mRNA_P-wetherbeei_contig205.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig205.5.1
Unique NamemRNA_P-wetherbeei_contig205.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig205.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig205contigP-wetherbeei_contig205:6358..6910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size554
Hectar predicted targeting categorysignal peptide
Exons1
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.3203328-UTR-P-wetherbeei_contig205:6357..64121683186201.3203328-UTR-P-wetherbeei_contig205:6357..6412Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig205 6358..6412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.3284707-CDS-P-wetherbeei_contig205:6412..69101683186201.3284707-CDS-P-wetherbeei_contig205:6412..6910Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig205 6413..6910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig205.5.1prot_P-wetherbeei_contig205.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig205 6413..6910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig205.5.1

>prot_P-wetherbeei_contig205.5.1 ID=prot_P-wetherbeei_contig205.5.1|Name=mRNA_P-wetherbeei_contig205.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
VEGFEVAPLLRPLLLALLPLLRAPDPGLQLLALRALHATLIAVWPRVPSH
AGKLVVGILWAAGAGATNDDGGGENGDGGSDGDTGSRMDGRRRDPRVEAV
RRHGLRLLALVLVLGGDAAAAAAKEVAQNLSALAPACAAAQTMAAAATAA
ESLQAAAAEERRCGT*
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mRNA from alignment at P-wetherbeei_contig205:6358..6910-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig205.5.1 ID=mRNA_P-wetherbeei_contig205.5.1|Name=mRNA_P-wetherbeei_contig205.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=553bp|location=Sequence derived from alignment at P-wetherbeei_contig205:6358..6910- (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGGGGTTCGAGGTGGCGCCGCTGCTGCGGCCACTGCTACTAGCGCT
GCTGCCGCTGCTGCGAGCGCCTGACCCGGGCTTGCAGCTGCTGGCGCTGC
GGGCGCTCCACGCCACCTTGATCGCCGTCTGGCCGCGCGTTCCTAGCCAC
GCCGGCAAGCTGGTCGTGGGGATCCTCTGGGCGGCGGGCGCGGGAGCGAC
TAATGACGATGGCGGCGGCGAGAACGGCGACGGCGGCAGCGACGGCGACA
CAGGCAGCCGAATGGATGGCCGACGGCGGGATCCGAGAGTGGAGGCGGTG
CGGCGGCACGGCCTGCGGCTACTGGCGCTTGTTCTTGTTCTGGGAGGCGA
CGCTGCGGCGGCAGCCGCGAAGGAGGTGGCGCAGAACCTTTCGGCGCTGG
CGCCGGCTTGTGCTGCCGCCCAGACCATGGCGGCGGCGGCGACGGCGGCA
GAGTCGCTGCAGGCGGCGGCGGCGGAAGAGCGACGCTGCGGGACTTAAGC
TTCTTTCAAAAAACGGTTTGGAAAGCTAATGGAAAGCTGACCTCACCCCT
TCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig205:6358..6910-

>mRNA_P-wetherbeei_contig205.5.1 ID=mRNA_P-wetherbeei_contig205.5.1|Name=mRNA_P-wetherbeei_contig205.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig205:6358..6910- (Phaeothamnion wetherbeei SAG_119_79)
GTGGAGGGGTTCGAGGTGGCGCCGCTGCTGCGGCCACTGCTACTAGCGCT
GCTGCCGCTGCTGCGAGCGCCTGACCCGGGCTTGCAGCTGCTGGCGCTGC
GGGCGCTCCACGCCACCTTGATCGCCGTCTGGCCGCGCGTTCCTAGCCAC
GCCGGCAAGCTGGTCGTGGGGATCCTCTGGGCGGCGGGCGCGGGAGCGAC
TAATGACGATGGCGGCGGCGAGAACGGCGACGGCGGCAGCGACGGCGACA
CAGGCAGCCGAATGGATGGCCGACGGCGGGATCCGAGAGTGGAGGCGGTG
CGGCGGCACGGCCTGCGGCTACTGGCGCTTGTTCTTGTTCTGGGAGGCGA
CGCTGCGGCGGCAGCCGCGAAGGAGGTGGCGCAGAACCTTTCGGCGCTGG
CGCCGGCTTGTGCTGCCGCCCAGACCATGGCGGCGGCGGCGACGGCGGCA
GAGTCGCTGCAGGCGGCGGCGGCGGAAGAGCGACGCTGCGGGACTTAA
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