mRNA_P-wetherbeei_contig20506.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20506.1.1
Unique NamemRNA_P-wetherbeei_contig20506.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A835YTK2_9STRA (Sec1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-15
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 EPRKKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLMPDFQNNLVK 189
            E ++ V+LVY +GG+TFLEVAALRFL R +D  F +V+ATTKIL+G +F+  LMP F N L +
Sbjct:  605 EKKRPVLLVYYVGGVTFLEVAALRFLGRQRDFPFEVVVATTKILSGDAFVRTLMPSFDNGLAQ 667          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A6H5L2P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.560e-14
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 EPRKKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLMPDFQNNLVK 189
             P++KVMLVY IGG+T++E+AALRFL+  ++  F IV ATTK+ NG  F+  L+P+F N L +
Sbjct:  633 SPKRKVMLVYFIGGVTYMEIAALRFLNAQREFPFEIVTATTKVTNGEEFLETLLPNFDNRLQR 695          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A1Z9QCA2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QCA2_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.010e-13
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    7 RKKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLMPDFQNNLVK 189
            +KKVM+VY IGG+T++E+AALRFL+   D  F IV+ATTK++NG++F+  ++P+  N L K
Sbjct:  578 KKKVMMVYFIGGVTWMEIAALRFLNSRSDFPFTIVVATTKLVNGNTFLRAILPEVDNRLGK 638          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A2R5GFC7_9STRA (Vacuolar protein sorting-associated protein 33A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFC7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.540e-13
Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 EPRKKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLMPDFQNNLVK 189
            +P KKVMLV+  GG+TF E+AALRF+S+  DC + +V+A+T  +NG +F+  L+ D +NNL +
Sbjct:  667 KPPKKVMLVFFTGGVTFAEIAALRFVSQQADCPYRLVIASTAFVNGKTFLQSLVHDVENNLQR 729          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A4D9D766_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D766_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.310e-12
Identity = 29/61 (47.54%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   10 KKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLMPDFQNNLVKT 192
            K VM+VY IGG++F+E+AA+R+LSRHKD  + I++ TTK++ G+ FI  +  +F+N L ++
Sbjct:  880 KTVMMVYFIGGVSFMEIAAMRYLSRHKDFPYSIIVCTTKLIGGNVFIESVFENFRNYLGRS 940          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A1W0A692_9STRA (Vacuolar protein sorting-associated protein 33A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A692_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.140e-12
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 EPRKKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLM 162
            E  +KVM+VY IGG+TF+E+AALR LS+  DC + I++ATTKI+NGS+ I  ++
Sbjct:  570 EEERKVMVVYFIGGVTFMEIAALRHLSKQPDCPYDIIIATTKIINGSTLIKSIV 623          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A6A4Z605_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z605_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.220e-12
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   10 KKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLM 162
            +KVM+V+ +GG+TF+E+AALR LS+  +C F IV+ATTKILNG+  I  ++
Sbjct:   24 RKVMVVFFVGGVTFMEIAALRHLSKQPECPFDIVIATTKILNGNGLIKSIV 74          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A067BUK6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BUK6_SAPPC)

HSP 1 Score: 67.8 bits (164), Expect = 1.090e-11
Identity = 29/51 (56.86%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   10 KKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLM 162
            +KVM+VY IGG+TF+E+AALR LS+  +C + I++ATTKI+NGS+ I G++
Sbjct:  574 RKVMVVYFIGGVTFMEIAALRHLSKQPECPYDIIIATTKIINGSTLIKGVV 624          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A3R6WD50_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WD50_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.150e-11
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   10 KKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLM 162
            +KVM+V+ +GG+TF+E+AALR LS+  +C F IV+ATTKILNG+  I  ++
Sbjct:   78 RKVMVVFFVGGVTFMEIAALRHLSKQPECPFDIVIATTKILNGNGLIKSIV 128          
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Match: A0A024UDH5_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UDH5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.790e-11
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   10 KKVMLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLM 162
            ++VM+VY +GG+TF+E+AALR LS+  +C F IV+ATTKILNG+S I  ++
Sbjct:  576 RRVMVVYFVGGVTFMEIAALRHLSKQPECPFDIVIATTKILNGNSLIKSIV 626          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20506.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTK2_9STRA1.290e-1557.14Sec1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A6H5L2P5_9PHAE1.560e-1452.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z9QCA2_9BACT1.010e-1352.46Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A2R5GFC7_9STRA3.540e-1349.21Vacuolar protein sorting-associated protein 33A n=... [more]
A0A4D9D766_9STRA2.310e-1247.54Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1W0A692_9STRA3.140e-1255.56Vacuolar protein sorting-associated protein 33A n=... [more]
A0A6A4Z605_9STRA3.220e-1254.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A067BUK6_SAPPC1.090e-1156.86Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A3R6WD50_9STRA1.150e-1154.90Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UDH5_9STRA2.790e-1156.86Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20506contigP-wetherbeei_contig20506:735..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008621217.1
PFAMsSec1
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K20182
KEGG Pathwayko04138,map04138
Hectar predicted targeting categorysignal peptide
Exons2
Evalue5.91e-11
EggNOG OGsCOG5158@1|root,KOG1302@2759|Eukaryota
Descriptionvesicle docking involved in exocytosis
Cds size177
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.572066-CDS-P-wetherbeei_contig20506:734..8241683186201.572066-CDS-P-wetherbeei_contig20506:734..824Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20506 735..824 -
1683186201.5833223-CDS-P-wetherbeei_contig20506:1108..11951683186201.5833223-CDS-P-wetherbeei_contig20506:1108..1195Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20506 1109..1195 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.5919645-UTR-P-wetherbeei_contig20506:1195..12131683186201.5919645-UTR-P-wetherbeei_contig20506:1195..1213Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20506 1196..1213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20506.1.1prot_P-wetherbeei_contig20506.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20506 735..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20506.1.1

>prot_P-wetherbeei_contig20506.1.1 ID=prot_P-wetherbeei_contig20506.1.1|Name=mRNA_P-wetherbeei_contig20506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
MLVYMIGGLTFLEVAALRFLSRHKDCEFGIVMATTKILNGSSFIAGLMPD
FQNNLVKT*
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mRNA from alignment at P-wetherbeei_contig20506:735..1213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20506.1.1 ID=mRNA_P-wetherbeei_contig20506.1.1|Name=mRNA_P-wetherbeei_contig20506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=479bp|location=Sequence derived from alignment at P-wetherbeei_contig20506:735..1213- (Phaeothamnion wetherbeei SAG_119_79)
GAGCCGCGGAAAAAGGTCATGCTTGTGTACATGATTGGAGGTCTGACCTT TCTGGAAGTGGCGGCCCTCCGCTTCCTGTCGCGGCACAAAGACTGTGAGT TTGGAGTTTGCCTTTGTTTCACCGATCCATCCGTTTTGCAGCATCAGCTG CAATCCTTCCTCCGCTTCCGCTTCCCATTTCCTTCCATCTTTGCTCTTTT GGTCTTCGCCAGTGTCGTGCTTGTCGTTGTGGCTGATTGGATGCCCTATC CTCCTTGTTTCTTTTTCATCCTATCCCAAAGCCAGCCTGACGCTACTATC GGTATGTTTGCACGGCTGGCTGCCCCTTTCTCTCCATTTTTCCATCCCTC CCTGCCCGGTCCGGCGGCACGGAGGCAGTCAAGTACGAGATTGTTATGGC GACGACAAAGATCCTGAACGGAAGTTCGTTCATCGCCGGCCTGATGCCGG ACTTTCAAAATAACCTTGTAAAAACATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20506:735..1213-

>mRNA_P-wetherbeei_contig20506.1.1 ID=mRNA_P-wetherbeei_contig20506.1.1|Name=mRNA_P-wetherbeei_contig20506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig20506:735..1213- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGTGTACATGATTGGAGGTCTGACCTTTCTGGAAGTGGCGGCCCT
CCGCTTCCTGTCGCGGCACAAAGACTGTGAGTTTGGAATTGTTATGGCGA
CGACAAAGATCCTGAACGGAAGTTCGTTCATCGCCGGCCTGATGCCGGAC
TTTCAAAATAACCTTGTAAAAACATAA
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