mRNA_P-wetherbeei_contig20477.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20477.1.1
Unique NamemRNA_P-wetherbeei_contig20477.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: D7G3K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.390e-19
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   55 DEPFSPGQAIGEGLKGDLWKAKHPNVQILE-LEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            D+P+ PGQA+G G+K ++WK KHPN+ ILE +E+ P + L+S VRNVET G AF++ A R MR LL+ A    PNDD
Sbjct:  106 DDPYEPGQAVGVGIKAEMWKTKHPNLTILETIEDSPVLGLMSVVRNVETDGGAFLSAANRLMRQLLDFADMGFPNDD 182          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: T0R3D8_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R3D8_SAPDV)

HSP 1 Score: 79.7 bits (195), Expect = 1.000e-15
Identity = 38/95 (40.00%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 AALAAGSVTISFAVAAA-KDEPFSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            AA +  ++T++F+VA+  K+  +  G+ +G G+K +LWKAKH NV++L+LE       ++H+R+  ++GA F++ A++ +R +LEAA T+LPND+
Sbjct:    9 AAASIAAMTMAFSVASCQKERVYESGEVLGRGVKLELWKAKHKNVEVLDLESETIQTGMTHLRDYASSGAKFMHCADKLIRNVLEAALTQLPNDE 103          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: A0A024UJ43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJ43_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.640e-15
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   64 FSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDDGV 288
            +  GQ +G G+K +LWKAKH NV +L+LE       L+HVR+    GA FV+ A + +R +LE+A T+LPND+ V
Sbjct:   34 YESGQVLGRGVKLELWKAKHKNVDVLDLESETIQTGLTHVRDYHATGAKFVHVANKLLRNVLESALTQLPNDEDV 108          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: A0A1V9YD72_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YD72_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.030e-14
Identity = 32/77 (41.56%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   52 KDEPFSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            K+  +  G+ +G G+K +LWKA H NV++L+LE       ++H+R+  ++GA FV+ A++ +R +LEAA T+LPND+
Sbjct:   28 KERVYESGEVLGRGIKLELWKAAHKNVEVLDLESETVQTCMTHLRDYASSGAKFVHVADKLLRNVLEAALTQLPNDE 104          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: A0A485LC67_9STRA (Aste57867_18653 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LC67_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.670e-14
Identity = 32/73 (43.84%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   64 FSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            +  GQ +G G+K +LWKAKH NV++L+LE       ++HVR+  ++GA F++ A + +R +LE+A T+LPND+
Sbjct:   33 YESGQVLGRGVKLELWKAKHKNVEVLDLESETIQTGMTHVRDFNSSGAKFIHCANKLIRNVLESALTQLPNDE 105          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: W4G8Y1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8Y1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.790e-14
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   55 DEPFSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            D+ +  GQ +G G+K +LWKAKH NV +L+LE       L+ VR+    GA FV+ A + +R +LE+A T+LPND+
Sbjct:   33 DKIYESGQVLGRGVKLELWKAKHKNVDVLDLESETIQTGLTRVRDFNATGAKFVHVANKLLRNVLESALTQLPNDE 108          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: A0A1W0A2C5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2C5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.070e-14
Identity = 31/77 (40.26%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   52 KDEPFSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            K+  +  G+ +G G+K +LWKA H NV +L+LE       L+H+R+ + +GA FV+ A++ +R ++E+A T+LPND+
Sbjct:   24 KERIYESGEVLGHGVKLELWKANHKNVDVLDLENEAIQMGLTHIRDYKASGAKFVHCADKLLRTVIESALTQLPNDE 100          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: A0A6G0WIT7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIT7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.540e-14
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   64 FSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            +  GQ +G G+K +LWKA H NV +L+LE       L+H+R+  ++GA FV+ A + +R +LEAA T+LPND+
Sbjct:   34 YESGQVLGRGVKLELWKANHKNVDVLDLESETIQTGLTHIRDFNSSGAKFVHCANKLIRNVLEAALTQLPNDE 106          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: A0A7S1CHZ5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHZ5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.410e-12
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    4 ALAAGSVTISFAVAAAKDEP-----FSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDDGV 288
            A A G+ + + A   A+DE      + P +A+G+GL+G+ WKAKH N+ ILEL+  P   LL+  RN      AF  F  R + L LE A   LP +D V
Sbjct:   37 AAAIGAASTALAKGRARDEDAEGKVYEPCEAVGDGLRGEFWKAKHGNITILELDYEPLQVLLTRARNAACDSKAFNFFIHRLLSLTLEMALGALPTEDVV 136          
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Match: G4Z1L4_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1L4_PHYSP)

HSP 1 Score: 69.3 bits (168), Expect = 6.630e-12
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 AALAAGSVTISFAVAAAKDEPFSPGQAIGEGLKGDLWKAKHPNVQILELEEGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDD 282
            AAL    + +S   A A+   ++ G+A+G G++ +LWKA+H NV +L+LE       ++ +R+ E AGA F + A   +R  L+ A TELPND+
Sbjct:   15 AALLGAPILLSQQQARAEQRVYASGEALGRGVRLELWKAQHENVVVLDLESELIQLGMTRIRDYENAGAKFTHDANGVLRSTLDLALTELPNDE 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20477.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G3K6_ECTSI4.390e-1954.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
T0R3D8_SAPDV1.000e-1540.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024UJ43_9STRA5.640e-1546.67Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YD72_9STRA1.030e-1441.56Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485LC67_9STRA2.670e-1443.84Aste57867_18653 protein n=1 Tax=Aphanomyces stella... [more]
W4G8Y1_9STRA2.790e-1444.74Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1W0A2C5_9STRA5.070e-1440.26Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0WIT7_9STRA5.540e-1445.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1CHZ5_9STRA1.410e-1240.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
G4Z1L4_PHYSP6.630e-1238.30Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20477contigP-wetherbeei_contig20477:262..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G3K6
PFAMsUPRTase
Model size303
Max annot lvl2759|Eukaryota
KEGG rclassRC00063
KEGG koko:K00761
KEGG ReactionR00966
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categorysignal peptide
Exons2
Evalue7.19e-20
EggNOG OGsCOG0572@1|root,KOG4203@2759|Eukaryota
Ec32 ortholog descriptionPhosphoribosyltransferase-like
Ec32 orthologEc-19_005020.1
EC2.4.2.9
DescriptionUMP salvage
Cds size303
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186200.8006136-CDS-P-wetherbeei_contig20477:261..4261683186200.8006136-CDS-P-wetherbeei_contig20477:261..426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20477 262..426 +
1683186200.80956-CDS-P-wetherbeei_contig20477:726..8641683186200.80956-CDS-P-wetherbeei_contig20477:726..864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20477 727..864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20477.1.1prot_P-wetherbeei_contig20477.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20477 262..864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20477.1.1

>prot_P-wetherbeei_contig20477.1.1 ID=prot_P-wetherbeei_contig20477.1.1|Name=mRNA_P-wetherbeei_contig20477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
AALAAGSVTISFAVAAAKDEPFSPGQAIGEGLKGDLWKAKHPNVQILELE
EGPFMPLLSHVRNVETAGAAFVNFAERAMRLLLEAAFTELPNDDGVRGER
*
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mRNA from alignment at P-wetherbeei_contig20477:262..864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20477.1.1 ID=mRNA_P-wetherbeei_contig20477.1.1|Name=mRNA_P-wetherbeei_contig20477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig20477:262..864+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGCACTGGCGGCAGGCAGCGTGACCATTTCTTTCGCCGTCGCCGCTGC AAAAGACGAGCCGTTCTCACCGGGTCAGGCCATCGGGGAAGGATTGAAAG GAGATTTGTGGAAGGCGAAGCACCCCAACGTCCAGATTCTCGAGCTGGAA GAGGGCCCTTTTATGGTAGGTAGGCAAGCAGTTCCTCGTCTCTTGCTATC ATGAAATCAAACTTCGCAAAGAAGGAATGAAACAGAGTTTGCAACATATT GAAACTTCCCACAGCAACCACCCTGCGCACACTTCTCTCGCAATAATTGG CACCCCTGATGTTAAACTGCGGTGCCACTAACTCCAAGTGCAAATATATT TGAAAACAGCAATCGTTTAACAGTAATTTACCTCGCTCCCTCTTCACTCC CTTCCAAATGCGAAACTGGCGGCCGGCGCAAATTAAACGGAATCGAAACG GAACGGGGATGGCAGCCGCTGCTTTCTCACGTCCGCAACGTCGAGACGGC GGGCGCCGCCTTCGTAAACTTTGCGGAGCGAGCAATGCGGCTGCTGCTGG AAGCCGCCTTCACAGAACTGCCGAACGACGATGGGGTGAGAGGAGAAAGG TAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20477:262..864+

>mRNA_P-wetherbeei_contig20477.1.1 ID=mRNA_P-wetherbeei_contig20477.1.1|Name=mRNA_P-wetherbeei_contig20477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig20477:262..864+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGCACTGGCGGCAGGCAGCGTGACCATTTCTTTCGCCGTCGCCGCTGC
AAAAGACGAGCCGTTCTCACCGGGTCAGGCCATCGGGGAAGGATTGAAAG
GAGATTTGTGGAAGGCGAAGCACCCCAACGTCCAGATTCTCGAGCTGGAA
GAGGGCCCTTTTATGCCGCTGCTTTCTCACGTCCGCAACGTCGAGACGGC
GGGCGCCGCCTTCGTAAACTTTGCGGAGCGAGCAATGCGGCTGCTGCTGG
AAGCCGCCTTCACAGAACTGCCGAACGACGATGGGGTGAGAGGAGAAAGG
TAG
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