mRNA_P-wetherbeei_contig20352.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20352.1.1
Unique NamemRNA_P-wetherbeei_contig20352.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A7J4E016_9ARCH (Dipeptide epimerase (Fragment) n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A7J4E016_9ARCH)

HSP 1 Score: 189 bits (481), Expect = 5.990e-56
Identity = 103/243 (42.39%), Postives = 152/243 (62.55%), Query Frame = 1
Query:   10 VTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECR-PILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGV 735
            +   ++YR   + +KPF IA G     E  ++ +   +G  G GE  P   +T ET++  + A++  L P + G  P        +M+ V+ G+ +A+AALD+ALHDLAG++  +PV +LLGG    PI T+Y++G+  PEK A EA  +VE+G+  +K+KVG+DPE DV RV A+R+A+G  I +RIDAN+GWS   A +AL  MEP  ++LVEQP+   DL G   +R+R  IP+ ADE V
Sbjct:   21 IKKVQVYRFEFQLEKPFVIALGTIPSVEVAIVVIEDHKGRLGIGEGCPAKRITGETIDTVLGALK-VLAPTLIGEDPLRIGYLADKMDGVLSGNTAAKAALDIALHDLAGKILGVPVWKLLGGHTSDPISTDYTVGIDDPEKMAREAARLVEEGFREIKVKVGEDPERDVERVGAIRKAVGDRIVIRIDANQGWSPQEAVWALREMEPSRVQLVEQPVPHWDLEGLRYVRERSPIPVMADEAV 262          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A662FUT2_9CREN (Dipeptide epimerase n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662FUT2_9CREN)

HSP 1 Score: 189 bits (481), Expect = 4.600e-55
Identity = 98/244 (40.16%), Postives = 160/244 (65.57%), Query Frame = 1
Query:   10 VTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGVRD 741
            +T   +Y+  LR ++ F IA G S     L++++ + EG+ G GE+ P   +T++++E  + A+ + L P + G+ P   +  H ++ R + G+PS +AALD+A+HD+ G+   +PV +LLGG    I+T+ +IG+ +P++ A+ A ++VE G+  +KLKVG DP+EDV R+KAVR ++G DI +RIDAN+GWS+  A   L ++  ++I+L EQP+   DL G A +++R  IPI ADE V D
Sbjct:    3 ITKVEVYKVTLRYREVFRIALGASSRTTNLIVKIYTDEGMMGIGESCPSRRITHDSIETNLEAL-ELLAPKLIGVDPTRIEYIH-KLFRKLYGNPSIKAALDMAMHDIIGKAAGLPVYKLLGGFRSEIVTDITIGIKSPKEMAKAAVNLVEKGFRTLKLKVGVDPDEDVERIKAVRDSVGGDIAIRIDANQGWSVREAIDVLNKVYRYDIQLCEQPVKYNDLEGMARVKERSPIPIMADESVHD 244          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A7C4H377_9BACT (Dipeptide epimerase n=2 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C4H377_9BACT)

HSP 1 Score: 189 bits (480), Expect = 1.020e-54
Identity = 99/234 (42.31%), Postives = 152/234 (64.96%), Query Frame = 1
Query:   37 RLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGE-CRPILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGV 735
            R   ++PF IA G +     +++ L  + G  GWGEA P   +   T +  ++A+   L P + G  P   +    +M+RV+ G+ +A+AALDLALHDL G+++  PV  LLGG    P+ T++++G+ +P + A EA+++VE G+ A+K+KVG+DP+ DV RV+AVR+AIG ++++ IDAN+GW+   A +ALTRM  + +E VEQP+   DL G A +R+R  IPI ADE V
Sbjct:   17 RFSLERPFRIALGTTTEKTEVIVALHDNHGRVGWGEASPSAVILGCTPDSVLAAL-DHLIPVLLGEDPRRIRHLVDKMDRVLLGNAAAKAALDLALHDLVGQIYGEPVWRLLGGSLAEPVETDFTVGIDSPARMAAEAKALVEAGFRAIKVKVGEDPKADVERVRAVREAIGENVRMWIDANQGWTRAQAVWALTRMSEYGVEFVEQPVAAEDLEGMAWVRKRSPIPIMADESV 249          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A7V0MW61_9BACT (Dipeptide epimerase n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7V0MW61_9BACT)

HSP 1 Score: 189 bits (479), Expect = 1.090e-54
Identity = 102/247 (41.30%), Postives = 151/247 (61.13%), Query Frame = 1
Query:    1 MATVTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECR--PILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGV 735
            M+TV    ++R R    KPF IA G     E +++ ++   G  GWGE  P   +   T +  ISA+   L P I G  P   +    RM++ + G+  A+AALD+ALHDL GR++  PV  LLGG CR  P+ T++++ +  PE+ A EA+ +V +G+  +K+KVG+DP  DV RV+ +R+A+G ++ LRIDAN+GW+   A +AL+RM    IE VEQP+   D+ G A +R+R  IP+ ADE V
Sbjct:    1 MSTVERIEVFRFRFPLAKPFTIALGSVSEVEEIIVRVVDDAGYEGWGEGSPSRRILAATADTIISAL-DVLAPLILGEDPRRLEHLVDRMDQALEGNSPAKAALDIALHDLVGRIYGEPVWRLLGG-CRAEPVETDFTVSIDAPERMAAEAKRLVGEGFRTIKVKVGEDPVRDVERVRRIREAVGEEVALRIDANQGWTRAEAVWALSRMAELGIEFVEQPVAAWDIEGLAWVRRRSPIPVMADESV 245          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A497M575_9ARCH (Dipeptide epimerase (Fragment) n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497M575_9ARCH)

HSP 1 Score: 188 bits (477), Expect = 1.770e-54
Identity = 94/237 (39.66%), Postives = 157/237 (66.24%), Query Frame = 1
Query:   25 LYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGV 735
            +YR  L   +PF IA G S   E +++++ +  GV GWGEA P   +T ET E  + A+ + + P + G+ P+  ++   +M+ +V G+ SA+AA+D+A+ D+ G+  + PV+ LLGG    +LT+ +IG+ +PE+ A+ A   ++ G+  +K+KVG +P EDV R++ VR+A+G +IK+RIDAN+GW+   A   + ++E +++EL+EQP+   DL+G AT+R+  +IPI ADE V
Sbjct:    5 VYRVSLAYAEPFRIALGTSVKSENIIVKVQTDFGVEGWGEASPSFKITNETPETVVDALTK-MGPELIGMCPFKVEQIIEKMDEIVNGNTSAKAAIDMAIFDVIGKKTRKPVSALLGGYRDEVLTDITIGIKSPEEMAKSAVKYIKKGFKILKVKVGVNPSEDVERIRRVREAVGSEIKIRIDANQGWTPKEAVEVINKIEKYDVELIEQPVKAEDLKGLATVRKNSSIPIMADESV 240          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A0K9H9H6_9BACI (Dipeptide epimerase n=2 Tax=Bacillus TaxID=1386 RepID=A0A0K9H9H6_9BACI)

HSP 1 Score: 187 bits (475), Expect = 4.010e-54
Identity = 93/246 (37.80%), Postives = 151/246 (61.38%), Query Frame = 1
Query:   10 VTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSI-GLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGW-SLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGVRD 741
            +    L+   L  K PF I+    D    ++L+L +  G+ GWGEAVP  ++T E    CI  +R  L PA+ G  P+  +  H +MN+ +  +P+A+AA+D+A +DL G+   +PV +L+GG+    LT   +  +  PE  AE+A++ ++ G+H++KLKVG D + DV+R++AVR A+G D+ +RID N+GW +   A  AL ++EP  +  VEQP+   D+ G A ++Q C IP+ ADE +++
Sbjct:    3 IVKAELFGIHLPLKSPFIISYATFDSMPSVILKLETDTGLIGWGEAVPDEHVTGENFYSCIEVLRHILLPAVLGEHPFQIEHLHHKMNQAITANPAAKAAIDIACYDLMGKAAGLPVYDLIGGKSHTELTYPKVLSIEEPEVMAEKAQAAIQSGFHSLKLKVGLDTQMDVKRIQAVRAAVGFDVPIRIDVNQGWHTYTAAIQALKQLEPLQLAWVEQPIRMGDIDGLAQIKQHCTIPLMADESIQN 248          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A2K1P2K4_9BACT (Dipeptide epimerase n=1 Tax=Petrotoga sp. 9PWA.NaAc.5.4 TaxID=1434328 RepID=A0A2K1P2K4_9BACT)

HSP 1 Score: 185 bits (470), Expect = 1.560e-53
Identity = 90/244 (36.89%), Postives = 152/244 (62.30%), Query Frame = 1
Query:   10 VTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGVRD 741
            + D    R R++  KPF I+ G+S  C+ ++L++ +  G  G+GEA P   +T ET+E  +  + +F    + G  P + +  H  M++ + G+ +A+AA+D+AL+D+ G++  +P+ ++LGG    + T+ +IG+ TP++ A+EA+  VE G+  +K+K G D +ED+  VK +R+ +G DIKL+IDAN+GWS+         +E ++IE++EQPL   DL G A LR + NI I  DE V +
Sbjct:    3 IIDLNFKRVRIKLLKPFVISRGISQYCDSVILKIKTDVGYYGYGEATPSKSVTGETIESVLITL-EFFKELVMGEDPLAIERVHDIMDKAIIGNTAAKAAIDIALYDIKGKVMSVPLYKVLGGFDNKVQTDITIGIGTPKEMAQEAKERVEQGFKILKIKTGRDSKEDIEAVKLIRETVGNDIKLKIDANQGWSVSDTIKVAKAVEKYDIEVIEQPLAYWDLEGLAFLRNKINIKIMPDETVHN 245          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: UPI00166304D6 (dipeptide epimerase n=1 Tax=Ornithinibacillus halotolerans TaxID=1274357 RepID=UPI00166304D6)

HSP 1 Score: 184 bits (468), Expect = 3.030e-53
Identity = 95/242 (39.26%), Postives = 149/242 (61.57%), Query Frame = 1
Query:   10 VTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGV 735
            +T+ ++ + +L   KPF +A G  +  E LL+++ + EG+ G GE  P  Y+T ETLE  IS   Q L   I G  P + +  H  M+R + G+ +A+AALD+AL DL G+    P+ ++LGG      T+ +IG+ TPE  A EA+  V  G+  +K+K G +PE+D+  V  +R+A+GP I+LR+DAN+GW++  A   +  +E + +E VEQPL   D+ G A +RQ+ ++P+ ADE V
Sbjct:    3 ITNIKVEKLKLELFKPFTVALGTIENVETLLVKVETDEGIYGIGEGAPFEYVTGETLETAISTA-QLLGNRIIGQNPLNIEVIHELMDRTIVGNTAAKAALDIALFDLKGKYMNAPLYQVLGGYSNSFQTDVTIGINTPETMANEAKERVAQGFSILKIKAGLNPEQDIEAVARIREAVGPSIRLRMDANQGWTVADAVKVINTVERYQVEAVEQPLPFWDIDGMAYVRQKVSLPVMADESV 243          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A497JJD4_9ARCH (Dipeptide epimerase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497JJD4_9ARCH)

HSP 1 Score: 185 bits (469), Expect = 3.560e-53
Identity = 93/242 (38.43%), Postives = 153/242 (63.22%), Query Frame = 1
Query:   10 VTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSIGLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIGATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGV 735
            +    +Y  RL  ++PF IA G S     +++ +I+   V GWGEA P   +T ET +  I A+ + + P + G+ P   ++    M+++V G+ SA+AA+D+AL+D+ G++ + P+  +LGG    + T++++G+ +PE+ A++A   VE G+ A+K+KVG DPEEDV RV  +R A+G +I +RIDAN+GW+   A   L ++E +N+E  EQP+   D+ G A +R+  NIP+ ADE V
Sbjct:    3 IKAIHVYSARLPYREPFRIALGTSIESHNIIVHVITDFEVDGWGEASPSQRITGETPQTVIEALDR-IAPKLIGMCPLRIEQDIEAMDKIVAGNTSAKAAIDMALYDILGKVARRPLYRVLGGYRTKVFTDFTLGIKSPEEMAKDAVKAVEHGFKALKVKVGIDPEEDVERVAKIRDAVGSEIAIRIDANQGWTPEQAVKTLRKLERFNVEFAEQPVKADDIEGLAHVRRNSNIPVMADETV 243          
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Match: A0A0C2UFA4_BACBA (Dipeptide epimerase n=4 Tax=Bacillus badius TaxID=1455 RepID=A0A0C2UFA4_BACBA)

HSP 1 Score: 184 bits (468), Expect = 4.430e-53
Identity = 90/246 (36.59%), Postives = 153/246 (62.20%), Query Frame = 1
Query:   10 VTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAVPLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSARAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSI-GLCTPEKAAEEARSIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIG-ATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGVRD 741
            +T   LY   L  K PF ++    D    ++++L +  G+ GWGEAVP  ++T E   GCI  +++ L PA+ G  P+  +  H +MN+ +  +P+A+AA+D+A +DL G+   +PV +L+GG     LT   +  +  PE  AE+A + +++G+ ++KLKVG DP+ DV+R++AVR+A+G D+ +R+D N+GW     A  A+ ++E   +  +EQPL   D+ G A L+++C IP+ ADE +++
Sbjct:    3 ITKAELYGIHLPLKTPFIVSYATFDYMPSIIVKLETDSGLIGWGEAVPDDHVTAENFYGCIEVLKRVLLPAVLGENPFRIEHIHHKMNQAIIANPAAKAAVDIACYDLMGKAAGLPVYDLIGGRSHDELTYPKVLSIEEPEVMAEKALAAIQNGFQSLKLKVGTDPQLDVKRIQAVREAVGLDVPIRVDVNQGWHKYDVAIQAMKQLEEVQLSWLEQPLRIGDIDGLAQLKRQCTIPLMADESIQN 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20352.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J4E016_9ARCH5.990e-5642.39Dipeptide epimerase (Fragment) n=1 Tax=Candidatus ... [more]
A0A662FUT2_9CREN4.600e-5540.16Dipeptide epimerase n=1 Tax=Thermoprotei archaeon ... [more]
A0A7C4H377_9BACT1.020e-5442.31Dipeptide epimerase n=2 Tax=Candidatus Acetothermi... [more]
A0A7V0MW61_9BACT1.090e-5441.30Dipeptide epimerase n=1 Tax=Candidatus Acetothermi... [more]
A0A497M575_9ARCH1.770e-5439.66Dipeptide epimerase (Fragment) n=1 Tax=Candidatus ... [more]
A0A0K9H9H6_9BACI4.010e-5437.80Dipeptide epimerase n=2 Tax=Bacillus TaxID=1386 Re... [more]
A0A2K1P2K4_9BACT1.560e-5336.89Dipeptide epimerase n=1 Tax=Petrotoga sp. 9PWA.NaA... [more]
UPI00166304D63.030e-5339.26dipeptide epimerase n=1 Tax=Ornithinibacillus halo... [more]
A0A497JJD4_9ARCH3.560e-5338.43Dipeptide epimerase n=1 Tax=Candidatus Bathyarchae... [more]
A0A0C2UFA4_BACBA4.430e-5336.59Dipeptide epimerase n=4 Tax=Bacillus badius TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20352contigP-wetherbeei_contig20352:490..1230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1226325.HMPREF1548_07002
PFAMsMR_MLE_C,MR_MLE_N
Model size741
Max annot lvl186801|Clostridia
KEGG rclassRC03309
KEGG koko:K19802
KEGG ReactionR10938
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.39e-54
EggNOG OGsCOG4948@1|root,COG4948@2|Bacteria,1TQMS@1239|Firmicutes,25DGF@186801|Clostridia,36FGS@31979|Clostridiaceae
EC5.1.1.20
Descriptionmandelate racemase muconate lactonizing
Cds size741
COG categoryM
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.275462-CDS-P-wetherbeei_contig20352:489..12301683186197.275462-CDS-P-wetherbeei_contig20352:489..1230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20352 490..1230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20352.1.1prot_P-wetherbeei_contig20352.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20352 490..1230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20352.1.1

>prot_P-wetherbeei_contig20352.1.1 ID=prot_P-wetherbeei_contig20352.1.1|Name=mRNA_P-wetherbeei_contig20352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=247bp
MATVTDFRLYRTRLRCKKPFHIASGVSDVCEGLLLELISSEGVSGWGEAV
PLPYLTYETLEGCISAIRQFLFPAIQGIAPWSFQEAHARMNRVVCGHPSA
RAALDLALHDLAGRLFKIPVAELLGGECRPILTNYSIGLCTPEKAAEEAR
SIVEDGYHAVKLKVGDDPEEDVRRVKAVRQAIGPDIKLRIDANEGWSLIG
ATYALTRMEPWNIELVEQPLDRRDLRGSATLRQRCNIPITADEGVRD
back to top

mRNA from alignment at P-wetherbeei_contig20352:490..1230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20352.1.1 ID=mRNA_P-wetherbeei_contig20352.1.1|Name=mRNA_P-wetherbeei_contig20352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig20352:490..1230+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACCGTAACCGATTTTCGCCTTTATCGCACCCGGCTTCGCTGCAA GAAGCCTTTCCACATCGCCTCGGGGGTTTCCGACGTGTGCGAAGGTCTTT TGCTCGAGCTCATAAGCTCCGAAGGCGTATCGGGTTGGGGAGAGGCTGTC CCCCTCCCCTATCTCACTTACGAGACGTTGGAAGGCTGCATCTCGGCCAT CCGCCAATTTCTTTTCCCGGCCATCCAAGGCATCGCACCCTGGTCTTTCC AGGAAGCCCACGCTCGCATGAATCGGGTCGTGTGCGGCCATCCTTCGGCC CGCGCGGCCCTAGATCTCGCGCTGCACGATTTGGCAGGACGCCTATTCAA GATTCCCGTGGCCGAGCTTCTCGGCGGGGAGTGCCGCCCGATCTTGACCA ATTACAGCATCGGCCTGTGCACGCCCGAGAAGGCCGCCGAAGAGGCCCGT TCCATCGTGGAAGACGGCTACCACGCTGTAAAGCTCAAGGTCGGCGACGA TCCCGAAGAGGATGTGCGCCGCGTCAAAGCCGTGCGCCAGGCGATCGGGC CCGATATTAAACTGCGCATCGACGCCAACGAGGGCTGGAGCCTCATCGGG GCCACCTATGCACTGACCCGCATGGAACCCTGGAATATTGAGCTCGTCGA ACAGCCGCTCGATCGCCGCGACCTGCGCGGCTCGGCCACGCTGCGCCAGC GCTGCAACATTCCCATCACGGCCGACGAGGGCGTGCGCGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20352:490..1230+

>mRNA_P-wetherbeei_contig20352.1.1 ID=mRNA_P-wetherbeei_contig20352.1.1|Name=mRNA_P-wetherbeei_contig20352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig20352:490..1230+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACCGTAACCGATTTTCGCCTTTATCGCACCCGGCTTCGCTGCAA
GAAGCCTTTCCACATCGCCTCGGGGGTTTCCGACGTGTGCGAAGGTCTTT
TGCTCGAGCTCATAAGCTCCGAAGGCGTATCGGGTTGGGGAGAGGCTGTC
CCCCTCCCCTATCTCACTTACGAGACGTTGGAAGGCTGCATCTCGGCCAT
CCGCCAATTTCTTTTCCCGGCCATCCAAGGCATCGCACCCTGGTCTTTCC
AGGAAGCCCACGCTCGCATGAATCGGGTCGTGTGCGGCCATCCTTCGGCC
CGCGCGGCCCTAGATCTCGCGCTGCACGATTTGGCAGGACGCCTATTCAA
GATTCCCGTGGCCGAGCTTCTCGGCGGGGAGTGCCGCCCGATCTTGACCA
ATTACAGCATCGGCCTGTGCACGCCCGAGAAGGCCGCCGAAGAGGCCCGT
TCCATCGTGGAAGACGGCTACCACGCTGTAAAGCTCAAGGTCGGCGACGA
TCCCGAAGAGGATGTGCGCCGCGTCAAAGCCGTGCGCCAGGCGATCGGGC
CCGATATTAAACTGCGCATCGACGCCAACGAGGGCTGGAGCCTCATCGGG
GCCACCTATGCACTGACCCGCATGGAACCCTGGAATATTGAGCTCGTCGA
ACAGCCGCTCGATCGCCGCGACCTGCGCGGCTCGGCCACGCTGCGCCAGC
GCTGCAACATTCCCATCACGGCCGACGAGGGCGTGCGCGAC
back to top