mRNA_P-wetherbeei_contig20419.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20419.1.1
Unique NamemRNA_P-wetherbeei_contig20419.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A6I3KRR7_9HYPH (UTRA domain-containing protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KRR7_9HYPH)

HSP 1 Score: 135 bits (339), Expect = 1.410e-36
Identity = 68/144 (47.22%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
            +TR LYLQ++D  +Q IA+G W   +AI +EI+L+  LG+S GTVRKALD +ESE L+ R+QGRGTFV DQ+S  H  RFSN+R   G R+TG V++       AS+ E R+L+LR G+ +F   R R H+    M E   + +
Sbjct:    8 STRPLYLQVKDMLIQRIAAGAWKPGAAIPNEIELSRELGISVGTVRKALDEMESERLISRRQGRGTFVIDQTSNEHAVRFSNIRDANGIRITGEVESCSVAAAAASDVESRRLQLRTGEPIFHIHRVRTHNDAPLMVEDATVPQ 151          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A7C2QY10_9HYPH (GntR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QY10_9HYPH)

HSP 1 Score: 135 bits (340), Expect = 1.710e-36
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAI 462
            + R LYLQ+RD   + IA GEW   SAI +E DLA   GVS GT+RKALD +E+E L+ R+QGRGTFV DQSS+   +RF+NLR  +G RV G +   E     AS  E  +L+LR GD+V+R  R RQH+ + F+ E +A+
Sbjct:   29 SNRPLYLQLRDALAERIAQGEWKPGSAIPNESDLAREFGVSAGTMRKALDLMEAERLLTRRQGRGTFVNDQSSDELAARFNNLRGADGSRVNGEIKAMEIAEAAASEAECARLRLRAGDRVYRIARLRQHNGQVFLAEDVAL 170          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: UPI0019C090F4 (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019C090F4)

HSP 1 Score: 131 bits (329), Expect = 4.460e-35
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 1
Query:   37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
            +TR LYLQ++D  +Q IASG W   +AI +EI+L+  LG+S GTVRKALD +E E L+ R+QGRGTFV DQ+S     RFS++R  +G R++G  +T       A+  E+R L LR G+QVFR +R R H+    M E   + +
Sbjct:    8 STRPLYLQVKDMLIQRIASGAWKPGAAIPNEIELSRELGISVGTVRKALDEMEGERLISRRQGRGTFVIDQTSNEQAVRFSSIRDPDGIRISGETETCSIAAATANEAEVRHLDLRNGEQVFRLRRVRAHNRAPLMVEESTVPQ 151          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A6I0EPB0_HYPSQ (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EPB0_HYPSQ)

HSP 1 Score: 129 bits (323), Expect = 3.540e-34
Identity = 68/146 (46.58%), Postives = 95/146 (65.07%), Query Frame = 1
Query:   37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRL--EPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
            +TR LYLQ++D  +Q IA+G W   +AI +EI+L+  LG+S GTVRKALD +ESE L+ R+QGRGTFV DQ+S  +  RFSN+R  +G R+ G  DT  C +    A+  E R+L+LR G+ +FR  R R H+    M E   + +
Sbjct:    8 STRPLYLQVKDMLIQRIAAGAWKPGAAIPNEIELSRELGISVGTVRKALDEMESERLISRRQGRGTFVIDQTSNEYAVRFSNIRDPDGIRIAG--DTESCTVVAAAANETEARRLQLRSGEPIFRIHRVRTHNDVPLMVEESTVPQ 151          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A839PNK5_9HYPH (GntR family transcriptional regulator n=1 Tax=Mesorhizobium sp. RMAD-H1 TaxID=2587065 RepID=A0A839PNK5_9HYPH)

HSP 1 Score: 126 bits (316), Expect = 5.470e-33
Identity = 68/154 (44.16%), Postives = 94/154 (61.04%), Query Frame = 1
Query:   10 SSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISER 471
            +++LP    + R LYLQ+RD   Q I SGEW   +AI +E DLA   GVS GT+RKALD  E+E L+ R+QGRGTFV DQSSE + +R+SN+R  +G R+ G V+         S  E  +L+LR  D+V   +R    + R +M E + +S R
Sbjct:   11 NNELPTSRFSNRPLYLQVRDAIAQRIVSGEWQPRTAIPNETDLAREFGVSPGTMRKALDLAEAERLLTRRQGRGTFVNDQSSEEYAARYSNIRSRDGKRMDGEVEVLSVYETTVSESEGMRLRLRARDRVHHIRRVWMENGRPYMLEDVVLSAR 164          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: UPI000931D7A3 (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI000931D7A3)

HSP 1 Score: 124 bits (312), Expect = 1.580e-32
Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISE 468
            +TR LYLQ++D  VQ IA+G W   +AI +EI+L+  LG+S GTVRKALD +E E L+ R+QGRGTFV DQ+S  H  RF N+R   G R+ G + +    L  A+  E   L+LR G+ ++R  R R H+    M E   + +
Sbjct:    8 STRPLYLQVKDMLVQRIAAGAWKPGAAIPNEIELSRELGISVGTVRKALDEMEHERLISRRQGRGTFVIDQTSNEHAVRFCNIRDPNGIRINGDIASSTIVLAAANESEAHHLQLRTGEPIYRIHRIRAHNGTPLMVEESVVPQ 151          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: UPI0009300A76 (GntR family transcriptional regulator n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009300A76)

HSP 1 Score: 124 bits (311), Expect = 2.060e-32
Identity = 61/146 (41.78%), Postives = 92/146 (63.01%), Query Frame = 1
Query:   28 LSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAIS 465
            + L  + LY Q+ +  + LIA G W     I +EI+LA  LGVSTGT+RKALD LE+  L++R+QGRGTF+ DQ+  A+  RF  LR+ +G  +  + +T E  +  AS DE R+L L + D+V R  R + H+   ++YE ++I+
Sbjct:    1 MQLNRQPLYCQVANELIGLIAKGAWKPGQVIPNEIELARKLGVSTGTMRKALDKLEASHLIVRRQGRGTFILDQTGIANRQRFDLLRLDDGSSIQAISETLEEGIANASKDECRELALEQSDKVLRATRVKSHNGNPYVYEDISIA 146          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A135HP19_9HYPH (HTH gntR-type domain-containing protein n=1 Tax=Paramesorhizobium deserti TaxID=1494590 RepID=A0A135HP19_9HYPH)

HSP 1 Score: 123 bits (308), Expect = 8.580e-32
Identity = 65/154 (42.21%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   10 SSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAISER 471
            S++LP    + R LYLQ+RD   Q +A+GEW   +AI +E +LA   GVS GT+RKALD  E+E LV R+QGRGTFV DQ+SE + +R+S LR  +G R+ G V+            E  +L+LR  D+V + +R   ++ + +M E + +S R
Sbjct:   11 SNELPTSRFSNRPLYLQVRDAIAQKVANGEWKPRTAIPNETELAREFGVSPGTMRKALDLAETERLVTRRQGRGTFVNDQTSEEYATRYSKLRSRDGRRMDGDVEVLSVHETTVGESEGMRLRLRARDRVHQIRRVWSNNGKPYMVEDVVLSAR 164          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A2S9IQP2_9HYPH (GntR family transcriptional regulator n=1 Tax=Phyllobacterium phragmitis TaxID=2670329 RepID=A0A2S9IQP2_9HYPH)

HSP 1 Score: 120 bits (302), Expect = 6.750e-31
Identity = 66/152 (43.42%), Postives = 94/152 (61.84%), Query Frame = 1
Query:   10 SSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAIS 465
            +++LP    + R LYLQ+RD   Q IA+GEW   +AI +E DLA   GVS GT+RKALD  E+E LV R+QGRGTFV DQSSE + +R+SN+R  +G RV G V+         S  +  +L+LR  ++V   +R    + + +M E + +S
Sbjct:   11 NNELPTSRFSNRPLYLQVRDAIAQRIATGEWKPHAAIPNETDLAREFGVSPGTMRKALDLAETERLVTRRQGRGTFVNDQSSEEYAARYSNIRSRDGKRVDGDVEVLGIYETTVSEADGMRLRLRARERVHHIQRLWSANGKPYMLEDVVLS 162          
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Match: A0A6N6T681_9HYPH (GntR family transcriptional regulator n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T681_9HYPH)

HSP 1 Score: 119 bits (299), Expect = 1.560e-30
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   37 TTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSLGVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEGHRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYETLAI 462
            +TR LYLQ+RD   + IA GEW   +AI +E DLA   GVS+GT+RKALD +E E L+ R+QGRGTFV DQ+S+  ++RF+N+R  +G RV   V  +E  L  A++ E  +L L+  +QV R +R R    R FM +  ++
Sbjct:   13 STRPLYLQLRDALAERIAQGEWKPGAAIPNESDLAREFGVSSGTMRKALDLMEGEHLLTRRQGRGTFVNDQTSDELSARFNNIRGKDGQRVIAQVRINEISLGRANDLEASRLGLQVHEQVIRIRRLRLDKGRPFMVDETSM 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20419.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3KRR7_9HYPH1.410e-3647.22UTRA domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A7C2QY10_9HYPH1.710e-3650.00GntR family transcriptional regulator n=1 Tax=Hyph... [more]
UPI0019C090F44.460e-3546.53GntR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A6I0EPB0_HYPSQ3.540e-3446.58GntR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A839PNK5_9HYPH5.470e-3344.16GntR family transcriptional regulator n=1 Tax=Meso... [more]
UPI000931D7A31.580e-3244.44GntR family transcriptional regulator n=1 Tax=Hyph... [more]
UPI0009300A762.060e-3241.78GntR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A135HP19_9HYPH8.580e-3242.21HTH gntR-type domain-containing protein n=1 Tax=Pa... [more]
A0A2S9IQP2_9HYPH6.750e-3143.42GntR family transcriptional regulator n=1 Tax=Phyl... [more]
A0A6N6T681_9HYPH1.560e-3045.77GntR family transcriptional regulator n=1 Tax=Hyph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20419contigP-wetherbeei_contig20419:754..1224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911256_gene1455
PFAMsGntR,UTRA
Model size471
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03710
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.25e-30
EggNOG OGsCOG2188@1|root,COG2188@2|Bacteria,1MUEB@1224|Proteobacteria,2TV81@28211|Alphaproteobacteria
DescriptionTranscriptional regulator GntR family
Cds size471
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.190278-CDS-P-wetherbeei_contig20419:753..12241683186199.190278-CDS-P-wetherbeei_contig20419:753..1224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20419 754..1224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20419.1.1prot_P-wetherbeei_contig20419.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20419 754..1224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20419.1.1

>prot_P-wetherbeei_contig20419.1.1 ID=prot_P-wetherbeei_contig20419.1.1|Name=mRNA_P-wetherbeei_contig20419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MTDSSKLPKLSLTTRSLYLQIRDHFVQLIASGEWVSDSAIESEIDLALSL
GVSTGTVRKALDALESEGLVIRKQGRGTFVTDQSSEAHTSRFSNLRIGEG
HRVTGLVDTHECRLEPASNDEMRKLKLREGDQVFRCKRTRQHHSRRFMYE
TLAISER
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mRNA from alignment at P-wetherbeei_contig20419:754..1224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20419.1.1 ID=mRNA_P-wetherbeei_contig20419.1.1|Name=mRNA_P-wetherbeei_contig20419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig20419:754..1224+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGATTCAAGTAAGTTGCCGAAGCTTAGTCTCACAACGCGCTCGCT TTATCTGCAGATTCGGGATCACTTCGTGCAGCTGATCGCTTCAGGAGAGT GGGTCAGCGATAGTGCAATCGAGAGCGAGATCGACCTCGCTCTGTCATTG GGGGTCAGCACGGGCACGGTTCGCAAGGCCCTCGATGCCCTCGAGAGCGA GGGATTGGTGATCCGAAAACAGGGGCGCGGCACCTTTGTCACCGACCAGT CTTCGGAAGCGCACACCTCCCGGTTCAGCAATCTGAGAATTGGCGAAGGT CACCGCGTCACAGGTCTTGTCGATACCCACGAATGCCGTCTGGAACCTGC ATCCAACGATGAGATGCGCAAATTGAAATTGCGCGAAGGAGACCAGGTCT TCCGGTGCAAGCGGACCCGCCAACACCATTCCCGACGGTTCATGTACGAG ACGCTCGCGATCTCCGAACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20419:754..1224+

>mRNA_P-wetherbeei_contig20419.1.1 ID=mRNA_P-wetherbeei_contig20419.1.1|Name=mRNA_P-wetherbeei_contig20419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig20419:754..1224+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGATTCAAGTAAGTTGCCGAAGCTTAGTCTCACAACGCGCTCGCT
TTATCTGCAGATTCGGGATCACTTCGTGCAGCTGATCGCTTCAGGAGAGT
GGGTCAGCGATAGTGCAATCGAGAGCGAGATCGACCTCGCTCTGTCATTG
GGGGTCAGCACGGGCACGGTTCGCAAGGCCCTCGATGCCCTCGAGAGCGA
GGGATTGGTGATCCGAAAACAGGGGCGCGGCACCTTTGTCACCGACCAGT
CTTCGGAAGCGCACACCTCCCGGTTCAGCAATCTGAGAATTGGCGAAGGT
CACCGCGTCACAGGTCTTGTCGATACCCACGAATGCCGTCTGGAACCTGC
ATCCAACGATGAGATGCGCAAATTGAAATTGCGCGAAGGAGACCAGGTCT
TCCGGTGCAAGCGGACCCGCCAACACCATTCCCGACGGTTCATGTACGAG
ACGCTCGCGATCTCCGAACGG
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