mRNA_P-wetherbeei_contig20437.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20437.1.1
Unique NamemRNA_P-wetherbeei_contig20437.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: D7FW08_ECTSI (Proteasome subunit alpha type n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW08_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 9.840e-54
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EY+ARFIARTQQRYTQRGGMRPFGVSS+L GFS+DG P IYQTDPAGTYSAWKANAIGG +S NMREFLEKNW  DMDE A  +LC KALLEVVDSG+K+ EI +++
Sbjct:  107 EYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGTPQIYQTDPAGTYSAWKANAIGGSNSNNMREFLEKNWANDMDEGAAKKLCMKALLEVVDSGAKNMEIAIVR 213
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: A0A835Z7L7_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L7_9STRA)

HSP 1 Score: 170 bits (430), Expect = 5.690e-51
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMAD--MDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EYMARFIARTQQ+YTQRGGMRPFGVS ML GF  DGQP +YQTDPAGT+SAWKANAIGGKSSKNMREFLEKN+  +  +DEAA V+LC K LLEVVDSG+K+ EI +I+
Sbjct:  107 EYMARFIARTQQKYTQRGGMRPFGVSCMLAGFGTDGQPQLYQTDPAGTHSAWKANAIGGKSSKNMREFLEKNYPTEGGLDEAAAVKLCIKTLLEVVDSGAKNMEICLIR 215
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: A0A7S2F6I3_9STRA (Proteasome subunit alpha type n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F6I3_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.290e-47
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EY+ARFIA+TQQRYTQRGG+RPFGVSS+L GF  DG P IYQ DP+GTY AWKANAIGG++ K MREFLEK W+ D++EA  ++L  KALLEVVDSGSK+ E+VV++
Sbjct:  119 EYIARFIAKTQQRYTQRGGVRPFGVSSILAGFHTDGSPSIYQIDPSGTYFAWKANAIGGRNFKPMREFLEKEWVPDLEEAQALKLTVKALLEVVDSGSKNMEVVVVR 225
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: A0A6S9E6K7_HETAK (Proteasome subunit alpha type n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E6K7_HETAK)

HSP 1 Score: 157 bits (398), Expect = 3.490e-46
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EY+ARF+ARTQQ+YTQRGGMRPFGVS ML G   DG P +YQTDPAGTYSAWK N IGGK+SK+M+EFLEKNW  DMD  A  +L  K LLEVVDSG+K+ E+ V++
Sbjct:  105 EYVARFVARTQQKYTQRGGMRPFGVSVMLAGHGVDGAPQLYQTDPAGTYSAWKGNCIGGKNSKSMQEFLEKNWEEDMDAPAAKKLAIKCLLEVVDSGAKNMEVCVVR 211
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: A0A7S2RQS1_9STRA (Proteasome subunit alpha type n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQS1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.960e-45
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EY+ARFIARTQQRYTQRGG+RPFGVSS+L GF+ DG P IYQ DP+GTY  WKANAIGG++ K MREFLEK W   + +A   +L  KALLEVVDSGSK+ E+VVI+
Sbjct:  106 EYIARFIARTQQRYTQRGGVRPFGVSSILAGFNTDGAPQIYQIDPSGTYFGWKANAIGGRNFKGMREFLEKEWQEGLSQAEATKLTVKALLEVVDSGSKNMELVVIR 212
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: F0YFT0_AURAN (Proteasome subunit alpha type n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFT0_AURAN)

HSP 1 Score: 154 bits (389), Expect = 9.420e-45
Identity = 73/108 (67.59%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGF-SKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EYMARF+ARTQQRYTQRGG+RPFGVSS+L GF S  G+PL+YQ DP+GTY +WKANAIGG++SK+MRE+LEK W A + +     LC K LLEVVDSG+K+ E+VV+K
Sbjct:  107 EYMARFLARTQQRYTQRGGVRPFGVSSILAGFDSASGKPLMYQIDPSGTYFSWKANAIGGRNSKSMREYLEKEWSAGLQDDEATELCVKTLLEVVDSGAKNMEVVVLK 214
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: A0A7S2L089_9STRA (Proteasome subunit alpha type n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L089_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.210e-44
Identity = 65/106 (61.32%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVI 318
            +YMAR++ARTQQ YTQRGG+RPFG+++++ GF  DG+P++YQTDPAGT+S+WKA  +GG++SK +REFLE+NW AD+++A  V L  KALLEVVDSG+K+ E+ V+
Sbjct:  105 DYMARYVARTQQSYTQRGGVRPFGIATLMAGFDSDGKPVLYQTDPAGTHSSWKAQVVGGRNSKTLREFLEQNWTADLNQADAVNLAVKALLEVVDSGAKNMEVCVV 210
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: A0A7R9UBV5_9STRA (Proteasome subunit alpha type n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBV5_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.530e-44
Identity = 70/107 (65.42%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EY++RF+A+TQQRYTQRGG+RPFGVS++L GFS DG P ++QTDPAGTYS WKANAIGGK+SKNMRE LE NW A + E   V+L  + LLEVVDSGS +  +V+++
Sbjct:  124 EYVSRFLAKTQQRYTQRGGVRPFGVSALLAGFSPDGSPQLFQTDPAGTYSEWKANAIGGKNSKNMRELLENNWTAGLSEEEAVKLTVRTLLEVVDSGSSNMGLVIVR 230
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: A0A7S1FT14_9STRA (Proteasome subunit alpha type n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FT14_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.640e-43
Identity = 69/103 (66.99%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEI 309
            EY+AR+IARTQQ+YTQRGG+RPFG++++L GFS+ G P +YQTDPAGTYS+WKANA+GG+++K+MREFLEKN    M E   V+L  KALLEVVDSG+K+ EI
Sbjct:  105 EYIARYIARTQQKYTQRGGVRPFGITTLLAGFSQSGSPCLYQTDPAGTYSSWKANAVGGRNAKSMREFLEKNCDDSMSETDAVKLAVKALLEVVDSGAKNMEI 207
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BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Match: B8BR42_THAPS (Proteasome subunit alpha type n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BR42_THAPS)

HSP 1 Score: 150 bits (380), Expect = 1.730e-43
Identity = 66/107 (61.68%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 EYMARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAWKANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTEIVVIK 321
            EY+AR+IARTQQ+YTQRGG+RPFG++++L GFS++G P++YQTDPAGT+S WKA  IGG+++K++REFLEKNW   ++E   VR+  +ALLEVVDSG+K+ EI V++
Sbjct:  105 EYLARYIARTQQKYTQRGGVRPFGIATLLAGFSEEGSPVLYQTDPAGTHSEWKAQVIGGRNAKSLREFLEKNWEEGLEEDKAVRMSVQALLEVVDSGAKNMEICVVR 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20437.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW08_ECTSI9.840e-5478.50Proteasome subunit alpha type n=2 Tax=Ectocarpus T... [more]
A0A835Z7L7_9STRA5.690e-5177.06Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A7S2F6I3_9STRA9.290e-4770.09Proteasome subunit alpha type n=2 Tax=Dictyocha sp... [more]
A0A6S9E6K7_HETAK3.490e-4669.16Proteasome subunit alpha type n=2 Tax=Heterosigma ... [more]
A0A7S2RQS1_9STRA4.960e-4569.16Proteasome subunit alpha type n=1 Tax=Rhizochromul... [more]
F0YFT0_AURAN9.420e-4567.59Proteasome subunit alpha type n=1 Tax=Aureococcus ... [more]
A0A7S2L089_9STRA2.210e-4461.32Proteasome subunit alpha type n=1 Tax=Leptocylindr... [more]
A0A7R9UBV5_9STRA2.530e-4465.42Proteasome subunit alpha type n=1 Tax=Pinguiococcu... [more]
A0A7S1FT14_9STRA1.640e-4366.99Proteasome subunit alpha type n=1 Tax=Corethron hy... [more]
B8BR42_THAPS1.730e-4361.68Proteasome subunit alpha type n=2 Tax=Thalassiosir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20437contigP-wetherbeei_contig20437:217..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FW08
Preferred namePSMA7
PFAMsProteasome,Proteasome_A_N
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K01191,ko:K02731
KEGG Pathwayko00511,ko03050,map00511,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorymitochondrion
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005819,GO:0005829,GO:0005839,GO:0005840,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009524,GO:0009536,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030071,GO:0030163,GO:0031090,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0036211,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044464,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0098588,GO:0098794,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:1990904,GO:2001252
Exons2
Evalue9.75e-53
EggNOG OGsCOG0638@1|root,KOG0183@2759|Eukaryota
Ec32 ortholog descriptionproteasome subunit alpha type 7
Ec32 orthologEc-01_002900.1
EC3.2.1.24,3.4.25.1
Descriptionthreonine-type endopeptidase activity
Cds size315
COG categoryO
CAZyGH38
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.747477-UTR-P-wetherbeei_contig20437:216..2221683186199.747477-UTR-P-wetherbeei_contig20437:216..222Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20437 217..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.7635682-CDS-P-wetherbeei_contig20437:222..3751683186199.7635682-CDS-P-wetherbeei_contig20437:222..375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20437 223..375 +
1683186199.7733622-CDS-P-wetherbeei_contig20437:576..7381683186199.7733622-CDS-P-wetherbeei_contig20437:576..738Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20437 577..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20437.1.1prot_P-wetherbeei_contig20437.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20437 223..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20437.1.1

>prot_P-wetherbeei_contig20437.1.1 ID=prot_P-wetherbeei_contig20437.1.1|Name=mRNA_P-wetherbeei_contig20437.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MARFIARTQQRYTQRGGMRPFGVSSMLCGFSKDGQPLIYQTDPAGTYSAW
KANAIGGKSSKNMREFLEKNWMADMDEAATVRLCTKALLEVVDSGSKSTE
IVVIK
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mRNA from alignment at P-wetherbeei_contig20437:217..738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20437.1.1 ID=mRNA_P-wetherbeei_contig20437.1.1|Name=mRNA_P-wetherbeei_contig20437.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig20437:217..738+ (Phaeothamnion wetherbeei SAG_119_79)
GAGTACATGGCGCGGTTCATCGCGCGGACGCAGCAGCGCTACACGCAGCG
GGGCGGGATGCGGCCGTTTGGCGTGTCGTCGATGCTGTGCGGCTTCTCCA
AGGACGGGCAGCCCCTCATCTACCAGACCGATCCTGCCGGAACCTACTCC
GCATGGAAGGTCAGTCAGTTTTTCCCCGCGTGCGCGCTAAAGTGGATGCA
CTCCGAGGAAAAAGAAGGGCCGTTCTCTGTTTGCTGCTTTCACTGCTTGC
TGCTTTCACCGCTCAACCTCCTGTGTGTGTGGTCGTCATGGTCCATGTTC
ACCAAAAGGGCTGCCCTTCTCTGCCCTGCTCTGAGCTGCCCGACCGACCT
GTGTCGCCAGGCGAACGCCATCGGGGGCAAGAGCTCGAAGAACATGCGCG
AGTTTCTCGAGAAGAACTGGATGGCGGACATGGATGAGGCGGCAACGGTG
CGGCTGTGCACCAAGGCGCTGCTCGAGGTCGTCGACTCGGGCTCCAAGAG
CACCGAGATCGTCGTAATCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20437:217..738+

>mRNA_P-wetherbeei_contig20437.1.1 ID=mRNA_P-wetherbeei_contig20437.1.1|Name=mRNA_P-wetherbeei_contig20437.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig20437:217..738+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGGTTCATCGCGCGGACGCAGCAGCGCTACACGCAGCGGGGCGG
GATGCGGCCGTTTGGCGTGTCGTCGATGCTGTGCGGCTTCTCCAAGGACG
GGCAGCCCCTCATCTACCAGACCGATCCTGCCGGAACCTACTCCGCATGG
AAGGCGAACGCCATCGGGGGCAAGAGCTCGAAGAACATGCGCGAGTTTCT
CGAGAAGAACTGGATGGCGGACATGGATGAGGCGGCAACGGTGCGGCTGT
GCACCAAGGCGCTGCTCGAGGTCGTCGACTCGGGCTCCAAGAGCACCGAG
ATCGTCGTAATCAAG
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