mRNA_P-wetherbeei_contig205.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig205.7.1
Unique NamemRNA_P-wetherbeei_contig205.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: D8LR97_ECTSI (DIX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR97_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.730e-34
Identity = 58/81 (71.60%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVWVDTSDANAPVPSCDGAFTAKVSRL 243
            YFIP DGDD  HPNVF LPS  V +GSVR GDV+RHFPLPG +HFRF KKFRD  VWVD +D  A VPSCDG FTAK++RL
Sbjct:    4 YFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRYHFRFKKKFRDAFVWVDIADPGAAVPSCDGVFTAKITRL 84          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: A0A836CD85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD85_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.640e-25
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVV--NGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVW 171
            YFIP DGDDA+HPNVF LPSS V   NG++RLGDV RHFPLPG +HFRF KKFRDG VW
Sbjct:    4 YFIPSDGDDADHPNVFQLPSSAVSGGNGTLRLGDVMRHFPLPGTYHFRFKKKFRDGFVW 62          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: A0A4D9D8A1_9STRA (DIX domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8A1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.720e-19
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGH-----VWVDTSDANAPVPSCDGAFTAKVSRL 243
            Y+IPGDGDDA HPN+FHLP S  V    RL DV++HFPLPGA+HFRF  +  DG      VW+D ++  A +P+ DG + AKVSR+
Sbjct:    4 YYIPGDGDDASHPNIFHLPPS--VQQPPRLRDVRQHFPLPGAYHFRFKTRL-DGTPDKKAVWMDVTEDVAELPTFDGFYIAKVSRM 86          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: A0A8J2WQP4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQP4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-19
Identity = 45/86 (52.33%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVWVDTSDANAPVPSCDGAFTAKVSRLPADGA 258
            Y +P DGDDA HPNVF L    V  G+VR+GDV+RHFPLPG FH RF ++     VW D +D  AP P   G    K SRL  D A
Sbjct:    6 YHVPEDGDDAAHPNVFEL----VSEGAVRVGDVRRHFPLPGRFHLRFRRRVAGLEVWADAADDAAPAPRLAGRILVKASRLAGDAA 87          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: A0A813H049_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H049_POLGL)

HSP 1 Score: 89.0 bits (219), Expect = 2.650e-18
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVWVDTSDANAPVPSCDGAFTAKVSRL 243
            YFIPGDGDDA+HPN F +         V+L +++  FPLPG +HFRF  K+  GHVW+D ++  + VP+CD    AKV R+
Sbjct:   16 YFIPGDGDDADHPNTFEVQHQ---GPGVKLREIRACFPLPGKYHFRFRMKWEAGHVWMDVTNEESIVPTCDDKIVAKVLRV 93          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: A0A7S2RG08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG08_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.470e-17
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHL--PSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVWVDTSDANAPVPSCDGAFTAKVSRLPAD 252
            YF+P DGD+ +HPNVF +  PSS      VRLGDV++ FPLPG +HFRF K F++  VW+D  D    VP  +G   AKVSR  A+
Sbjct:    8 YFVPEDGDEEDHPNVFTISRPSS-----KVRLGDVKKTFPLPGRYHFRFKKAFKNTFVWLDILDDYDVVPRFEGQLVAKVSRTSAN 88          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: A0A2R5GFE7_9STRA (DIX domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFE7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.110e-16
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVWVDTSDANAPVPSCDGAFTAKVSRLPA 249
            YF+P DGDD  HPN F L         VR  DV+  FPLPGA+H RF K F++ +VW+D  D    VP  +G   AK+SRL A
Sbjct:    8 YFVPEDGDDEAHPNFFSLSKPAA---KVRAADVRAAFPLPGAYHLRFKKAFKNTYVWLDVVDDGQIVPRFEGQIFAKISRLSA 87          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: UPI0007114B76 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007114B76)

HSP 1 Score: 80.9 bits (198), Expect = 4.920e-15
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVWVDTSDANAPVPSCDGAFTAKVSRLPADGA 258
            Y+IP DGDD +HPNV+ +   +     + + D++  FP+PG ++FRF + F+   +W D S  +  VPS DG    KV+RLPA  A
Sbjct:    9 YYIPEDGDDMDHPNVYSIDKKSTT---ITVTDIRNSFPIPGTYYFRFKRAFKKTWIWFDVSKDDEVVPSFDGTIMMKVTRLPASAA 91          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: D8M8I1_BLAHO (DIX domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M8I1_BLAHO)

HSP 1 Score: 79.3 bits (194), Expect = 1.500e-14
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDGHVWVDTSDANAPVPSCDGAFTAKVSRLPADGA 258
            Y+IP DGD+A+HPNV  L  +      V L D++  FP+PG ++FRF + F++  +W D ++ +  VP  DG    K +RLPA  A
Sbjct:    9 YYIPEDGDEADHPNVMTLDKNA---SQVTLKDIREAFPIPGTYYFRFKRTFKNSWIWFDVTEDSEVVPKFDGLIFVKATRLPASAA 91          
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Match: A0A7S1AV14_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AV14_NOCSC)

HSP 1 Score: 79.0 bits (193), Expect = 4.540e-14
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKKFRDG-HVWVDTSDANAPVPSCDGAFTAKVSRLPADGA 258
            Y IPGDGDDA+ PNVF +      +G++ L D++  FPLPG +HFRF  K+ D   VW+D ++  + VP  DG   AKV RL  D A
Sbjct:   39 YHIPGDGDDADTPNVFPV---VTPSGAILLQDIRCKFPLPGTYHFRFKMKWGDSTSVWMDVTNEKSQVPMHDGKIVAKVIRLSWDTA 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig205.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LR97_ECTSI4.730e-3471.60DIX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CD85_9STRA9.640e-2576.27Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4D9D8A1_9STRA1.720e-1954.65DIX domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A8J2WQP4_9STRA1.860e-1952.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A813H049_POLGL2.650e-1848.15Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S2RG08_9STRA9.470e-1751.16Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GFE7_9STRA4.110e-1648.19DIX domain-containing protein n=1 Tax=Hondaea ferm... [more]
UPI0007114B764.920e-1540.70hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
D8M8I1_BLAHO1.500e-1440.70DIX domain-containing protein n=1 Tax=Blastocystis... [more]
A0A7S1AV14_NOCSC4.540e-1447.13Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig205contigP-wetherbeei_contig205:9746..10732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR97
PFAMsDIX
Model size751
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.76e-35
EggNOG OGs2AQHG@1|root,2RZJ0@2759|Eukaryota
Ec32 ortholog descriptionDIX domain protein
Ec32 orthologEc-06_003340.1
DescriptionApicomplexan specific region near N-terminus. Source PGD
Cds size750
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.3636165-CDS-P-wetherbeei_contig205:9745..99111683186201.3636165-CDS-P-wetherbeei_contig205:9745..9911Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig205 9746..9911 +
1683186201.3737805-CDS-P-wetherbeei_contig205:10147..107311683186201.3737805-CDS-P-wetherbeei_contig205:10147..10731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig205 10148..10731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig205.7.1prot_P-wetherbeei_contig205.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig205 9746..10731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig205.7.1

>prot_P-wetherbeei_contig205.7.1 ID=prot_P-wetherbeei_contig205.7.1|Name=mRNA_P-wetherbeei_contig205.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=250bp
YFIPGDGDDAEHPNVFHLPSSTVVNGSVRLGDVQRHFPLPGAFHFRFMKK
FRDGHVWVDTSDANAPVPSCDGAFTAKVSRLPADGASFTPDFQQATSQPP
AAFAASGFSGGGASFGNSGAGGAYCVGRSGNCKRFYALPLSTQTSHASER
MEGHELLQVAPLPGFRSAVQWARVAVRICTALTVPGFGEDELCEFNPSFG
SVKTYIRPVIFSGKAHSNAFPPPAFFFCFPTTSSLQPQRGWMRTICSTWA
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mRNA from alignment at P-wetherbeei_contig205:9746..10732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig205.7.1 ID=mRNA_P-wetherbeei_contig205.7.1|Name=mRNA_P-wetherbeei_contig205.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig205:9746..10732+ (Phaeothamnion wetherbeei SAG_119_79)
TATTTCATTCCGGGAGACGGTGACGACGCGGAGCATCCCAACGTATTCCA CCTGCCAAGCAGCACCGTGGTGAACGGCAGCGTCCGCCTCGGGGATGTTC AACGACACTTCCCGCTGCCGGGCGCGTTCCACTTTAGGTTTATGAAGAAA TTTCGAGACGGGCATGGTGAGTGCCGACTGTGTTCTCCTGAAGCTCTCGT CTTCCCGCACAATCTCATGCAATCGAAGCTCGAAAGCTTTGAGAGCTTGC CCTGGCGTTACATACGAGGCGGCTTCGTAAATAGGATTTCCGCCGCCATC CTCTGACTGGCGGCGATTGGCGACGATATGGAAAGAAAAAAGATTTGTTT ATCCTTGTCTTCCATCCTCACCTCTTACCGCCCTCTCTCTTGATGATTGC AGTATGGGTGGACACATCCGATGCGAACGCTCCCGTGCCGAGTTGCGACG GCGCTTTCACTGCGAAGGTGTCGCGGTTACCGGCGGACGGCGCGAGCTTC ACCCCAGACTTCCAGCAGGCGACATCGCAACCGCCCGCCGCTTTTGCCGC AAGCGGCTTTAGTGGAGGAGGTGCCTCCTTTGGAAATAGCGGAGCAGGTG GGGCTTATTGTGTAGGGAGGAGTGGTAATTGTAAACGGTTTTATGCTCTT CCTTTGTCCACTCAAACCAGTCATGCCTCAGAGCGAATGGAAGGCCATGA GCTGCTTCAGGTTGCACCACTTCCCGGCTTCCGATCTGCGGTACAATGGG CGCGGGTGGCTGTAAGAATCTGCACCGCTCTGACTGTCCCGGGCTTTGGG GAGGACGAGCTTTGTGAATTCAATCCTTCCTTCGGCAGCGTAAAGACGTA CATCCGTCCTGTCATCTTCTCCGGGAAAGCCCACAGCAACGCGTTCCCCC CTCCCGCCTTTTTCTTCTGCTTCCCCACCACTTCTTCCCTTCAGCCTCAA CGGGGCTGGATGCGAACGATTTGCTCAACATGGGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig205:9746..10732+

>mRNA_P-wetherbeei_contig205.7.1 ID=mRNA_P-wetherbeei_contig205.7.1|Name=mRNA_P-wetherbeei_contig205.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig205:9746..10732+ (Phaeothamnion wetherbeei SAG_119_79)
TATTTCATTCCGGGAGACGGTGACGACGCGGAGCATCCCAACGTATTCCA
CCTGCCAAGCAGCACCGTGGTGAACGGCAGCGTCCGCCTCGGGGATGTTC
AACGACACTTCCCGCTGCCGGGCGCGTTCCACTTTAGGTTTATGAAGAAA
TTTCGAGACGGGCATGTATGGGTGGACACATCCGATGCGAACGCTCCCGT
GCCGAGTTGCGACGGCGCTTTCACTGCGAAGGTGTCGCGGTTACCGGCGG
ACGGCGCGAGCTTCACCCCAGACTTCCAGCAGGCGACATCGCAACCGCCC
GCCGCTTTTGCCGCAAGCGGCTTTAGTGGAGGAGGTGCCTCCTTTGGAAA
TAGCGGAGCAGGTGGGGCTTATTGTGTAGGGAGGAGTGGTAATTGTAAAC
GGTTTTATGCTCTTCCTTTGTCCACTCAAACCAGTCATGCCTCAGAGCGA
ATGGAAGGCCATGAGCTGCTTCAGGTTGCACCACTTCCCGGCTTCCGATC
TGCGGTACAATGGGCGCGGGTGGCTGTAAGAATCTGCACCGCTCTGACTG
TCCCGGGCTTTGGGGAGGACGAGCTTTGTGAATTCAATCCTTCCTTCGGC
AGCGTAAAGACGTACATCCGTCCTGTCATCTTCTCCGGGAAAGCCCACAG
CAACGCGTTCCCCCCTCCCGCCTTTTTCTTCTGCTTCCCCACCACTTCTT
CCCTTCAGCCTCAACGGGGCTGGATGCGAACGATTTGCTCAACATGGGCC
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