mRNA_P-wetherbeei_contig20419.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A6I3KRR7_9HYPH (UTRA domain-containing protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KRR7_9HYPH) HSP 1 Score: 135 bits (339), Expect = 1.410e-36 Identity = 68/144 (47.22%), Postives = 94/144 (65.28%), Query Frame = 1
Query: 37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
+TR LYLQ++D +Q IA+G W +AI +EI+L+ LG+S GTVRKALD +ESE L+ R+QGRGTFV DQ+S H RFSN+R G R+TG V++ AS+ E R+L+LR G+ +F R R H+ M E + +
Sbjct: 8 STRPLYLQVKDMLIQRIAAGAWKPGAAIPNEIELSRELGISVGTVRKALDEMESERLISRRQGRGTFVIDQTSNEHAVRFSNIRDANGIRITGEVESCSVAAAAASDVESRRLQLRTGEPIFHIHRVRTHNDAPLMVEDATVPQ 151
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A7C2QY10_9HYPH (GntR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QY10_9HYPH) HSP 1 Score: 135 bits (340), Expect = 1.710e-36 Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 1
Query: 37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAI 462
+ R LYLQ+RD + IA GEW SAI +E DLA GVS GT+RKALD +E+E L+ R+QGRGTFV DQSS+ +RF+NLR +G RV G + E AS E +L+LR GD+V+R R RQH+ + F+ E +A+
Sbjct: 29 SNRPLYLQLRDALAERIAQGEWKPGSAIPNESDLAREFGVSAGTMRKALDLMEAERLLTRRQGRGTFVNDQSSDELAARFNNLRGADGSRVNGEIKAMEIAEAAASEAECARLRLRAGDRVYRIARLRQHNGQVFLAEDVAL 170
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: UPI0019C090F4 (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019C090F4) HSP 1 Score: 131 bits (329), Expect = 4.460e-35 Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
+TR LYLQ++D +Q IASG W +AI +EI+L+ LG+S GTVRKALD +E E L+ R+QGRGTFV DQ+S RFS++R +G R++G +T A+ E+R L LR G+QVFR +R R H+ M E + +
Sbjct: 8 STRPLYLQVKDMLIQRIASGAWKPGAAIPNEIELSRELGISVGTVRKALDEMEGERLISRRQGRGTFVIDQTSNEQAVRFSSIRDPDGIRISGETETCSIAAATANEAEVRHLDLRNGEQVFRLRRVRAHNRAPLMVEESTVPQ 151
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A6I0EPB0_HYPSQ (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EPB0_HYPSQ) HSP 1 Score: 129 bits (323), Expect = 3.540e-34 Identity = 68/146 (46.58%), Postives = 95/146 (65.07%), Query Frame = 1
Query: 37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRL--EPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
+TR LYLQ++D +Q IA+G W +AI +EI+L+ LG+S GTVRKALD +ESE L+ R+QGRGTFV DQ+S + RFSN+R +G R+ G DT C + A+ E R+L+LR G+ +FR R R H+ M E + +
Sbjct: 8 STRPLYLQVKDMLIQRIAAGAWKPGAAIPNEIELSRELGISVGTVRKALDEMESERLISRRQGRGTFVIDQTSNEYAVRFSNIRDPDGIRIAG--DTESCTVVAAAANETEARRLQLRSGEPIFRIHRVRTHNDVPLMVEESTVPQ 151
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A839PNK5_9HYPH (GntR family transcriptional regulator n=1 Tax=Mesorhizobium sp. RMAD-H1 TaxID=2587065 RepID=A0A839PNK5_9HYPH) HSP 1 Score: 126 bits (316), Expect = 5.470e-33 Identity = 68/154 (44.16%), Postives = 94/154 (61.04%), Query Frame = 1
Query: 10 SSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISER 471
+++LP + R LYLQ+RD Q I SGEW +AI +E DLA GVS GT+RKALD E+E L+ R+QGRGTFV DQSSE + +R+SN+R +G R+ G V+ S E +L+LR D+V +R + R +M E + +S R
Sbjct: 11 NNELPTSRFSNRPLYLQVRDAIAQRIVSGEWQPRTAIPNETDLAREFGVSPGTMRKALDLAEAERLLTRRQGRGTFVNDQSSEEYAARYSNIRSRDGKRMDGEVEVLSVYETTVSESEGMRLRLRARDRVHHIRRVWMENGRPYMLEDVVLSAR 164
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: UPI000931D7A3 (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI000931D7A3) HSP 1 Score: 124 bits (312), Expect = 1.580e-32 Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
+TR LYLQ++D VQ IA+G W +AI +EI+L+ LG+S GTVRKALD +E E L+ R+QGRGTFV DQ+S H RF N+R G R+ G + + L A+ E L+LR G+ ++R R R H+ M E + +
Sbjct: 8 STRPLYLQVKDMLVQRIAAGAWKPGAAIPNEIELSRELGISVGTVRKALDEMEHERLISRRQGRGTFVIDQTSNEHAVRFCNIRDPNGIRINGDIASSTIVLAAANESEAHHLQLRTGEPIYRIHRIRAHNGTPLMVEESVVPQ 151
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: UPI0009300A76 (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009300A76) HSP 1 Score: 124 bits (311), Expect = 2.060e-32 Identity = 61/146 (41.78%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 28 LSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAIS 465
+ L + LY Q+ + + LIA G W I +EI+LA LGVSTGT+RKALD LE+ L++R+QGRGTF+ DQ+ A+ RF LR+ +G + + +T E + AS DE R+L L + D+V R R + H+ ++YE ++I+
Sbjct: 1 MQLNRQPLYCQVANELIGLIAKGAWKPGQVIPNEIELARKLGVSTGTMRKALDKLEASHLIVRRQGRGTFILDQTGIANRQRFDLLRLDDGSSIQAISETLEEGIANASKDECRELALEQSDKVLRATRVKSHNGNPYVYEDISIA 146
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A135HP19_9HYPH (HTH gntR-type domain-containing protein n=1 Tax=Paramesorhizobium deserti TaxID=1494590 RepID=A0A135HP19_9HYPH) HSP 1 Score: 123 bits (308), Expect = 8.580e-32 Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 1
Query: 10 SSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISER 471
S++LP + R LYLQ+RD Q +A+GEW +AI +E +LA GVS GT+RKALD E+E LV R+QGRGTFV DQ+SE + +R+S LR +G R+ G V+ E +L+LR D+V + +R ++ + +M E + +S R
Sbjct: 11 SNELPTSRFSNRPLYLQVRDAIAQKVANGEWKPRTAIPNETELAREFGVSPGTMRKALDLAETERLVTRRQGRGTFVNDQTSEEYATRYSKLRSRDGRRMDGDVEVLSVHETTVGESEGMRLRLRARDRVHQIRRVWSNNGKPYMVEDVVLSAR 164
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A2S9IQP2_9HYPH (GntR family transcriptional regulator n=1 Tax=Phyllobacterium phragmitis TaxID=2670329 RepID=A0A2S9IQP2_9HYPH) HSP 1 Score: 120 bits (302), Expect = 6.750e-31 Identity = 66/152 (43.42%), Postives = 94/152 (61.84%), Query Frame = 1
Query: 10 SSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAIS 465
+++LP + R LYLQ+RD Q IA+GEW +AI +E DLA GVS GT+RKALD E+E LV R+QGRGTFV DQSSE + +R+SN+R +G RV G V+ S + +L+LR ++V +R + + +M E + +S
Sbjct: 11 NNELPTSRFSNRPLYLQVRDAIAQRIATGEWKPHAAIPNETDLAREFGVSPGTMRKALDLAETERLVTRRQGRGTFVNDQSSEEYAARYSNIRSRDGKRVDGDVEVLGIYETTVSEADGMRLRLRARERVHHIQRLWSANGKPYMLEDVVLS 162
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A6N6T681_9HYPH (GntR family transcriptional regulator n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T681_9HYPH) HSP 1 Score: 119 bits (299), Expect = 1.560e-30 Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAI 462
+TR LYLQ+RD + IA GEW +AI +E DLA GVS+GT+RKALD +E E L+ R+QGRGTFV DQ+S+ ++RF+N+R +G RV V +E L A++ E +L L+ +QV R +R R R FM + ++
Sbjct: 13 STRPLYLQLRDALAERIAQGEWKPGAAIPNESDLAREFGVSSGTMRKALDLMEGEHLLTRRQGRGTFVNDQTSDELSARFNNIRGKDGQRVIAQVRINEISLGRANDLEASRLGLQVHEQVIRIRRLRLDKGRPFMVDETSM 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20419.1.1 >prot_P-wetherbeei_contig20419.1.1 ID=prot_P-wetherbeei_contig20419.1.1|Name=mRNA_P-wetherbeei_contig20419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp MTDSSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLback to top mRNA from alignment at P-wetherbeei_contig20419:754..1224+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20419.1.1 ID=mRNA_P-wetherbeei_contig20419.1.1|Name=mRNA_P-wetherbeei_contig20419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig20419:754..1224+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20419:754..1224+ >mRNA_P-wetherbeei_contig20419.1.1 ID=mRNA_P-wetherbeei_contig20419.1.1|Name=mRNA_P-wetherbeei_contig20419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig20419:754..1224+ (Phaeothamnion wetherbeei SAG_119_79)back to top |