mRNA_P-wetherbeei_contig20359.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20359.1.1
Unique NamemRNA_P-wetherbeei_contig20359.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: A0A6H5KU75_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU75_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 6.220e-39
Identity = 83/159 (52.20%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    7 VIRDAFGAAESTATLAAHNAALAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLALV 483
            V+   FG AES    A+ ++ +A +ALPGY  A  L+ R+GPRR+Q+ GF AMALL+   G    +L  H    + L+ LTFF +N GPNSTTF +PSL FP  VR S+NG+SAA GKLGAL G+  F P A+ WG+GPVLV+C +IS  G  LTLA V
Sbjct:  343 VLEAVFGNAESLRDEASQDSLVALVALPGYFVAVALISRMGPRRVQVQGFLAMALLFAVIGLSFHSLGRHADILMLLYSLTFFFSNFGPNSTTFMLPSLTFPDQVRSSLNGISAAAGKLGALAGSLMFKPAAETWGVGPVLVVCALISLAGSFLTLAFV 501          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: A0A7S2V487_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V487_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.440e-35
Identity = 79/161 (49.07%), Postives = 106/161 (65.84%), Query Frame = 1
Query:    4 QVIRDAFGAAESTATLAAHNAALAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTL-FGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLALV 483
            QV+ + FGA E+T  +A     + A A+PGY  A   M R+GP+ +Q+ GF  MALLY   G    AL+     AL L +GLTF  +N GPNSTTF +PSL FPA  R S+NG+ AA GKLGA++G++ F+PL++ WG+  VLVLCG+I+  G LL+L  V
Sbjct:  248 QVLENVFGATETTREVARQEMVVYAFAVPGYYLALFFMARMGPKIMQLQGFVLMALLYALIGLFWNALDRVSPTALLLLYGLTFLFSNFGPNSTTFVLPSLTFPARGRSSLNGICAAMGKLGAIVGSSCFSPLSEEWGVPHVLVLCGVIALLGALLSLLFV 408          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: A0A835YXC6_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.340e-30
Identity = 72/139 (51.80%), Postives = 91/139 (65.47%), Query Frame = 1
Query:   70 LAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLALVP 486
            L A+ALPGY  A V++   GP+ LQ+ GF+AMA  Y   G     L  H  AAL L+  TF  ANVGPNSTTF +PS +F   VR S++GVS A GKLGA+LG+ AF PLA+ WG+  +L++CG IS     +T ALVP
Sbjct:  353 LKAVALPGYIVAIVVIDHTGPKALQLLGFSAMAAAYAAIGLAFDTLPRHPRAALALYAATFLFANVGPNSTTFVLPSTLFREEVRASLSGVSGAAGKLGAILGSLAFDPLAERWGVAVILLICGGISLVALAVTAALVP 491          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: A0A7S2V8Z7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8Z7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.420e-29
Identity = 72/161 (44.72%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    4 QVIRDAFGAAESTATLAAHNAALAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGA-GHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLALV 483
            +V+   FG  ES   L      + A+ALPGY  A + M R+GP+ +Q+ GF  M ++Y+  G      LEG     L ++ LTF  +N GPNSTTF +PSL FPA  R S+NG+ AACGKLGA++G+++F+ L   WG+  VL+LCG I+  G LLT+  V
Sbjct:  198 EVLGTIFGGDESPTQLTTEEILVYAIALPGYYLALLFMHRLGPKVIQLQGFIMMGIIYLLIGIFWTQMLEGSAAILLVMYALTFVFSNFGPNSTTFILPSLTFPAHARSSLNGICAACGKLGAIVGSSSFSTLDADWGVQHVLMLCGGIAFLGALLTVFFV 358          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: A0A7S2P1E8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P1E8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.730e-29
Identity = 73/160 (45.62%), Postives = 102/160 (63.75%), Query Frame = 1
Query:    7 VIRDAFGAAESTATLAAHNAALAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLALVP 486
            V+ +AFG +E+ A  A     ++A+ALPGY  +  ++GRV PR +Q+ GF AMA+LY   G     L    +  + L+G TFF AN GPN+TTF +PS+++    R ++NGVSAA GK GALLGA+ F P+AD  G   V+++C  +S  G LLT A VP
Sbjct:  339 VLDEAFGQSETIAQTATDTLLISAMALPGYFVSIAVIGRVNPRYVQMQGFIAMAILYGVIGVCFDELAKLRYLLIVLYGSTFFFANFGPNATTFMLPSIIYSPRCRSTLNGVSAASGKAGALLGASFFEPMADTIGDQYVMLICAGVSIVGFLLTYACVP 498          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: B8BUN8_THAPS (Phosphate transporter (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUN8_THAPS)

HSP 1 Score: 115 bits (289), Expect = 8.490e-28
Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 1
Query:    1 PQVIRDAFGAAESTATLAAHNAALAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLAL 480
            P V+  AFG+AE+  T    +  ++ +ALPGY  +  ++G+  P+R+Q+ GF  MA+LY   G    AL       LTL+GLTFF +N GPN+TTF +PS+ F    R ++NG+ AA GK+GAL G+  F PLA   G   V++ C ++S     +T+ L
Sbjct:  218 PVVLSSAFGSAETILTTVRDSTIISIMALPGYFVSVAMLGKQSPKRIQLQGFLVMAVLYAIIGFRFSALSSKRLELLTLYGLTFFFSNYGPNTTTFMLPSITFSRPCRSTLNGICAASGKVGALFGSIVFLPLAQWLGNDKVMLACAVVSLVAAAMTMFL 377          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: A0A7S2F140_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2F140_9DINO)

HSP 1 Score: 115 bits (287), Expect = 4.850e-27
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   58 HNAALAA----LALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTLF-GLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIIS 450
            H A LA     +A+PGY  +  L+ RVG  RLQ WGF AMA+ +         L+G+    L +F GLTF  +N+GPN+TTFA+P  V+P  +R + +G+SAA GK+GA++GAAAF+PL DA GIGPVL+ CG+++
Sbjct:  305 HEALLAMYIVFMAIPGYLLSIYLIERVGRYRLQFWGFVAMAVNFFLVACLESVLKGNARWVLIIFFGLTFLFSNLGPNTTTFAIPVEVYPTIIRATCHGLSAAAGKIGAVIGAAAFSPLEDAVGIGPVLISCGVVA 440          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: L8GR49_ACACA (Transporter, major facilitator superfamily superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GR49_ACACA)

HSP 1 Score: 114 bits (284), Expect = 1.380e-26
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   70 LAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLALVPTTAGR 501
            +A + LPG+  +  L+ R G R LQ+WGFA M +LY+  G     +     A + L+GLT+F+AN GPN+TT+ +P+ VFP  +R + +G+SAACGK GA +G     P+ + WG+G  L++CG + A G L+T+  V  T G+
Sbjct:  270 VAFIGLPGHWLSIYLIDRWGRRTLQMWGFALMTVLYMVLGGFFDWVTMFSPAFIFLYGLTYFIANAGPNTTTYVLPAEVFPTKIRSTCHGLSAACGKAGAAIGTIVMGPMLEQWGVGVTLMVCGGVCAAGYLMTVLFVDETVGK 413          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: A0A7S1JKE5_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JKE5_9ALVE)

HSP 1 Score: 108 bits (270), Expect = 1.420e-25
Identity = 65/142 (45.77%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   70 LAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIISAGGGLLTLALVPTTA 495
            +A LA+PGY  A V   R+G RRLQ++GF  M L +V  G    A        L LFGLTF  +N GPN+TTF +P+ ++P  +R S +G+SAA GKLGA+LG+A FAPL  + G+  +L+ C  ++  G L TL L P +A
Sbjct:  117 VAGLAMPGYVLAVVYAERIGYRRLQLFGFGMMGLCFVLLGIEQYAGGQRPAIELVLFGLTFLFSNFGPNTTTFLLPTQIYPTLIRASCHGISAASGKLGAVLGSAMFAPLQQSIGLPSLLLCCAAVALLGHLATLTLTPLSA 258          
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Match: R1EZN0_EMIHU (Putative inorganic phosphate transporter n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EZN0_EMIHU)

HSP 1 Score: 111 bits (277), Expect = 1.650e-25
Identity = 79/182 (43.41%), Postives = 99/182 (54.40%), Query Frame = 1
Query:    1 PQVIRDAFGAAESTA---------TLAAHNAALAALALPGYGAAAVLMGRVGPRRLQIWGFAAMALLYVGTGAGHGALEGHGH----AALTLFGLTFFVANVGPNSTTFAMPSLVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLAD----AWGIGP----VLVLCGIISAGGGLLTLALV 483
            P V+   F AA   A          L A  A +AA+ LPGY  +  LM RVG RR+Q+ GFA MA  +   G  + +LE  G     A L L+GLTFF +N GPNSTTF +PS  FP  VR ++NG SAA GKLGA LG++AF P+ D    AWG        ++ C  +S  G  LT   V
Sbjct:  275 PTVLSSVFHAAAGDAPPLQGDLAHNLCAQMAVVAAIGLPGYYVSVWLMDRVGRRRIQLQGFACMAAAFAALGLAYDSLESAGAGGRVAMLLLYGLTFFFSNFGPNSTTFILPSETFPPEVRTTLNGFSAAMGKLGATLGSSAFKPMKDGISAAWGPAAGLRWTMLACAAVSLAGFALTYGFV 456          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU75_9PHAE6.220e-3952.20MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V487_9STRA7.440e-3549.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YXC6_9STRA1.340e-3051.80Major facilitator superfamily domain-containing pr... [more]
A0A7S2V8Z7_9STRA5.420e-2944.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2P1E8_9STRA5.730e-2945.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8BUN8_THAPS8.490e-2840.63Phosphate transporter (Fragment) n=1 Tax=Thalassio... [more]
A0A7S2F140_9DINO4.850e-2748.53Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
L8GR49_ACACA1.380e-2641.67Transporter, major facilitator superfamily superfa... [more]
A0A7S1JKE5_9ALVE1.420e-2545.77Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
R1EZN0_EMIHU1.650e-2543.41Putative inorganic phosphate transporter n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20359contigP-wetherbeei_contig20359:157..972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps261414
PFAMsSugar_tr
Model size501
Max annot lvl2836|Bacillariophyta
KEGG koko:K08176
KEGG TC2.A.1.9
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.39e-28
EggNOG OGsKOG0252@1|root,KOG0252@2759|Eukaryota,2XE9H@2836|Bacillariophyta
DescriptionSugar (and other) transporter
Cds size501
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.3624797-CDS-P-wetherbeei_contig20359:156..3601683186197.3624797-CDS-P-wetherbeei_contig20359:156..360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20359 157..360 -
1683186197.3733342-CDS-P-wetherbeei_contig20359:675..9721683186197.3733342-CDS-P-wetherbeei_contig20359:675..972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20359 676..972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20359.1.1prot_P-wetherbeei_contig20359.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20359 157..972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20359.1.1

>prot_P-wetherbeei_contig20359.1.1 ID=prot_P-wetherbeei_contig20359.1.1|Name=mRNA_P-wetherbeei_contig20359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
PQVIRDAFGAAESTATLAAHNAALAALALPGYGAAAVLMGRVGPRRLQIW
GFAAMALLYVGTGAGHGALEGHGHAALTLFGLTFFVANVGPNSTTFAMPS
LVFPAAVRGSMNGVSAACGKLGALLGAAAFAPLADAWGIGPVLVLCGIIS
AGGGLLTLALVPTTAGR
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mRNA from alignment at P-wetherbeei_contig20359:157..972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20359.1.1 ID=mRNA_P-wetherbeei_contig20359.1.1|Name=mRNA_P-wetherbeei_contig20359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig20359:157..972- (Phaeothamnion wetherbeei SAG_119_79)
CCGCAGGTGATCCGCGACGCCTTCGGCGCCGCCGAGAGCACGGCGACCCT CGCGGCCCACAATGCTGCGCTGGCGGCGCTGGCGCTGCCGGGCTACGGGG CTGCCGCCGTTCTCATGGGGCGGGTCGGGCCGCGGCGGCTGCAAATCTGG GGTTTTGCCGCGATGGCACTCCTGTACGTCGGGACAGGGGCGGGCCACGG GGCGCTGGAGGGTCATGGCCACGCGGCGCTCACGCTGTTCGGGCTGACGT TTTTCGTGGCGAACGTCGGCCCCAACTCGACCACCTTTGCGATGCCGGTG AGAGAGGAGCCAAGGGCTTTCTGTTCGGGATTAATATCAGCGCACGGTTG GTGGGCAAGGCAGTGTTTTTTTTCTGAACGCGTCGTTTTCCAAAGGACAG TATAGACGCCGGTTTCGAATAGGTGACAGTGAAGTCGCTATGGTCCTCGC TGGCTTGGACAACGGTTTGATTTCCATCTCGGGCCCCTTTTGGCACCATG CCTGCATTGCTTTTCTCCTTCCAGTTTGTGTGGAAAACCCCTCAGTAACT TAACCAACTCGTTTCGCTTCTCTCTTCAACCTTGCTCCTTTTGCGTCACC CTCCAACTCCAGTCGCTGGTGTTTCCGGCGGCGGTACGCGGCTCGATGAA CGGCGTGTCGGCGGCCTGTGGCAAGCTCGGCGCGCTGCTGGGCGCCGCCG CCTTCGCCCCGCTGGCTGACGCATGGGGCATCGGCCCTGTGCTGGTCCTG TGCGGGATCATTTCCGCCGGCGGCGGCCTGCTGACGCTAGCCCTCGTGCC AACGACCGCCGGGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20359:157..972-

>mRNA_P-wetherbeei_contig20359.1.1 ID=mRNA_P-wetherbeei_contig20359.1.1|Name=mRNA_P-wetherbeei_contig20359.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig20359:157..972- (Phaeothamnion wetherbeei SAG_119_79)
CCGCAGGTGATCCGCGACGCCTTCGGCGCCGCCGAGAGCACGGCGACCCT
CGCGGCCCACAATGCTGCGCTGGCGGCGCTGGCGCTGCCGGGCTACGGGG
CTGCCGCCGTTCTCATGGGGCGGGTCGGGCCGCGGCGGCTGCAAATCTGG
GGTTTTGCCGCGATGGCACTCCTGTACGTCGGGACAGGGGCGGGCCACGG
GGCGCTGGAGGGTCATGGCCACGCGGCGCTCACGCTGTTCGGGCTGACGT
TTTTCGTGGCGAACGTCGGCCCCAACTCGACCACCTTTGCGATGCCGTCG
CTGGTGTTTCCGGCGGCGGTACGCGGCTCGATGAACGGCGTGTCGGCGGC
CTGTGGCAAGCTCGGCGCGCTGCTGGGCGCCGCCGCCTTCGCCCCGCTGG
CTGACGCATGGGGCATCGGCCCTGTGCTGGTCCTGTGCGGGATCATTTCC
GCCGGCGGCGGCCTGCTGACGCTAGCCCTCGTGCCAACGACCGCCGGGAG
A
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