mRNA_P-wetherbeei_contig20530.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20530.1.1
Unique NamemRNA_P-wetherbeei_contig20530.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: K3WE95_GLOUD (Protein-synthesizing GTPase n=29 Tax=Oomycota TaxID=4762 RepID=K3WE95_GLOUD)

HSP 1 Score: 105 bits (261), Expect = 3.380e-25
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEIAAGE 168
            KVLAVKQDLAK+LLT PVCTQEGEKIA+SRR+DKHWRLIGWG+IR+GSRIEIA  E
Sbjct:  408 KVLAVKQDLAKILLTAPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIAESE 463
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: A0A7S0F643_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F643_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.750e-25
Identity = 45/54 (83.33%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEIAA 162
            +V+AVK DLAKV+LTQPVCT+EGEKIALSRRVDKHWRLIGWG+IRKGS+IE+ A
Sbjct:  142 RVIAVKGDLAKVVLTQPVCTEEGEKIALSRRVDKHWRLIGWGQIRKGSKIEVKA 195
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: D8LMY1_ECTSI (Protein-synthesizing GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.540e-24
Identity = 47/52 (90.38%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEI 156
            KVLAVKQDLAK+LLTQPVCTQEGEKIALSRRVDKHWRLIGWG+IR+G++IEI
Sbjct:  392 KVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEI 443
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: A0A6S9GDD6_HETAK (Protein-synthesizing GTPase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GDD6_HETAK)

HSP 1 Score: 103 bits (256), Expect = 1.850e-24
Identity = 47/53 (88.68%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEIA 159
            KVLAVK+DLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWG+IR+GS++EI+
Sbjct:  422 KVLAVKEDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGSKLEIS 474
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: A0A7S4A8Q2_9STRA (Protein-synthesizing GTPase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8Q2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.450e-24
Identity = 46/54 (85.19%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEIAA 162
            KVLAVK DLAK+LLTQPVCT EGEKIALSRRVDKHWRLIGWG+IR+G+R+E+AA
Sbjct:  405 KVLAVKADLAKILLTQPVCTTEGEKIALSRRVDKHWRLIGWGQIRRGARVEVAA 458
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: A0A485L6X1_9STRA (Protein-synthesizing GTPase n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485L6X1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.410e-24
Identity = 45/53 (84.91%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEIA 159
            K+LAVK DLAK++LTQPVCTQEGEKIALSRR+DKHWRLIGWGEIR+G++IEIA
Sbjct:  416 KILAVKADLAKIVLTQPVCTQEGEKIALSRRIDKHWRLIGWGEIRRGTKIEIA 468
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: A0A2D4C5H9_PYTIN (Protein-synthesizing GTPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5H9_PYTIN)

HSP 1 Score: 100 bits (249), Expect = 2.530e-23
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEI 156
            KVLAVKQDLAK+LLT PVCTQEGEKIA+SRR+DKHWRLIGWGEIR+G R+EI
Sbjct:  407 KVLAVKQDLAKILLTAPVCTQEGEKIAISRRIDKHWRLIGWGEIRRGIRVEI 458
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: F0Y3F3_AURAN (Protein-synthesizing GTPase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3F3_AURAN)

HSP 1 Score: 99.4 bits (246), Expect = 4.470e-23
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEIAA 162
            KVLAVK DLAK+LLTQPVCT EGEKIALSRRVDKHWRLIGWG+IR+G+R++I A
Sbjct:  416 KVLAVKADLAKILLTQPVCTMEGEKIALSRRVDKHWRLIGWGQIRRGARVDINA 469
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BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: A0A835YYS7_9STRA (Protein-synthesizing GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.030e-23
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEIA 159
            KVLAVK DLAK+LLTQPVCT+EGEKIALSRRVDKHWRLIGWG+IR+GS+I +A
Sbjct:  441 KVLAVKGDLAKILLTQPVCTEEGEKIALSRRVDKHWRLIGWGQIRRGSKIAVA 493
[Close]
BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Match: A0A7S0CFG0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFG0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.390e-23
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRIEI 156
            +V AVK +LAKV LTQPVCTQEGEKIALSRRVDKHWRLIGWG+IRKG  IEI
Sbjct:   76 RVKAVKDELAKVALTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRKGVVIEI 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20530.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WE95_GLOUD3.380e-2585.71Protein-synthesizing GTPase n=29 Tax=Oomycota TaxI... [more]
A0A7S0F643_9STRA6.750e-2583.33Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
D8LMY1_ECTSI1.540e-2490.38Protein-synthesizing GTPase n=2 Tax=Ectocarpus Tax... [more]
A0A6S9GDD6_HETAK1.850e-2488.68Protein-synthesizing GTPase n=1 Tax=Heterosigma ak... [more]
A0A7S4A8Q2_9STRA4.450e-2485.19Protein-synthesizing GTPase n=1 Tax=Pelagomonas ca... [more]
A0A485L6X1_9STRA6.410e-2484.91Protein-synthesizing GTPase n=6 Tax=Saprolegniacea... [more]
A0A2D4C5H9_PYTIN2.530e-2386.54Protein-synthesizing GTPase n=1 Tax=Pythium insidi... [more]
F0Y3F3_AURAN4.470e-2383.33Protein-synthesizing GTPase n=1 Tax=Aureococcus an... [more]
A0A835YYS7_9STRA5.030e-2384.91Protein-synthesizing GTPase n=2 Tax=Tribonema minu... [more]
A0A7S0CFG0_9STRA6.390e-2384.62Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20530contigP-wetherbeei_contig20530:2..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog65071.PYU1_T003286
PFAMsGTP_EFTU,GTP_EFTU_D2,eIF2_C
Model size174
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue5.55e-26
EggNOG OGsCOG3276@1|root,KOG0466@2759|Eukaryota,1MGE1@121069|Pythiales
DescriptionEukaryotic translation initiation factor 2 subunit 3. Source PGD
Cds size174
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.0985727-CDS-P-wetherbeei_contig20530:1..491683186202.0985727-CDS-P-wetherbeei_contig20530:1..49Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20530 2..49 +
1683186202.1070359-CDS-P-wetherbeei_contig20530:415..5411683186202.1070359-CDS-P-wetherbeei_contig20530:415..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20530 416..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20530.1.1prot_P-wetherbeei_contig20530.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20530 2..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20530.1.1

>prot_P-wetherbeei_contig20530.1.1 ID=prot_P-wetherbeei_contig20530.1.1|Name=mRNA_P-wetherbeei_contig20530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
KVLAVKQDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGEIRKGSRI
EIAAGET*
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mRNA from alignment at P-wetherbeei_contig20530:2..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20530.1.1 ID=mRNA_P-wetherbeei_contig20530.1.1|Name=mRNA_P-wetherbeei_contig20530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig20530:2..541+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGCTCGCCGTCAAGCAGGACCTCGCCAAGGTCCTCCTCACCCAGGT
CAGATTATACTACAGAGGCAGGCAGGCAGGCAGACAGGCAGACAGACAGA
CGGACGGACAGACGGACGGTAGACAGACACACGGTGGACGGACGGGTGGA
CAGACGGATGGACAACAGACAGACAGACAATAGATCGTATGCCACTCAGT
AAGGCTGGCACAGCTGGAAGGGATGATGAATGAATGAATGCATTGGATGG
CATTCCGACGCTTTTTCGATAGGGCTACGGTTGAATTGCATGCTGCCAGT
CGAATGTGGCCTAATCACCGATCTTCTTTGGCAGCCTTGAACGGACCCGC
TTTTTCCGTTTCTCCTCCTCTGCTTGCTTGCTCTCTTTTTGTCACGCCGC
GTGCTTTACTGCAGCCCGTGTGCACGCAGGAGGGGGAGAAGATTGCGCTG
TCGCGACGCGTCGATAAGCACTGGCGGCTCATCGGGTGGGGCGAGATTAG
GAAGGGCAGCCGGATCGAAATTGCGGCCGGAGAGACGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20530:2..541+

>mRNA_P-wetherbeei_contig20530.1.1 ID=mRNA_P-wetherbeei_contig20530.1.1|Name=mRNA_P-wetherbeei_contig20530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig20530:2..541+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGCTCGCCGTCAAGCAGGACCTCGCCAAGGTCCTCCTCACCCAGCC
CGTGTGCACGCAGGAGGGGGAGAAGATTGCGCTGTCGCGACGCGTCGATA
AGCACTGGCGGCTCATCGGGTGGGGCGAGATTAGGAAGGGCAGCCGGATC
GAAATTGCGGCCGGAGAGACGTAA
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