mRNA_P-wetherbeei_contig2042.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2042.1.1
Unique NamemRNA_P-wetherbeei_contig2042.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2042.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2042contigP-wetherbeei_contig2042:790..2404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1525
Hectar predicted targeting categoryother localisation
Exons2
Cds size1488
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.2163782-CDS-P-wetherbeei_contig2042:789..21671683186199.2163782-CDS-P-wetherbeei_contig2042:789..2167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2042 790..2167 -
1683186199.2251577-CDS-P-wetherbeei_contig2042:2258..23681683186199.2251577-CDS-P-wetherbeei_contig2042:2258..2368Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2042 2259..2368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.2331998-UTR-P-wetherbeei_contig2042:2368..24041683186199.2331998-UTR-P-wetherbeei_contig2042:2368..2404Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2042 2369..2404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2042.1.1prot_P-wetherbeei_contig2042.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2042 790..2368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2042.1.1

>prot_P-wetherbeei_contig2042.1.1 ID=prot_P-wetherbeei_contig2042.1.1|Name=mRNA_P-wetherbeei_contig2042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=496bp
MAALLEQWRRSFISTAKEATKNRSASSKTPPSNVDDNLFVEAEIALEGLE
DGRRPSSPKYYNWDSPLPPSGYQVKSPLVTPRRAWRPRSVPNTGNTSDGA
LAQPWDNLRTPRPARVVHRGKLAARPKGAKGTGNDEAPASSNCILASAPI
ASCGRDAAMDSSGGDANLRSSSLPTERQCVTLGRMTEPPELAIVVCNALA
EAVSLQTRTNTEEWFRWNALRAELTADGGQLLRRLRAYDLLTAPKESRLA
LSRLVCDPRSRDTAAIASLSGQATAAAVLLQWARAQVRTWRRHWQHHKDS
IFQAAEECVEADSGGHQPVKGRGAAWSTADGDPPAATVGDSVHASPQLCV
PPAASSWRSVAPQDGGSGGSTSKNHACCCRGESKFWSTRTGSAKNGSSSQ
SGESSGEGCLNGEAAGDGSHLNIEAVVATSLPHPPRRQAELPPHAFFPRH
LLFSPQGAFRRPETDMTIPVPEPSGDQTPQSSGAAAAEWYKSEPSS
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mRNA from alignment at P-wetherbeei_contig2042:790..2404-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2042.1.1 ID=mRNA_P-wetherbeei_contig2042.1.1|Name=mRNA_P-wetherbeei_contig2042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1615bp|location=Sequence derived from alignment at P-wetherbeei_contig2042:790..2404- (Phaeothamnion wetherbeei SAG_119_79)
AGAAACTGTAGTAACTGCCGTCGACGTGACTCCTGAATGGCGGCCCTGCT
GGAGCAATGGCGACGATCTTTCATCAGCACCGCGAAAGAAGCTACCAAAA
ACCGTTCGGCGTCCTCCAAGACGCCCCCTTCAAATGTGGACGACAAGTAA
GTCTCGGTGATCAAACCATCGTGCATATTGAGCAAGGACACTCACCACCG
CCCAACACCCTTTTTATCATCGTATCCTACTTTACAGTTTATTTGTCGAG
GCCGAAATTGCCCTTGAAGGTCTTGAAGACGGACGGCGACCTTCCTCACC
GAAATACTACAACTGGGACAGCCCTCTGCCGCCTTCGGGCTACCAAGTCA
AGAGTCCTTTGGTGACACCGCGCCGAGCATGGCGCCCTCGGTCCGTGCCG
AACACGGGAAACACGTCTGATGGCGCTCTGGCACAGCCATGGGACAACCT
TAGAACCCCTCGACCGGCGAGGGTTGTGCACCGAGGAAAGCTGGCTGCAC
GTCCGAAAGGTGCCAAAGGAACTGGAAACGACGAAGCTCCTGCCAGCTCG
AATTGCATTCTGGCATCTGCGCCCATCGCGTCCTGCGGACGGGACGCCGC
CATGGACAGCAGCGGAGGCGACGCCAACCTTCGTTCTTCGTCTCTCCCCA
CGGAGCGTCAATGCGTGACACTTGGTCGTATGACGGAACCGCCAGAGCTG
GCAATCGTCGTGTGCAATGCGCTGGCGGAGGCTGTTTCATTGCAGACAAG
GACAAACACCGAAGAGTGGTTTCGATGGAACGCCCTGAGAGCAGAGCTCA
CGGCTGACGGCGGCCAGCTCTTGCGCCGGCTGCGGGCTTACGACTTATTG
ACGGCTCCGAAAGAGAGCAGGCTGGCGCTCAGCCGCCTGGTTTGTGATCC
ACGGAGCCGAGACACCGCCGCCATCGCCAGCCTCAGCGGCCAAGCGACCG
CCGCCGCGGTCCTTCTGCAGTGGGCACGGGCACAGGTCCGGACCTGGCGG
CGCCATTGGCAGCATCACAAGGATAGCATTTTCCAAGCCGCCGAGGAATG
TGTTGAAGCAGACAGTGGCGGCCACCAGCCTGTCAAGGGGAGGGGTGCGG
CCTGGAGTACGGCAGACGGCGATCCTCCAGCGGCCACCGTTGGCGACAGT
GTACACGCTTCGCCGCAGCTGTGTGTGCCGCCGGCTGCCTCATCCTGGCG
GAGCGTGGCGCCGCAGGATGGCGGCAGCGGTGGGAGTACCAGCAAAAACC
ACGCCTGCTGTTGCCGGGGCGAATCAAAGTTCTGGAGCACTCGTACTGGC
TCTGCAAAAAACGGTTCCAGCAGCCAAAGCGGCGAAAGCAGCGGAGAGGG
CTGCTTGAATGGTGAGGCCGCCGGCGACGGCAGCCATTTAAACATCGAGG
CGGTGGTGGCGACATCGCTGCCGCATCCGCCGCGTCGGCAGGCAGAACTG
CCGCCGCATGCGTTCTTTCCTCGGCACCTGCTCTTCAGCCCGCAGGGAGC
CTTCCGACGCCCGGAGACGGATATGACCATTCCAGTACCGGAGCCTAGTG
GCGACCAAACTCCACAATCGAGCGGGGCGGCGGCGGCAGAATGGTATAAA
TCCGAACCATCTTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2042:790..2404-

>mRNA_P-wetherbeei_contig2042.1.1 ID=mRNA_P-wetherbeei_contig2042.1.1|Name=mRNA_P-wetherbeei_contig2042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1488bp|location=Sequence derived from alignment at P-wetherbeei_contig2042:790..2404- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCCTGCTGGAGCAATGGCGACGATCTTTCATCAGCACCGCGAA
AGAAGCTACCAAAAACCGTTCGGCGTCCTCCAAGACGCCCCCTTCAAATG
TGGACGACAATTTATTTGTCGAGGCCGAAATTGCCCTTGAAGGTCTTGAA
GACGGACGGCGACCTTCCTCACCGAAATACTACAACTGGGACAGCCCTCT
GCCGCCTTCGGGCTACCAAGTCAAGAGTCCTTTGGTGACACCGCGCCGAG
CATGGCGCCCTCGGTCCGTGCCGAACACGGGAAACACGTCTGATGGCGCT
CTGGCACAGCCATGGGACAACCTTAGAACCCCTCGACCGGCGAGGGTTGT
GCACCGAGGAAAGCTGGCTGCACGTCCGAAAGGTGCCAAAGGAACTGGAA
ACGACGAAGCTCCTGCCAGCTCGAATTGCATTCTGGCATCTGCGCCCATC
GCGTCCTGCGGACGGGACGCCGCCATGGACAGCAGCGGAGGCGACGCCAA
CCTTCGTTCTTCGTCTCTCCCCACGGAGCGTCAATGCGTGACACTTGGTC
GTATGACGGAACCGCCAGAGCTGGCAATCGTCGTGTGCAATGCGCTGGCG
GAGGCTGTTTCATTGCAGACAAGGACAAACACCGAAGAGTGGTTTCGATG
GAACGCCCTGAGAGCAGAGCTCACGGCTGACGGCGGCCAGCTCTTGCGCC
GGCTGCGGGCTTACGACTTATTGACGGCTCCGAAAGAGAGCAGGCTGGCG
CTCAGCCGCCTGGTTTGTGATCCACGGAGCCGAGACACCGCCGCCATCGC
CAGCCTCAGCGGCCAAGCGACCGCCGCCGCGGTCCTTCTGCAGTGGGCAC
GGGCACAGGTCCGGACCTGGCGGCGCCATTGGCAGCATCACAAGGATAGC
ATTTTCCAAGCCGCCGAGGAATGTGTTGAAGCAGACAGTGGCGGCCACCA
GCCTGTCAAGGGGAGGGGTGCGGCCTGGAGTACGGCAGACGGCGATCCTC
CAGCGGCCACCGTTGGCGACAGTGTACACGCTTCGCCGCAGCTGTGTGTG
CCGCCGGCTGCCTCATCCTGGCGGAGCGTGGCGCCGCAGGATGGCGGCAG
CGGTGGGAGTACCAGCAAAAACCACGCCTGCTGTTGCCGGGGCGAATCAA
AGTTCTGGAGCACTCGTACTGGCTCTGCAAAAAACGGTTCCAGCAGCCAA
AGCGGCGAAAGCAGCGGAGAGGGCTGCTTGAATGGTGAGGCCGCCGGCGA
CGGCAGCCATTTAAACATCGAGGCGGTGGTGGCGACATCGCTGCCGCATC
CGCCGCGTCGGCAGGCAGAACTGCCGCCGCATGCGTTCTTTCCTCGGCAC
CTGCTCTTCAGCCCGCAGGGAGCCTTCCGACGCCCGGAGACGGATATGAC
CATTCCAGTACCGGAGCCTAGTGGCGACCAAACTCCACAATCGAGCGGGG
CGGCGGCGGCAGAATGGTATAAATCCGAACCATCTTCG
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