mRNA_P-wetherbeei_contig2051.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2051.1.1
Unique NamemRNA_P-wetherbeei_contig2051.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2051.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2051contigP-wetherbeei_contig2051:3254..4650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1397
Hectar predicted targeting categorysignal peptide
Exons1
Cds size777
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.6168718-UTR-P-wetherbeei_contig2051:3253..35631683186201.6168718-UTR-P-wetherbeei_contig2051:3253..3563Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2051 3254..3563 -
1683186201.6322055-UTR-P-wetherbeei_contig2051:4340..46501683186201.6322055-UTR-P-wetherbeei_contig2051:4340..4650Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2051 4341..4650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.62491-CDS-P-wetherbeei_contig2051:3563..43401683186201.62491-CDS-P-wetherbeei_contig2051:3563..4340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2051 3564..4340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2051.1.1prot_P-wetherbeei_contig2051.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2051 3564..4340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2051.1.1

>prot_P-wetherbeei_contig2051.1.1 ID=prot_P-wetherbeei_contig2051.1.1|Name=mRNA_P-wetherbeei_contig2051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MVAFPQRIAERKAMPRIATALFAWWLLGAVVGTVVGPFDSADFLNGYVAA
WVALFAAGSFAHSATVWAPYVLDIAAHAVRLPASRRAAAASRQTVRHPAA
PHGMAPVPNGHAGKPPFKLPSPPRRPSRTELGRLQSAHSGFGEESSEDEL
DASCSWASEVRPQGDPGASHEARLSAAASHRAYGGGVRAAAAAAVAIDPQ
PRRRPASPRGSASVAGGSVSGSVAGSVSRNGGGLNGGRGGGDSVDNTGQE
VARADDSD*
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mRNA from alignment at P-wetherbeei_contig2051:3254..4650-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2051.1.1 ID=mRNA_P-wetherbeei_contig2051.1.1|Name=mRNA_P-wetherbeei_contig2051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1397bp|location=Sequence derived from alignment at P-wetherbeei_contig2051:3254..4650- (Phaeothamnion wetherbeei SAG_119_79)
GTTGCCTCCCTGCTCTATCTCGCTGAGGCGATCGCCGTGGCTGCAGAGGA
AGGCGGCCGGGCTTTGCTACGTTCTCCCTCTTTTTTGGTGGGCTTTATCG
ACCTTTGTTTTTCATAAATCCCATGCATCATGAAACTTCGCTCTTTGCCG
GAATAAATGAGGGCAATTTACATGTTGTGGTGTACTCTGCACCAATTACT
AATCATCAGTCGCTGATAAGGCCGAGAAACCCTAACTGTAACTCATTCCA
TCGGCGCAGGCGACGTACGCCATCATAGTGAGCGTCGTTTCGCTGGTGGT
TTGCATCTCCATGGTGGCGTTTCCGCAGCGGATTGCGGAGCGAAAAGCCA
TGCCCCGCATTGCCACCGCACTCTTCGCCTGGTGGCTACTGGGCGCCGTT
GTCGGCACGGTTGTGGGGCCGTTCGACTCAGCAGACTTTCTGAACGGTTA
CGTCGCTGCCTGGGTCGCCCTCTTTGCGGCGGGCAGCTTCGCCCATTCCG
CGACGGTCTGGGCTCCGTACGTCCTTGACATTGCCGCCCACGCCGTGCGC
CTTCCCGCCAGCAGGCGGGCCGCTGCTGCCAGCCGGCAGACCGTGCGCCA
CCCTGCAGCCCCGCACGGCATGGCTCCTGTCCCCAATGGGCACGCCGGCA
AGCCCCCGTTCAAGCTGCCATCACCGCCGCGCCGTCCGTCCCGCACCGAG
CTCGGCCGGCTGCAGTCCGCACACTCGGGCTTCGGCGAGGAGTCGTCCGA
GGACGAGCTGGACGCGTCCTGCTCATGGGCGAGCGAGGTCCGGCCGCAGG
GCGACCCCGGCGCATCGCACGAAGCACGTTTGTCGGCGGCGGCGTCGCAC
CGCGCGTATGGCGGGGGCGTCCGGGCCGCCGCCGCCGCCGCCGTGGCAAT
CGACCCGCAGCCGCGGCGGCGGCCGGCATCGCCGCGGGGCTCGGCGAGCG
TCGCTGGTGGCAGCGTCTCCGGCAGCGTCGCCGGCAGCGTCAGCAGGAAT
GGTGGCGGCTTGAATGGTGGCCGCGGCGGCGGCGACAGCGTCGACAACAC
TGGCCAGGAGGTGGCTCGGGCAGACGACAGCGATTAACACGAACTGTGCT
GCCGCAGCAGGCAGTACGTCGCGCCTCTCGCGTTCCGTTGGGTCACTGTC
GCGGCGCCGCGCCGTTTTGTTCTTGGTGAGGTTTTTGCTTCAACTCTGCC
GGTCTTTTGGATGGCAAAACTACTGGTGCAAAGATTATAGAAGCAGGGCA
CCGGCCGAGATGGAGGAAGAATCCATTAATATTTTCAGACAAACGAGAGT
TCATATGGCTAGAAGCTGTCAAAGCGGTCCAAGCACGCAAAGCAATGTGT
TTTATGTTCCGCCAATCAGAAAACCTAATATACTGCAGCCCTAGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2051:3254..4650-

>mRNA_P-wetherbeei_contig2051.1.1 ID=mRNA_P-wetherbeei_contig2051.1.1|Name=mRNA_P-wetherbeei_contig2051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig2051:3254..4650- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGTTTCCGCAGCGGATTGCGGAGCGAAAAGCCATGCCCCGCAT
TGCCACCGCACTCTTCGCCTGGTGGCTACTGGGCGCCGTTGTCGGCACGG
TTGTGGGGCCGTTCGACTCAGCAGACTTTCTGAACGGTTACGTCGCTGCC
TGGGTCGCCCTCTTTGCGGCGGGCAGCTTCGCCCATTCCGCGACGGTCTG
GGCTCCGTACGTCCTTGACATTGCCGCCCACGCCGTGCGCCTTCCCGCCA
GCAGGCGGGCCGCTGCTGCCAGCCGGCAGACCGTGCGCCACCCTGCAGCC
CCGCACGGCATGGCTCCTGTCCCCAATGGGCACGCCGGCAAGCCCCCGTT
CAAGCTGCCATCACCGCCGCGCCGTCCGTCCCGCACCGAGCTCGGCCGGC
TGCAGTCCGCACACTCGGGCTTCGGCGAGGAGTCGTCCGAGGACGAGCTG
GACGCGTCCTGCTCATGGGCGAGCGAGGTCCGGCCGCAGGGCGACCCCGG
CGCATCGCACGAAGCACGTTTGTCGGCGGCGGCGTCGCACCGCGCGTATG
GCGGGGGCGTCCGGGCCGCCGCCGCCGCCGCCGTGGCAATCGACCCGCAG
CCGCGGCGGCGGCCGGCATCGCCGCGGGGCTCGGCGAGCGTCGCTGGTGG
CAGCGTCTCCGGCAGCGTCGCCGGCAGCGTCAGCAGGAATGGTGGCGGCT
TGAATGGTGGCCGCGGCGGCGGCGACAGCGTCGACAACACTGGCCAGGAG
GTGGCTCGGGCAGACGACAGCGATTAA
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