mRNA_P-wetherbeei_contig20414.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20414.1.1
Unique NamemRNA_P-wetherbeei_contig20414.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A482SVZ5_9ARCH (4-demethylwyosine synthase TYW1 (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVZ5_9ARCH)

HSP 1 Score: 234 bits (597), Expect = 2.490e-73
Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK 411
            LACANKC FCWRHHKNPVG EWRW+ DDP  IV +A+ LHV M+ QM+GVPGV+ ERL EA TVRHCALSLVGEPIMYPRINE++  LH R IS+FLVTNAQFP+RI QLDPVTQLYVSVDAATKD+LKA+DRPLFK
Sbjct:  107 LACANKCVFCWRHHKNPVGTEWRWKEDDPEFIVQQAIVLHVNMIKQMKGVPGVLLERLTEAHTVRHCALSLVGEPIMYPRINEMLRALHTREISSFLVTNAQFPERIEQLDPVTQLYVSVDAATKDSLKAIDRPLFK 243          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A7S2GXM7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXM7_9STRA)

HSP 1 Score: 234 bits (597), Expect = 5.110e-73
Identity = 108/136 (79.41%), Postives = 119/136 (87.50%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLF 408
            LACANKC FCWRHHKNPVGREWRW+TDDP  IVAEAV  HVGM+N+ +GVPGV  ERL+EA+TV+HCALSLVGEPIMYPRINEL+ ELH RAISTFLVTNAQFP+ I  L PVTQLYVS+DA TKD L+ VDRPLF
Sbjct:  155 LACANKCVFCWRHHKNPVGREWRWKTDDPDYIVAEAVSKHVGMINEFKGVPGVKPERLEEAYTVKHCALSLVGEPIMYPRINELLEELHKRAISTFLVTNAQFPEAIESLRPVTQLYVSIDAGTKDALREVDRPLF 290          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A2R5GK32_9STRA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK32_9STRA)

HSP 1 Score: 236 bits (603), Expect = 8.370e-72
Identity = 111/137 (81.02%), Postives = 117/137 (85.40%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK 411
            LACANKC FCWRHHKNPVGREWRW+ D+P  IV +AV LH  M+ QM+GVPGV  ERLQEAF VRHCALSLVGEPIMYPRINEL+ ELHAR ISTFLVTNAQFPD I  L PVTQLYVSVDAATKD LK VDRPLFK
Sbjct:  348 LACANKCVFCWRHHKNPVGREWRWKEDEPDVIVEQAVDLHCNMIKQMKGVPGVKPERLQEAFNVRHCALSLVGEPIMYPRINELIDELHARQISTFLVTNAQFPDAIRNLQPVTQLYVSVDAATKDALKEVDRPLFK 484          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A7S2RFR1_9STRA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFR1_9STRA)

HSP 1 Score: 235 bits (599), Expect = 9.710e-72
Identity = 109/137 (79.56%), Postives = 121/137 (88.32%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK 411
            LACANKC FCWRHHKNPVGREWRWRTD+PAAIVAE V  HV M+++ +G  GV  ERL EA+TVRHCALSLVGEPIMYPRINEL+ ELH R IS+FLVTNAQFPD+I  L+PVTQLYVS+DAATKD+LKAVDRPLFK
Sbjct:  290 LACANKCVFCWRHHKNPVGREWRWRTDEPAAIVAEGVDKHVKMIHEFKGAKGVKPERLAEAYTVRHCALSLVGEPIMYPRINELIRELHKRRISSFLVTNAQFPDQIRNLEPVTQLYVSIDAATKDSLKAVDRPLFK 426          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A812TU48_SYMMI (Tyw1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TU48_SYMMI)

HSP 1 Score: 232 bits (591), Expect = 3.490e-71
Identity = 104/137 (75.91%), Postives = 121/137 (88.32%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK 411
            LACANKC FCWRHHKNPVG EWRW+TD+P  IVAEA+R H  M+NQM+GVPGV+ ER QEAFTVRHCALSLVGEPIMYP+IN+++ +LH+R ISTFLVTNAQFP++I  L P TQLYVSVDAAT +++KAVDRPLFK
Sbjct:  230 LACANKCVFCWRHHKNPVGTEWRWKTDEPEMIVAEAIREHQAMVNQMKGVPGVIPERYQEAFTVRHCALSLVGEPIMYPKINDMIQDLHSRKISTFLVTNAQFPEQIKTLHPCTQLYVSVDAATSESMKAVDRPLFK 366          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A7S1XQM9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQM9_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.530e-70
Identity = 104/137 (75.91%), Postives = 117/137 (85.40%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK 411
            LACANKC FCWRHHKNPVGREWRW+ DDP  IVA A+  H   + QM+GVPGVV ER + AFTVRHCALSLVGEPIMYP INEL+ +LH+R ISTFLVTNAQFP+++A L PVTQLYVS+DAAT D+LKAVDRPLFK
Sbjct:  109 LACANKCVFCWRHHKNPVGREWRWQVDDPHEIVATAIEKHQNTVKQMKGVPGVVPERYEAAFTVRHCALSLVGEPIMYPHINELLADLHSRDISTFLVTNAQFPEQMAALGPVTQLYVSIDAATPDSLKAVDRPLFK 245          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A7S3ZYB5_9STRA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYB5_9STRA)

HSP 1 Score: 231 bits (588), Expect = 5.010e-70
Identity = 107/137 (78.10%), Postives = 119/137 (86.86%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK 411
            LACANKC FCWRHHKNPV  EW+W++DDPA IVAEAVRLHV M+N+ RGVPGV+ ER +EA TVRHCALSLVGEPIMYPRINEL+GELHAR IS+FLVTNAQFP+ I  L PVTQLYVSVDA  KD L+ VDRPLF+
Sbjct:  328 LACANKCVFCWRHHKNPVATEWKWKSDDPAMIVAEAVRLHVAMINECRGVPGVLEERWREAHTVRHCALSLVGEPIMYPRINELIGELHARKISSFLVTNAQFPEAIRTLRPVTQLYVSVDAPNKDDLEEVDRPLFR 464          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A836CDS3_9STRA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDS3_9STRA)

HSP 1 Score: 229 bits (583), Expect = 2.580e-69
Identity = 108/136 (79.41%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLF 408
            LACANKC FCWRHHKNPVGREWRW+ DDP  IV EAV  H  M+N+M+GVPGV  ER +EAFTV HCALSLVGEPIMYP INELV ELH R ISTFLVTNAQFP+ I  L PVTQLYVS+DAATKDTLKAVDRPLF
Sbjct:  325 LACANKCVFCWRHHKNPVGREWRWKVDDPLMIVEEAVTRHQAMINEMKGVPGVKLERWKEAFTVAHCALSLVGEPIMYPHINELVAELHRRRISTFLVTNAQFPECIEALVPVTQLYVSIDAATKDTLKAVDRPLF 460          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A7R9U1E8_9STRA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1E8_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.620e-68
Identity = 103/137 (75.18%), Postives = 118/137 (86.13%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK 411
            LACANKC FCWRHHKNPVGREWRW+ DDP  IVA AV  H GM+ Q++GVPGV+ ER ++AF VRHCALSLVGEPIMYP INELV +LH+R ISTFLVTNAQFP+++A L PVTQLYVS+DAAT ++LK VDRPLFK
Sbjct:  382 LACANKCVFCWRHHKNPVGREWRWQVDDPHEIVASAVERHRGMIKQLKGVPGVIPERYEDAFNVRHCALSLVGEPIMYPHINELVDDLHSRRISTFLVTNAQFPEQMANLGPVTQLYVSIDAATPESLKEVDRPLFK 518          
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Match: A0A7S3PJD2_9STRA (tRNA 4-demethylwyosine synthase (AdoMet-dependent) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJD2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 2.660e-68
Identity = 102/136 (75.00%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGVPGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTNAQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLF 408
            LACANKC FCWRHHKNPVG+EWRW+ D P  IV+EA+ LH  M+  M+GVPGV   RL+EA+TV+HCALSLVGEPIMYPRINE+VGELH R ISTFLVTNAQFP  I  LDPVTQLYVS+DA+ KD LKA+DRPLF
Sbjct:  242 LACANKCVFCWRHHKNPVGKEWRWKMDPPDMIVSEAINLHRKMIKTMKGVPGVQPNRLEEAYTVKHCALSLVGEPIMYPRINEMVGELHQRDISTFLVTNAQFPKAIIDLDPVTQLYVSIDASNKDALKAIDRPLF 377          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20414.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SVZ5_9ARCH2.490e-7378.834-demethylwyosine synthase TYW1 (Fragment) n=1 Tax... [more]
A0A7S2GXM7_9STRA5.110e-7379.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2R5GK32_9STRA8.370e-7281.02tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A7S2RFR1_9STRA9.710e-7279.56tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A812TU48_SYMMI3.490e-7175.91Tyw1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S1XQM9_9STRA1.530e-7075.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3ZYB5_9STRA5.010e-7078.10tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A836CDS3_9STRA2.580e-6979.41tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A7R9U1E8_9STRA2.620e-6875.18tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]
A0A7S3PJD2_9STRA2.660e-6875.00tRNA 4-demethylwyosine synthase (AdoMet-dependent)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20414contigP-wetherbeei_contig20414:3..1119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000014291
PFAMsFlavodoxin_1,Radical_SAM,Wyosine_form
Model size411
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.75e-69
EggNOG OGsCOG0731@1|root,KOG1160@2759|Eukaryota,1MAVA@121069|Pythiales
DescriptionTRNA wybutosine-synthesizing protein. Source PGD
Cds size411
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186199.0952775-CDS-P-wetherbeei_contig20414:2..541683186199.0952775-CDS-P-wetherbeei_contig20414:2..54Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20414 3..54 +
1683186199.104202-CDS-P-wetherbeei_contig20414:410..5751683186199.104202-CDS-P-wetherbeei_contig20414:410..575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20414 411..575 +
1683186199.1122992-CDS-P-wetherbeei_contig20414:925..11191683186199.1122992-CDS-P-wetherbeei_contig20414:925..1119Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20414 926..1119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20414.1.1prot_P-wetherbeei_contig20414.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20414 3..1119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20414.1.1

>prot_P-wetherbeei_contig20414.1.1 ID=prot_P-wetherbeei_contig20414.1.1|Name=mRNA_P-wetherbeei_contig20414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
LACANKCTFCWRHHKNPVGREWRWRTDDPAAIVAEAVRLHVGMMNQMRGV
PGVVAERLQEAFTVRHCALSLVGEPIMYPRINELVGELHARAISTFLVTN
AQFPDRIAQLDPVTQLYVSVDAATKDTLKAVDRPLFK
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mRNA from alignment at P-wetherbeei_contig20414:3..1119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20414.1.1 ID=mRNA_P-wetherbeei_contig20414.1.1|Name=mRNA_P-wetherbeei_contig20414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1117bp|location=Sequence derived from alignment at P-wetherbeei_contig20414:3..1119+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGTGTGCAAACAAGTGTACGTTTTGCTGGAGGCACCACAAGAATCC AGGTGATTTTTACTGTGCGACGTGCTGTTGGTTTGTATAGACCACTGGCG TGTCTAGGATACTGAACTCTTACGATACGGAACTCTTCTCCTCTGCCTGC AGTCGTGTCTCTCCGCCCGTTTAAACGGTACATGAGCCAGCAGAATTGTC TAAGGGCCGTTCGGGGTTGCCGCCTTGATGGTACTTCCGTTTGCCCTGCT GTTACATGCTAAGCACCTTTCTTCCCTCCCTCCCTCTACCCTTCTTCACC TGACTGAGACCTCCCCCTCCCCCCAACCTCCTCTTGCCTTTACCCGACTG GGCGGATTCCGGGGCGCCGCCGGGGCGCGGCGCGGCAACAAAAACGGAAA CAACACAGTGGGTCGGGAGTGGCGATGGCGGACGGACGACCCGGCGGCGA TCGTGGCCGAGGCGGTGCGGCTGCACGTGGGGATGATGAACCAGATGCGC GGCGTGCCCGGTGTTGTCGCCGAGCGGCTGCAGGAGGCCTTCACCGTGCG CCATTGCGCGTTGTCCCTCGTCGGTGAGTTGCTTTGTTCGCTTGTTGCTG CTGCTCTGTTTCATTTGTTTCGGTTTGGTTTTGGCTTTCGTTTGGCGTTT GTTGCTTACTTCTGGCCTCGTTCGGACCATTCGGTCGCTGAGAAAGGCCT GCGCAGTCTGCCCCAGAAGAGTTGTCTTCCAGCCACTTCAGAAACTCCGC GATGGTGCCGCCGTGCCGTTCGCACCGTGCTTGCGCGTGAACCAACCTCC CCTCTGCTGCCAGTCCTGCTAACCGAACAGCCTGTCTCTTCCTCCTTTCC TTCCCCTCCTTCTCGTGTTCGCCGTGCCCGCCATTGACCTCACCCTTCTC CCTCCTTCGTCCCCCGCTTGCAGGCGAGCCCATCATGTATCCGCGCATCA ATGAGCTGGTGGGTGAGCTGCACGCCCGCGCCATCTCAACCTTCCTGGTG ACCAACGCGCAGTTCCCAGACCGCATAGCGCAGCTCGACCCCGTCACGCA GCTCTACGTGAGCGTCGACGCAGCTACCAAGGACACCCTCAAGGCCGTCG ACCGGCCCCTCTTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20414:3..1119+

>mRNA_P-wetherbeei_contig20414.1.1 ID=mRNA_P-wetherbeei_contig20414.1.1|Name=mRNA_P-wetherbeei_contig20414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig20414:3..1119+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGTGTGCAAACAAGTGTACGTTTTGCTGGAGGCACCACAAGAATCC
AGTGGGTCGGGAGTGGCGATGGCGGACGGACGACCCGGCGGCGATCGTGG
CCGAGGCGGTGCGGCTGCACGTGGGGATGATGAACCAGATGCGCGGCGTG
CCCGGTGTTGTCGCCGAGCGGCTGCAGGAGGCCTTCACCGTGCGCCATTG
CGCGTTGTCCCTCGTCGGCGAGCCCATCATGTATCCGCGCATCAATGAGC
TGGTGGGTGAGCTGCACGCCCGCGCCATCTCAACCTTCCTGGTGACCAAC
GCGCAGTTCCCAGACCGCATAGCGCAGCTCGACCCCGTCACGCAGCTCTA
CGTGAGCGTCGACGCAGCTACCAAGGACACCCTCAAGGCCGTCGACCGGC
CCCTCTTCAAG
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