mRNA_P-wetherbeei_contig20402.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20402.1.1
Unique NamemRNA_P-wetherbeei_contig20402.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20402.1.1 vs. uniprot
Match: D7G8V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V7_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.340e-20
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 LAPEAIRVEVTFEVGNTPNVLLEESQPGNRLIVKGFPKRRDGRPGAAEQSGRIERGDFLEACNYIILEGIPFRSAIDLLMAQPY 252
            + PEA   EV F  G TPN+LLEESQPGN+L VK FPKR DG  G AE  G+IE+GDFL A N I LEG+ F  AI +L  Q +
Sbjct:  287 IGPEATVFEVVFPPGRTPNILLEESQPGNKLTVKSFPKRADGSRGTAEADGKIEKGDFLLAVNSIRLEGLGFNDAIRVLTTQQW 370
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20402.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8V7_ECTSI2.340e-2058.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20402contigP-wetherbeei_contig20402:409..1227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog653948.CCA27085
PFAMsFn3-like,Glyco_hydro_3,Glyco_hydro_3_C
Model size672
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.22e-07
EggNOG OGsCOG1472@1|root,2QQ55@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-15_004420.1
EC3.2.1.37
Descriptionxylan 1,4-beta-xylosidase activity
Cds size672
COG categoryG
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186198.7002156-CDS-P-wetherbeei_contig20402:408..10051683186198.7002156-CDS-P-wetherbeei_contig20402:408..1005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20402 409..1005 +
1683186198.7221851-CDS-P-wetherbeei_contig20402:1152..12271683186198.7221851-CDS-P-wetherbeei_contig20402:1152..1227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20402 1153..1227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20402.1.1prot_P-wetherbeei_contig20402.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20402 409..1227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20402.1.1

>prot_P-wetherbeei_contig20402.1.1 ID=prot_P-wetherbeei_contig20402.1.1|Name=mRNA_P-wetherbeei_contig20402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
LAPEAIRVEVTFEVGNTPNVLLEESQPGNRLIVKGFPKRRDGRPGAAEQS
GRIERGDFLEACNYIILEGIPFRSAIDLLMAQPYPLTLRFRRVPRHLLAH
AFERWSVNALRSVLLEVGVELTGLERHAQLVAMARRSFWHRPVPLPPAPP
KVEPGAAAVANGETSIMGWLLVKPPGEAVFRRFFCDLHGAELFLHNPVAY
EATPAMSVDMSTIRLVATTRSSEE
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mRNA from alignment at P-wetherbeei_contig20402:409..1227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20402.1.1 ID=mRNA_P-wetherbeei_contig20402.1.1|Name=mRNA_P-wetherbeei_contig20402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig20402:409..1227+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCCCGAAGCGATCCGGGTGGAGGTGACGTTCGAGGTCGGCAACAC
ACCCAACGTCCTGTTGGAGGAGTCGCAGCCGGGCAACCGCTTGATCGTCA
AAGGCTTTCCGAAGCGGCGGGACGGCCGGCCCGGCGCGGCGGAGCAGTCG
GGGCGCATCGAACGCGGCGACTTTCTCGAGGCGTGCAATTACATCATCCT
GGAGGGGATCCCGTTCCGCTCGGCCATCGACCTTTTGATGGCCCAGCCCT
ATCCGCTCACGCTGCGCTTTCGGCGCGTGCCGCGGCACCTGCTGGCGCAC
GCCTTCGAGCGGTGGTCTGTCAACGCGCTGCGCAGCGTGCTGCTGGAAGT
GGGCGTGGAGCTGACGGGGCTGGAGCGCCACGCCCAGCTGGTCGCCATGG
CCCGCCGCTCTTTCTGGCACCGGCCCGTCCCACTGCCGCCGGCGCCGCCC
AAGGTGGAGCCCGGGGCAGCCGCCGTCGCCAACGGTGAGACTAGCATCAT
GGGCTGGCTACTGGTGAAGCCGCCGGGCGAAGCCGTCTTCCGCCGCTTCT
TCTGCGACCTCCACGGCGCCGAGCTCTTCCTGCACAACCCCGTCGCGGTC
CGCGCGGCCGACGACGCCGATCCTTCTGCCTCTGCTGCTGCCGCCTTCAA
TGGAGTAAGCAGTGGAAATGGCGCCAGTAGTAGCGTCGGCGTCGGCGGAA
CTAGTGACGGCGGTGGCAGCAACACCAGTAGCAGCAGCAGCGAGTACGAG
GCGACGCCGGCCATGTCGGTGGACATGTCGACTATTCGGCTGGTGGCGAC
GACACGGTCGAGCGAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20402:409..1227+

>mRNA_P-wetherbeei_contig20402.1.1 ID=mRNA_P-wetherbeei_contig20402.1.1|Name=mRNA_P-wetherbeei_contig20402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig20402:409..1227+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCCCGAAGCGATCCGGGTGGAGGTGACGTTCGAGGTCGGCAACAC
ACCCAACGTCCTGTTGGAGGAGTCGCAGCCGGGCAACCGCTTGATCGTCA
AAGGCTTTCCGAAGCGGCGGGACGGCCGGCCCGGCGCGGCGGAGCAGTCG
GGGCGCATCGAACGCGGCGACTTTCTCGAGGCGTGCAATTACATCATCCT
GGAGGGGATCCCGTTCCGCTCGGCCATCGACCTTTTGATGGCCCAGCCCT
ATCCGCTCACGCTGCGCTTTCGGCGCGTGCCGCGGCACCTGCTGGCGCAC
GCCTTCGAGCGGTGGTCTGTCAACGCGCTGCGCAGCGTGCTGCTGGAAGT
GGGCGTGGAGCTGACGGGGCTGGAGCGCCACGCCCAGCTGGTCGCCATGG
CCCGCCGCTCTTTCTGGCACCGGCCCGTCCCACTGCCGCCGGCGCCGCCC
AAGGTGGAGCCCGGGGCAGCCGCCGTCGCCAACGGTGAGACTAGCATCAT
GGGCTGGCTACTGGTGAAGCCGCCGGGCGAAGCCGTCTTCCGCCGCTTCT
TCTGCGACCTCCACGGCGCCGAGCTCTTCCTGCACAACCCCGTCGCGTAC
GAGGCGACGCCGGCCATGTCGGTGGACATGTCGACTATTCGGCTGGTGGC
GACGACACGGTCGAGCGAGGAG
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