mRNA_P-wetherbeei_contig205.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig205.1.1
Unique NamemRNA_P-wetherbeei_contig205.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A6V1QFZ2_HETAK (Cilia- and flagella-associated protein 36 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFZ2_HETAK)

HSP 1 Score: 122 bits (307), Expect = 3.430e-32
Identity = 65/143 (45.45%), Postives = 89/143 (62.24%), Query Frame = 2
Query:   56 HPDYQEMPSESKFSGTKQEGKESAVRKNDDVDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKE 484
            H   +E   E +  G+ +E   +A        +V+ V  FFYE++EFA  FE FV+ N H IDL   E +LE+TDLY  YQ+LFE  L  FIE QGS+V EFY +VR A E+DP    ++  +I+A+T DFD+F+ MM+E KE
Sbjct:    5 HEGKEEFAEEEETKGSSKEVPNAAKS------IVEKVQEFFYEDDEFAAVFEKFVEENAHTIDLDSDENKLEYTDLYNEYQKLFESQLEGFIESQGSSVLEFYSEVRKANEEDPDSATAVLGRIMASTCDFDVFLYMMKEEKE 141          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: H3GGW1_PHYRM (Cilia- and flagella-associated protein 36 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGW1_PHYRM)

HSP 1 Score: 122 bits (306), Expect = 7.440e-32
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 2
Query:   71 EMPSESKFSGTKQEGKESAVRKNDD--------VDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKES 487
            + PSESK     + G E A  K+DD         DLVD V +FF++N+EFA  FEAF + +CH  DL   E +LE+TD+Y  +  LFE+ L  +I+ QG+TV EFY+ VR A E D      + ++IL ATADFD+F+LMMR+TKE+
Sbjct:   23 DAPSESK----PRAGHEKASAKDDDGSSFDPGSSDLVDKVISFFFDNDEFAHTFEAFAEIHCHAFDLDSDEMKLEYTDIYNEFLALFEEKLEAYIQSQGATVHEFYDLVRRAYEVDRQSGTVLCSEILVATADFDVFVLMMRQTKET 165          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A067CE96_SAPPC (Cilia- and flagella-associated protein 36 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CE96_SAPPC)

HSP 1 Score: 119 bits (298), Expect = 7.970e-31
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  113 GKESAVRKNDDVDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKESMR 493
            G + A        +VD V  FF+EN+EF   FE F   +C   D    E +LE+TD+Y  + +LFE  + EFIE QGS+V EFY+ VR A EKDP G  +I++++L AT+DFD+F+LMM++TKE+ R
Sbjct:   28 GAKDAAEAKGGPTIVDKVIAFFFENDEFCATFERFADKHCDIFDPDADEMQLEYTDVYNQFTKLFETKIEEFIESQGSSVAEFYDLVRKAHEKDPHGTIAIYSRMLVATSDFDVFVLMMKQTKEAQR 154          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A225W6K4_9STRA (Cilia- and flagella-associated protein 36 n=2 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6K4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.340e-30
Identity = 63/132 (47.73%), Postives = 87/132 (65.91%), Query Frame = 2
Query:   95 SGTKQEGKESAVR-KNDDVDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKES 487
            +G K + K  A    ++D DLV+ V +FF++N+EFA  FE F + +CH  DL   E +LE+TD+Y  +  LFE  L  FI  QG+TV+EFYE VR A E D      + ++IL ATADFD+F+LMMR+TKE+
Sbjct:   34 AGAKDDAKNDANNFDSEDDDLVNKVISFFFDNDEFAHTFETFAEHHCHAFDLDSEEMKLEYTDIYNEFLALFEQKLEAFILSQGATVQEFYELVRKAYEVDRESGTVLCSEILVATADFDVFVLMMRQTKEA 165          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A6G0XJ32_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJ32_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.520e-30
Identity = 62/147 (42.18%), Postives = 94/147 (63.95%), Query Frame = 2
Query:   74 MPSESKFSGTKQEGKE-----SAVRKNDDVDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKESMRDA 499
            MPSESK S    + KE     SA    +   ++D V  FF+ENE+F    + F   +C   D++  E +LE+TDLYQ + +LFED + EFIE QGS+V+EFY+ V+ A +KDP G  + ++++L AT DF +F+LMM++ K++  +A
Sbjct:    1 MPSESKHSRRDDDAKEVKDSDSAFDAKEGPTIIDRVVGFFFENEDFCKALDHFADNHCDIFDVESEEMQLEYTDLYQQFTKLFEDKIEEFIEAQGSSVKEFYKLVKKAHDKDPHGTIATYSRMLVATTDFAVFVLMMKQAKQAKVEA 147          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A1V9YAT2_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAT2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 9.120e-30
Identity = 67/153 (43.79%), Postives = 94/153 (61.44%), Query Frame = 2
Query:   74 MPSESKFS----------GTKQE---GKESAVRKNDDVDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKESMR 493
            MP+ESK S          GT+ E   G +          +VD V  FF+EN+EF   FE F + +C   D    E +LE+TD+Y  + +LFE  + EFIE QGS+V EFY+ VR A EKDP G  +I++++L AT+DFD+F+LMM++TKE+ R
Sbjct:  175 MPAESKSSCHDDAKAAAKGTRDEDEGGVKDVAEAKGGPTIVDKVIAFFFENDEFCATFERFAEKHCDIFDPDADEMQLEYTDIYNKFAKLFETKIEEFIESQGSSVAEFYDIVRKAHEKDPHGTIAIYSRMLVATSDFDVFVLMMKQTKETQR 327          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: G4ZTS8_PHYSP (Cilia- and flagella-associated protein 36 n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZTS8_PHYSP)

HSP 1 Score: 116 bits (291), Expect = 1.160e-29
Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 2
Query:   74 MPSESKFSGTKQEGKES--------------AVRKNDDV--------DLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKES 487
            MPSESK S   ++ K +              A  K+DD         DLV+ V +FF++N+EFA  FE F + +CH  DL   E +LE+TD+Y  +  LFE+ L  +I  QG+TV EFYE VR A E D      + ++IL ATADFD+F+LMMR+TKE+
Sbjct:    1 MPSESKTSADSKDEKHAGGSSESKAHGGHAKAGAKDDDGSSFDPDNNDLVNKVISFFFDNDEFAHTFETFAETHCHAFDLDSDEMKLEYTDIYNEFLALFEEKLEAYIRSQGATVHEFYELVRRAYELDRQSGTVLCSEILVATADFDVFVLMMRQTKEA 160          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A2P4Y0G2_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y0G2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.190e-29
Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 2
Query:   77 PSESKFSGTKQEGKESAVRKND-------DVDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKES 487
            PSE+K       G E A  K+D       + DLV+ V +FF++N+EFA  FEAF + +CH  DL   E +LE+TD+Y  +  LFE  L  FI  QG+TV+EFYE VR A E D      + ++IL ATADFD+F+LMMR+TKE+
Sbjct:   22 PSEAKVHA----GLEKAGAKDDPNNFDPENNDLVNKVISFFFDNDEFAHTFEAFAEHHCHAFDLDSDEMKLEYTDIYNEFLALFEQKLEAFIRSQGATVQEFYELVRRAYEIDRQSGTVLCSEILVATADFDVFVLMMRQTKEA 161          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A7S2V171_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V171_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.270e-29
Identity = 60/135 (44.44%), Postives = 88/135 (65.19%), Query Frame = 2
Query:   95 SGTKQEGKESAVRKNDDVDLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKESMRDA 499
            S +K   K    + +D   +V+ V  +FYE+++FA  FE FV  + H +DL   E RLE+T+LYQ +Q L+E  L  FI +QGS+V EFY++++ AT++D     ++F QIL AT DFDIFMLMM+E +E   +A
Sbjct:   16 SESKTGAKSIGAKDSDSRPIVEKVQQYFYEDDDFAKIFEDFVAEHAHIVDLDTEENRLEYTELYQQFQALYEKHLEAFIVEQGSSVMEFYQQLKKATDEDQTSAIALFGQILTATCDFDIFMLMMKEAREKEVEA 150          
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Match: A0A3F2RJK5_9STRA (Cilia- and flagella-associated protein 36 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJK5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.650e-29
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 2
Query:  149 DLVDAVSTFFYENEEFAGKFEAFVKANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKVRAATEKDPFGKESIFAQILAATADFDIFMLMMRETKES 487
            DLV+ V T+F++N+EFA  FE F + NCH  DL   E +LE+TD+Y  +  LFE  L  +I+ QGSTV EFYE VR A + D      + ++IL ATADFD+F+LMMR+TKE+
Sbjct:   53 DLVNKVITYFFDNDEFAHTFETFAEENCHAFDLDSEEMKLEYTDIYNEFLALFERKLEGYIKSQGSTVHEFYELVRQAYQTDRESGTVLCSEILVATADFDVFVLMMRQTKET 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig205.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1QFZ2_HETAK3.430e-3245.45Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
H3GGW1_PHYRM7.440e-3246.94Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A067CE96_SAPPC7.970e-3146.46Cilia- and flagella-associated protein 36 n=2 Tax=... [more]
A0A225W6K4_9STRA3.340e-3047.73Cilia- and flagella-associated protein 36 n=2 Tax=... [more]
A0A6G0XJ32_9STRA5.520e-3042.18Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A1V9YAT2_9STRA9.120e-3043.79Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
G4ZTS8_PHYSP1.160e-2943.13Cilia- and flagella-associated protein 36 n=3 Tax=... [more]
A0A2P4Y0G2_9STRA1.190e-2947.22Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A7S2V171_9STRA2.270e-2944.44Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A3F2RJK5_9STRA2.650e-2951.33Cilia- and flagella-associated protein 36 n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig205contigP-wetherbeei_contig205:2508..3467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra75103
PFAMsARL2_Bind_BART
Model size589
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.31e-33
EggNOG OGs2C07X@1|root,2S28G@2759|Eukaryota,3QFGY@4776|Peronosporales
Ec32 ortholog descriptionADP-ribosylation factor-like 2-binding protein, domain
Ec32 orthologEc-00_011420.1
DescriptionThe ARF-like 2 binding protein BART
Cds size480
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.190469-UTR-P-wetherbeei_contig205:2507..25431683186201.190469-UTR-P-wetherbeei_contig205:2507..2543Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig205 2508..2543 -
1683186201.22382-UTR-P-wetherbeei_contig205:3394..34671683186201.22382-UTR-P-wetherbeei_contig205:3394..3467Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig205 3395..3467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186201.1988113-CDS-P-wetherbeei_contig205:2543..27261683186201.1988113-CDS-P-wetherbeei_contig205:2543..2726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig205 2544..2726 -
1683186201.2062843-CDS-P-wetherbeei_contig205:2901..30011683186201.2062843-CDS-P-wetherbeei_contig205:2901..3001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig205 2902..3001 -
1683186201.2138326-CDS-P-wetherbeei_contig205:3197..33941683186201.2138326-CDS-P-wetherbeei_contig205:3197..3394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig205 3198..3394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig205.1.1prot_P-wetherbeei_contig205.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig205 2544..3394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig205.1.1

>prot_P-wetherbeei_contig205.1.1 ID=prot_P-wetherbeei_contig205.1.1|Name=mRNA_P-wetherbeei_contig205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MPSESKFSGTKQEGKESAVRKNDDVDLVDAVSTFFYENEEFAGKFEAFVK
ANCHKIDLKETEYRLEHTDLYQTYQRLFEDSLTEFIEDQGSTVREFYEKV
RAATEKDPFGKESIFAQILAATADFDIFMLMMRETKESMRDACGADLEPL
EAAEPARRK*
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mRNA from alignment at P-wetherbeei_contig205:2508..3467-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig205.1.1 ID=mRNA_P-wetherbeei_contig205.1.1|Name=mRNA_P-wetherbeei_contig205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig205:2508..3467- (Phaeothamnion wetherbeei SAG_119_79)
CGGTTTTCGAGGTTTGAGTTGCTCGACTTTCCCGCCCGCCACGAGCCTTA CCGGCCACCCGGACTATCAAGAGATGCCGTCGGAAAGCAAGTTCAGCGGC ACCAAACAGGAAGGGAAGGAATCAGCGGTACGAAAAAACGACGACGTGGA CCTCGTCGACGCCGTGTCGACGTTTTTTTACGAGAACGAAGAGTTCGCCG GGAAGTTCGAGGCATTTGTGAAGGCAAATTGCCACAAGATCGACTTAAAA GAGACCGAATACAGGCTAGAGTGAGTTGATCAAGAAGTCTCACTCCTTTC CTTTCGTATGAAATAAAGATGTGCGGATCCATGTGCTGCAGGTATAATTT CAAACTTTCTAGCCGCGACGATGATTATTCCAGGTCATCTTCCATTACCT CTCTCGGCTATTGCTACACCTCGTTGCCTCCTCTCCTATTCTTTCCTTGC GTCATCAACTACATAGGCATACGGATTTGTACCAGACGTATCAGCGGCTC TTTGAGGATTCTCTGACGGAATTCATTGAGGATCAGGGCTCCACGGTCAG AGAATTCTATGAAAAGGTGAACTTCGTTCAGGATCGCCGTCCAGCTCCAT TCTCATCGTAATACACGAGGTGCCTCGCACGATGGTGGTTCGAAGAAATC CAGCCTGTCTTACCATTGCTCACACAATTCGAAATCGTGCTGCATCGGCA ACGCCGCTCTGGCTGCTTTCGCCGCTGCTCGATTGCCTCAGGTTCGCGCC GCGACGGAAAAGGATCCCTTCGGGAAGGAGAGCATCTTCGCGCAAATCCT GGCGGCGACAGCGGACTTTGATATATTCATGCTGATGATGCGGGAAACGA AGGAGAGCATGCGGGACGCCTGCGGTGCAGATTTGGAGCCGCTCGAAGCT GCCGAGCCGGCACGAAGAAAATAGAATACTCAAAGCGCTAAGAGAAAATG AATGGAGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig205:2508..3467-

>mRNA_P-wetherbeei_contig205.1.1 ID=mRNA_P-wetherbeei_contig205.1.1|Name=mRNA_P-wetherbeei_contig205.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig205:2508..3467- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGGAAAGCAAGTTCAGCGGCACCAAACAGGAAGGGAAGGAATC
AGCGGTACGAAAAAACGACGACGTGGACCTCGTCGACGCCGTGTCGACGT
TTTTTTACGAGAACGAAGAGTTCGCCGGGAAGTTCGAGGCATTTGTGAAG
GCAAATTGCCACAAGATCGACTTAAAAGAGACCGAATACAGGCTAGAGCA
TACGGATTTGTACCAGACGTATCAGCGGCTCTTTGAGGATTCTCTGACGG
AATTCATTGAGGATCAGGGCTCCACGGTCAGAGAATTCTATGAAAAGGTT
CGCGCCGCGACGGAAAAGGATCCCTTCGGGAAGGAGAGCATCTTCGCGCA
AATCCTGGCGGCGACAGCGGACTTTGATATATTCATGCTGATGATGCGGG
AAACGAAGGAGAGCATGCGGGACGCCTGCGGTGCAGATTTGGAGCCGCTC
GAAGCTGCCGAGCCGGCACGAAGAAAATAG
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