mRNA_P-wetherbeei_contig20407.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20407.1.1
Unique NamemRNA_P-wetherbeei_contig20407.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20407.1.1 vs. uniprot
Match: A0A521RA17_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A521RA17_9BACT)

HSP 1 Score: 167 bits (422), Expect = 1.330e-51
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1
Query:    1 VLTTYRFDHPETDASKTLDMRAYIYASLFGPVYVLANGFPVLALLMVLISVAIFVAAFIGFGFVDWFLGSQLITIIALIGVPIFALAAQGIAAIELVRRGYLRAGWREGY 330
            +L TYRFDHPETDASKTLD +AY+YASLFGP+YVL NGFP+LALLM+ IS  IF+ AF+GFGF+DW L S+L+TI AL GVP+ AL  QGIAAIELVR GYLR+GWREGY
Sbjct:    1 MLGTYRFDHPETDASKTLDAKAYVYASLFGPLYVLVNGFPILALLMIPISAMIFILAFVGFGFLDWVLSSELVTIFALFGVPVAALVVQGIAAIELVRVGYLRSGWREGY 110          
BLAST of mRNA_P-wetherbeei_contig20407.1.1 vs. uniprot
Match: A0A1F2ZXE0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F2ZXE0_9PROT)

HSP 1 Score: 157 bits (398), Expect = 6.070e-48
Identity = 80/110 (72.73%), Postives = 92/110 (83.64%), Query Frame = 1
Query:    1 VLTTYRFDHPETDASKTLDMRAYIYASLFGPVYVLANGFPVLALLMVLISVAIFVAAFIGFGFVDWFLGSQLITIIALIGVPIFALAAQGIAAIELVRRGYLRAGWREGY 330
            + +TYRFDHPETDASKTLD+ AY +ASLFGP YVL  GFP+LALLMV +S  IFV AF GFG VDW LGS+++T+ AL   P+ ALAAQGIAAIELVR+GYLRAGWREGY
Sbjct:    1 MFSTYRFDHPETDASKTLDVWAYFWASLFGPFYVLFAGFPLLALLMVPVSAMIFVLAFAGFGLVDWVLGSEVVTVFALFATPVAALAAQGIAAIELVRKGYLRAGWREGY 110          
BLAST of mRNA_P-wetherbeei_contig20407.1.1 vs. uniprot
Match: A0A6A7M2L1_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7M2L1_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 2.810e-18
Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   76 ASLFGPVYVLANGFPVLALLMVLISVAIFVAAFIGFGFVDWFLGSQLITIIALIGVPIFALAAQGIAAIELVRRGYLRAGWREGY 330
            ASLFGP+YVL NGF  L+LLM L+S  I    F G  F+  F  S  I  +AL  VPI AL  QG+A +E+VR GY+R GWREGY
Sbjct:    2 ASLFGPLYVLFNGFVALSLLMFLVSAVIGGVTFGGLVFILLFFDSSAIRSLALSVVPIVALVVQGVAGVEIVRAGYMRRGWREGY 86          
BLAST of mRNA_P-wetherbeei_contig20407.1.1 vs. uniprot
Match: A0A521LM41_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LM41_9HYPH)

HSP 1 Score: 69.3 bits (168), Expect = 5.370e-13
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 VLTTYRFDHPETDASKTLDMRAYIYASLFGPVYVLANG--FPVLALLMVLISVAIFVAAFIGFGFVDWFLGSQLITIIALIGVPIFALAAQGIAAIELVRRGYLRAGWREGY 330
            +L TYR D P++D S  +D  +Y++A+L GP YV++ G  F +LA LM  I++ + + AF+G         + ++ + A++     A    G+A ++LV  GY+RAGW+ GY
Sbjct:    1 MLPTYRLDRPDSDDSIIIDGWSYVWAALAGPFYVMSKGKGFYLLAALMAAITLMLAIGAFLGLLIAVQLFDASVLGLAAMLISIAGAFLLNGVAGVQLVHWGYVRAGWKMGY 112          
BLAST of mRNA_P-wetherbeei_contig20407.1.1 vs. uniprot
Match: A0A537N5J1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N5J1_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 7.310e-10
Identity = 36/112 (32.14%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    4 LTTYRFDHPETDASKTLDMRAYIYASLFGPVYVLANGFPVLALLMVLISVAIFV---AAFIGFGFVDWFLGSQLITIIALIGVPIFALAAQGIAAIELVRRGYLRAGWREGY 330
            + T+  +H +T  ++ L    Y+   L GP+Y+L  GFP LAL+M+ ISV +F       +      W   +++ T++ +  V +   A  G  A++++R GY+R G+REGY
Sbjct:    1 MATFVLEHRQTGDTQILGGWGYVCGGLLGPIYLLIKGFPGLALVMIPISVLVFTIGGTVMVLVALASW--PTEITTVVGIFLVVVM-FAVHGYLAVQMLRAGYIRRGYREGY 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20407.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A521RA17_9BACT1.330e-5174.55Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A1F2ZXE0_9PROT6.070e-4872.73Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6A7M2L1_9PROT2.810e-1855.29Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A521LM41_9HYPH5.370e-1335.71Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A537N5J1_9PROT7.310e-1032.14Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20407contigP-wetherbeei_contig20407:261..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size333
Hectar predicted targeting categorysignal anchor
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186198.820026-CDS-P-wetherbeei_contig20407:260..5931683186198.820026-CDS-P-wetherbeei_contig20407:260..593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20407 261..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20407.1.1prot_P-wetherbeei_contig20407.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20407 261..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20407.1.1

>prot_P-wetherbeei_contig20407.1.1 ID=prot_P-wetherbeei_contig20407.1.1|Name=mRNA_P-wetherbeei_contig20407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
VLTTYRFDHPETDASKTLDMRAYIYASLFGPVYVLANGFPVLALLMVLIS
VAIFVAAFIGFGFVDWFLGSQLITIIALIGVPIFALAAQGIAAIELVRRG
YLRAGWREGY*
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mRNA from alignment at P-wetherbeei_contig20407:261..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20407.1.1 ID=mRNA_P-wetherbeei_contig20407.1.1|Name=mRNA_P-wetherbeei_contig20407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig20407:261..593+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGACGACGTATCGATTTGATCATCCCGAGACGGACGCCTCGAAGAC CCTGGACATGCGGGCGTATATCTATGCCTCGCTGTTCGGTCCGGTGTACG TTCTGGCCAATGGCTTCCCGGTCCTTGCCCTGCTGATGGTGTTGATCAGC GTGGCGATCTTCGTCGCCGCCTTCATCGGTTTCGGCTTCGTCGATTGGTT TCTCGGCTCCCAGCTGATCACGATCATCGCCCTGATCGGGGTCCCTATCT TCGCCCTGGCGGCCCAGGGCATTGCCGCCATAGAGCTGGTCCGCAGAGGC TATCTGCGTGCCGGCTGGCGCGAAGGCTACTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20407:261..593+

>mRNA_P-wetherbeei_contig20407.1.1 ID=mRNA_P-wetherbeei_contig20407.1.1|Name=mRNA_P-wetherbeei_contig20407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig20407:261..593+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGACGACGTATCGATTTGATCATCCCGAGACGGACGCCTCGAAGAC
CCTGGACATGCGGGCGTATATCTATGCCTCGCTGTTCGGTCCGGTGTACG
TTCTGGCCAATGGCTTCCCGGTCCTTGCCCTGCTGATGGTGTTGATCAGC
GTGGCGATCTTCGTCGCCGCCTTCATCGGTTTCGGCTTCGTCGATTGGTT
TCTCGGCTCCCAGCTGATCACGATCATCGCCCTGATCGGGGTCCCTATCT
TCGCCCTGGCGGCCCAGGGCATTGCCGCCATAGAGCTGGTCCGCAGAGGC
TATCTGCGTGCCGGCTGGCGCGAAGGCTACTAG
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