mRNA_P-wetherbeei_contig205.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig205.6.1
Unique Name	mRNA_P-wetherbeei_contig205.6.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig205.6.1 vs. uniprot
Match: A0A6H5JC44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC44_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.320e-8
Identity = 57/182 (31.32%), Postives = 72/182 (39.56%), Query Frame = 1

Query: 1969 ADAPALAVALRRRIR-RSGWRDGDGVAWKHVVVRLVRRGRFPDFSFSTFSRRRKQQRTGFGPGSAGLGDGGCFGGSGSSSXXXXXXXXXXXXXXXXXXXSDVLTDLLAVVLPLADDYDPTHQALGLSALRHLLAQLTPTELAWHRPVLAGMLQRVLR-GAQEPAVVWLAAACARVVLDALPR 2508
            A A  L  ALR   R R GWR+  GV  KH     +RR RFP FS +                                                       L   L + LPLADDYDP HQA+G S L  L A+  P EL WHR +L  +L+R +R G ++P+   L    A  +L   P+
Sbjct:  761 AAAETLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAA------------------------------------------------------LGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGWHRGLLLEVLERGIRCGGRDPSASALCMTAAVRLLRCSPK 888

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BLAST of mRNA_P-wetherbeei_contig205.6.1 vs. uniprot
Match: D7FT98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT98_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-6
Identity = 57/182 (31.32%), Postives = 72/182 (39.56%), Query Frame = 1

Query: 1969 ADAPALAVALRRRIR-RSGWRDGDGVAWKHVVVRLVRRGRFPDFSFSTFSRRRKQQRTGFGPGSAGLGDGGCFGGSGSSSXXXXXXXXXXXXXXXXXXXSDVLTDLLAVVLPLADDYDPTHQALGLSALRHLLAQLTPTELAWHRPVLAGMLQRVLR-GAQEPAVVWLAAACARVVLDALPR 2508
            A A  L  ALR   R R GWR+  GV  KH     +RR RFP FS +                                                       L   L + LPLADDYDP HQA+G S L  L A+  P EL  HR +L  +L+R +R G ++P+    +A C   V+  L R
Sbjct:  758 AAAETLMRALRAATRARGGWREDAGVGIKHAASAAIRRLRFPLFSGAA------------------------------------------------------LGHALPLALPLADDYDPAHQAVGFSLLLRLFAEAPPAELGLHRGLLLEVLERGIRCGGRDPSA---SALCMAAVVRLLRR 882

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig205.6.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig205.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JC44_9PHAE	2.320e-8	31.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FT98_ECTSI	1.040e-6	31.32	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig205	contig	P-wetherbeei_contig205:6957..9556 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	2601
Hectar predicted targeting category	other localisation
Exons	1
Ec32 ortholog description	Armadillo-type fold
Ec32 ortholog	Ec-06_003590.1
Cds size	2598

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186201.1640885-CDS-P-wetherbeei_contig205:6958..9556	1683186201.1640885-CDS-P-wetherbeei_contig205:6958..9556	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig205 6959..9556 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig205.6.1	prot_P-wetherbeei_contig205.6.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig205 6959..9556 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig205:6957..9556-
coding sequence from alignment at P-wetherbeei_contig205:6957..9556-

protein sequence of mRNA_P-wetherbeei_contig205.6.1

>prot_P-wetherbeei_contig205.6.1 ID=prot_P-wetherbeei_contig205.6.1|Name=mRNA_P-wetherbeei_contig205.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=866bp
SAASFYFLFLGKQHCCGRTTGKKKKEEKKDKRGKRKMAGPREALAATVAE
VVNALPDSELVKELGAAIASFLEAKITDPLLVALVQLARCVGRTAKNSRL
KVDALHALRLGIELGRPAAEPEFLEKGVPAFLDASRADVPKVRVAACGVL
EAWLLGDPPHATATLLASTPDAWQLLALAQDDFPQVRAAADAALPVQSLP
EPVVATLADRIIQTLGSGEGGSAFQTACRCFRALASRASRDEQGAAADAV
LALLTECTIQPPDEPHWQGRRHLGSLDAADSAEASALLRGMGAAAACSDW
AARLAQDAVASFGAACDAVEQAAALLAATDESEGSHCGFAVRKWREAYCL
LVLLELCVAGGAATIQDNATPPPLEQKAPTAGAEAKEEVALPGEPAGAAA
ARALWSALDAMLTRTPPTHVRLHQLDRPSEGAAQCAKWLSAAACILLRLT
AVAAALVPQDAAAAAPAAAASTAAPAAATMPARGGGGSGSEAEAQLEEER
DCQLLLSLLAFEDGATAADAPSTWIAGPLSPAQQQQLQEQRQSQQVAGGG
GTTTAAAAATAAAGESDDLLRPVSWELSAWQDGAARPMLTTQWAADAATR
SLAAAAIGVVCARLCPPSAAAIAAANAPQMAEKQAGTAKATAAAVSGADP
VAGLMAADAPALAVALRRRIRRSGWRDGDGVAWKHVVVRLVRRGRFPDFS
FSTFSRRRKQQRTGFGPGSAGLGDGGCFGGSGSSSFGGIGGGGSGGSGRG
GGGGSDVLTDLLAVVLPLADDYDPTHQALGLSALRHLLAQLTPTELAWHR
PVLAGMLQRVLRGAQEPAVVWLAAACARVVLDALPRAERPTAAAEARTLA
LQCAQRCGGSATAAGR

mRNA from alignment at P-wetherbeei_contig205:6957..9556-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig205.6.1 ID=mRNA_P-wetherbeei_contig205.6.1|Name=mRNA_P-wetherbeei_contig205.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2600bp|location=Sequence derived from alignment at P-wetherbeei_contig205:6957..9556- (Phaeothamnion wetherbeei SAG_119_79)
TCTGCAGCTTCCTTCTATTTTCTGTTTTTGGGCAAACAGCACTGCTGTGG
ACGCACCACGGGGAAAAAGAAAAAGGAGGAAAAAAAGGACAAAAGAGGAA
AGAGAAAAATGGCGGGTCCTCGAGAAGCCTTGGCTGCGACGGTGGCGGAA
GTGGTGAACGCTCTTCCGGATTCAGAGTTGGTGAAGGAGCTTGGCGCTGC
TATCGCGTCTTTCCTCGAGGCGAAGATAACAGATCCTCTACTCGTCGCAT
TGGTACAACTCGCACGCTGCGTCGGGCGCACTGCCAAGAATTCTCGGCTC
AAAGTCGATGCTCTTCACGCTTTGCGGCTCGGGATCGAGCTCGGGCGTCC
CGCGGCCGAGCCTGAGTTCTTGGAGAAAGGGGTTCCTGCATTCCTCGACG
CATCTCGAGCAGACGTTCCCAAGGTACGCGTCGCGGCATGTGGCGTCCTC
GAGGCCTGGCTTCTCGGCGACCCACCGCATGCAACGGCAACTTTGCTCGC
CTCCACGCCAGATGCGTGGCAGCTGCTTGCTCTTGCTCAAGATGACTTCC
CGCAGGTTCGCGCAGCGGCGGATGCAGCCCTGCCGGTGCAGTCGCTGCCG
GAGCCCGTCGTCGCTACTCTCGCGGATCGCATCATACAAACGCTCGGTTC
AGGCGAAGGCGGAAGCGCCTTTCAAACCGCGTGCCGATGCTTTCGAGCAC
TTGCCTCGCGAGCCTCGCGAGATGAACAGGGCGCGGCGGCCGATGCGGTG
CTTGCACTCCTCACAGAATGCACGATTCAGCCCCCGGACGAGCCGCACTG
GCAAGGTCGGCGGCACTTGGGCAGTCTGGACGCCGCGGATTCGGCCGAAG
CATCGGCTCTGTTGCGGGGCATGGGCGCTGCTGCCGCGTGCAGCGACTGG
GCGGCACGACTGGCGCAGGACGCCGTTGCATCCTTCGGAGCGGCGTGTGA
TGCCGTGGAGCAGGCGGCGGCGCTGTTGGCCGCGACCGACGAGAGCGAGG
GCAGCCACTGTGGCTTTGCCGTCCGAAAATGGCGCGAGGCCTATTGCCTG
TTGGTCTTGCTGGAGCTGTGCGTCGCGGGCGGCGCAGCAACAATTCAAGA
CAACGCGACGCCGCCGCCACTGGAACAAAAGGCGCCTACGGCTGGAGCTG
AGGCGAAAGAAGAAGTGGCCCTGCCCGGGGAACCGGCGGGGGCCGCGGCG
GCCCGGGCGCTGTGGTCCGCGCTGGACGCGATGCTCACCCGTACGCCTCC
CACACACGTGCGACTGCACCAGCTCGACCGCCCGTCGGAAGGAGCCGCGC
AGTGCGCGAAATGGCTGAGCGCCGCCGCGTGCATCTTGCTTCGGCTGACC
GCCGTAGCGGCGGCACTGGTGCCGCAGGACGCTGCTGCCGCCGCGCCTGC
CGCGGCTGCGTCGACCGCTGCGCCGGCAGCTGCTACTATGCCGGCCCGCG
GCGGCGGAGGAAGCGGTTCGGAGGCGGAAGCGCAGTTGGAGGAGGAGCGA
GATTGCCAGCTGCTGTTGTCGCTTTTGGCCTTCGAGGACGGCGCGACCGC
CGCAGATGCGCCGTCCACGTGGATTGCCGGACCGCTCAGCCCGGCGCAGC
AACAGCAGCTACAGGAGCAGCGGCAATCGCAGCAGGTGGCTGGAGGCGGC
GGCACGACAACAGCAGCAGCGGCGGCGACTGCGGCCGCCGGAGAGAGTGA
CGACCTCTTGCGGCCGGTCTCGTGGGAGCTCAGCGCGTGGCAAGACGGCG
CTGCCCGGCCAATGTTGACGACACAGTGGGCGGCCGACGCCGCCACCCGC
TCGCTGGCCGCCGCGGCGATTGGTGTGGTGTGTGCGCGACTGTGCCCGCC
CTCAGCTGCGGCAATAGCAGCGGCAAATGCGCCGCAGATGGCGGAGAAGC
AAGCGGGGACGGCGAAAGCAACGGCAGCAGCGGTTTCCGGCGCAGACCCG
GTCGCCGGCCTGATGGCCGCCGACGCGCCGGCTCTGGCGGTGGCGCTGCG
GCGGCGGATCCGGCGCTCGGGGTGGCGCGACGGCGACGGCGTCGCGTGGA
AGCATGTCGTGGTCCGGCTCGTGCGTCGCGGCCGCTTCCCAGACTTCTCC
TTTTCTACTTTCTCGAGGCGGCGGAAGCAGCAGCGGACGGGCTTTGGCCC
TGGCAGTGCAGGCCTTGGCGATGGTGGCTGCTTCGGCGGCAGCGGCAGCA
GCAGTTTCGGCGGCATCGGCGGCGGTGGAAGCGGCGGCAGCGGCAGGGGC
GGCGGCGGTGGTTCGGACGTGCTGACAGACCTGCTGGCGGTGGTGCTGCC
GCTGGCGGACGACTACGACCCCACGCACCAGGCGCTGGGCCTCTCGGCGC
TGCGGCACCTTCTGGCGCAACTGACGCCGACCGAGCTAGCGTGGCACCGC
CCCGTCCTGGCCGGCATGCTGCAGCGCGTCCTGCGGGGTGCGCAGGAACC
AGCCGTTGTGTGGCTGGCGGCGGCGTGTGCACGGGTGGTGCTCGACGCGC
TGCCGCGCGCCGAGCGACCAACGGCTGCCGCCGAGGCGCGCACGCTGGCG
CTGCAGTGTGCGCAGCGCTGCGGCGGGAGCGCGACGGCCGCCGGGCGGCG

Coding sequence (CDS) from alignment at P-wetherbeei_contig205:6957..9556-

>mRNA_P-wetherbeei_contig205.6.1 ID=mRNA_P-wetherbeei_contig205.6.1|Name=mRNA_P-wetherbeei_contig205.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2598bp|location=Sequence derived from alignment at P-wetherbeei_contig205:6957..9556- (Phaeothamnion wetherbeei SAG_119_79)
TCTGCAGCTTCCTTCTATTTTCTGTTTTTGGGCAAACAGCACTGCTGTGG
ACGCACCACGGGGAAAAAGAAAAAGGAGGAAAAAAAGGACAAAAGAGGAA
AGAGAAAAATGGCGGGTCCTCGAGAAGCCTTGGCTGCGACGGTGGCGGAA
GTGGTGAACGCTCTTCCGGATTCAGAGTTGGTGAAGGAGCTTGGCGCTGC
TATCGCGTCTTTCCTCGAGGCGAAGATAACAGATCCTCTACTCGTCGCAT
TGGTACAACTCGCACGCTGCGTCGGGCGCACTGCCAAGAATTCTCGGCTC
AAAGTCGATGCTCTTCACGCTTTGCGGCTCGGGATCGAGCTCGGGCGTCC
CGCGGCCGAGCCTGAGTTCTTGGAGAAAGGGGTTCCTGCATTCCTCGACG
CATCTCGAGCAGACGTTCCCAAGGTACGCGTCGCGGCATGTGGCGTCCTC
GAGGCCTGGCTTCTCGGCGACCCACCGCATGCAACGGCAACTTTGCTCGC
CTCCACGCCAGATGCGTGGCAGCTGCTTGCTCTTGCTCAAGATGACTTCC
CGCAGGTTCGCGCAGCGGCGGATGCAGCCCTGCCGGTGCAGTCGCTGCCG
GAGCCCGTCGTCGCTACTCTCGCGGATCGCATCATACAAACGCTCGGTTC
AGGCGAAGGCGGAAGCGCCTTTCAAACCGCGTGCCGATGCTTTCGAGCAC
TTGCCTCGCGAGCCTCGCGAGATGAACAGGGCGCGGCGGCCGATGCGGTG
CTTGCACTCCTCACAGAATGCACGATTCAGCCCCCGGACGAGCCGCACTG
GCAAGGTCGGCGGCACTTGGGCAGTCTGGACGCCGCGGATTCGGCCGAAG
CATCGGCTCTGTTGCGGGGCATGGGCGCTGCTGCCGCGTGCAGCGACTGG
GCGGCACGACTGGCGCAGGACGCCGTTGCATCCTTCGGAGCGGCGTGTGA
TGCCGTGGAGCAGGCGGCGGCGCTGTTGGCCGCGACCGACGAGAGCGAGG
GCAGCCACTGTGGCTTTGCCGTCCGAAAATGGCGCGAGGCCTATTGCCTG
TTGGTCTTGCTGGAGCTGTGCGTCGCGGGCGGCGCAGCAACAATTCAAGA
CAACGCGACGCCGCCGCCACTGGAACAAAAGGCGCCTACGGCTGGAGCTG
AGGCGAAAGAAGAAGTGGCCCTGCCCGGGGAACCGGCGGGGGCCGCGGCG
GCCCGGGCGCTGTGGTCCGCGCTGGACGCGATGCTCACCCGTACGCCTCC
CACACACGTGCGACTGCACCAGCTCGACCGCCCGTCGGAAGGAGCCGCGC
AGTGCGCGAAATGGCTGAGCGCCGCCGCGTGCATCTTGCTTCGGCTGACC
GCCGTAGCGGCGGCACTGGTGCCGCAGGACGCTGCTGCCGCCGCGCCTGC
CGCGGCTGCGTCGACCGCTGCGCCGGCAGCTGCTACTATGCCGGCCCGCG
GCGGCGGAGGAAGCGGTTCGGAGGCGGAAGCGCAGTTGGAGGAGGAGCGA
GATTGCCAGCTGCTGTTGTCGCTTTTGGCCTTCGAGGACGGCGCGACCGC
CGCAGATGCGCCGTCCACGTGGATTGCCGGACCGCTCAGCCCGGCGCAGC
AACAGCAGCTACAGGAGCAGCGGCAATCGCAGCAGGTGGCTGGAGGCGGC
GGCACGACAACAGCAGCAGCGGCGGCGACTGCGGCCGCCGGAGAGAGTGA
CGACCTCTTGCGGCCGGTCTCGTGGGAGCTCAGCGCGTGGCAAGACGGCG
CTGCCCGGCCAATGTTGACGACACAGTGGGCGGCCGACGCCGCCACCCGC
TCGCTGGCCGCCGCGGCGATTGGTGTGGTGTGTGCGCGACTGTGCCCGCC
CTCAGCTGCGGCAATAGCAGCGGCAAATGCGCCGCAGATGGCGGAGAAGC
AAGCGGGGACGGCGAAAGCAACGGCAGCAGCGGTTTCCGGCGCAGACCCG
GTCGCCGGCCTGATGGCCGCCGACGCGCCGGCTCTGGCGGTGGCGCTGCG
GCGGCGGATCCGGCGCTCGGGGTGGCGCGACGGCGACGGCGTCGCGTGGA
AGCATGTCGTGGTCCGGCTCGTGCGTCGCGGCCGCTTCCCAGACTTCTCC
TTTTCTACTTTCTCGAGGCGGCGGAAGCAGCAGCGGACGGGCTTTGGCCC
TGGCAGTGCAGGCCTTGGCGATGGTGGCTGCTTCGGCGGCAGCGGCAGCA
GCAGTTTCGGCGGCATCGGCGGCGGTGGAAGCGGCGGCAGCGGCAGGGGC
GGCGGCGGTGGTTCGGACGTGCTGACAGACCTGCTGGCGGTGGTGCTGCC
GCTGGCGGACGACTACGACCCCACGCACCAGGCGCTGGGCCTCTCGGCGC
TGCGGCACCTTCTGGCGCAACTGACGCCGACCGAGCTAGCGTGGCACCGC
CCCGTCCTGGCCGGCATGCTGCAGCGCGTCCTGCGGGGTGCGCAGGAACC
AGCCGTTGTGTGGCTGGCGGCGGCGTGTGCACGGGTGGTGCTCGACGCGC
TGCCGCGCGCCGAGCGACCAACGGCTGCCGCCGAGGCGCGCACGCTGGCG
CTGCAGTGTGCGCAGCGCTGCGGCGGGAGCGCGACGGCCGCCGGGCGG