACTGCTGCAAAAAGAGAATATGTTGTGGTGGTAG GTTGCCATCCTCTGGAACCGCTTGGCTCCAGTTGTTAATGCAGCCTCTCT TGCCACGTGTACGACGTTTCGAACCACAGCTTTTGATATGCTTCCCGTCA TCAAAGCTGACGTTGTCTTTCTGTGGCATTTTAACCCTGGCATATGTTCC CGGGATATCACATCTGTCTGCAGGTGCTGGTTGACGCCGGGGCCGACGTG TCGGCGGAGGATGATGATGGCGACACGCCGCTGGGGACTGCGAGCGCCGA GATGCGAGCCGTTCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2054:918..3083-

>mRNA_P-wetherbeei_contig2054.1.1 ID=mRNA_P-wetherbeei_contig2054.1.1|Name=mRNA_P-wetherbeei_contig2054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig2054:918..3083- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACTTGCAAAGGCCCTAAGCTCAGCAACGAACAGAGGCTGCGAGT
GTACGCTTTTTACAAGCAGGCAACTTTAGGCGATTGTTTGATTCAAAGGC
CTTCCGTGCTGGACATTGTCGGCCGGGCAAAGTGGGACGCATGGCAAAGA
GTGCACGGTTTGCCGGAGCTTGAGGCAAAGATGGCATATATAACCACCGA
GATCAAGCCTGATTGGTTGAAGACGCTGCAAAGCATGCCGCCACGCGGAT
CGGCGGGATCTGACTCTGAAGGGAGCTCCAGCGACGGCCACGGCGGCGAC
AAAGGCAGAGGCAGAGGCGACGGCGGCGGGGCAGGATTGTCGTTCAGCGT
CGCGGTCAGCACAATGGCGCTTGAGGATGGCGAGGACACGTCGAAATGGG
ACTCTTGCGAGGCGCTCTTCGAGGCTGCGAGCTTCGGAGACTGCGCCAGG
GTGGAGGCGCTGGCAGCGGCGGGCATGGCCGTCAACGGGCGTGACCCGGA
GGGCAGGGCTCCCCTCCATTTTGCGTGCGACAGGCGACATGAGGCGGCTC
GGGCCCTACTCCGGCTTGGGGCGGACGTCGATGCTCGGGACGCGGACGGC
CAGACGGCGTTGGCCTACGCCGTGGCGTGCGGACACCGCGACGTCATTCA
GGTGCTGGTTGACGCCGGGGCCGACGTGTCGGCGGAGGATGATGATGGCG
ACACGCCGCTGGGGACTGCGAGCGCCGAGATGCGAGCCGTTCTC
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