mRNA_P-wetherbeei_contig2035.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2035.2.1
Unique NamemRNA_P-wetherbeei_contig2035.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: K3WAS9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAS9_GLOUD)

HSP 1 Score: 100 bits (250), Expect = 3.830e-22
Identity = 68/170 (40.00%), Postives = 92/170 (54.12%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPD-RFRPSDG-------ELRGETDPEGA-----------HFRRVQEAWEALRDESARRKYDAWLAEQT-------RSVAVADELALADM----IYSDHDG---VYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAV 423
            SHY  L +  ++S  EIRRAY   AR++HPD R  P          E R ET  E              F R+QEA+E LRD   R +YD  +A++          V +ADE+++ADM    ++ D +G   +Y H CRCGDV+E+AE E++ D V+V  CNGCSL I V
Sbjct:    3 SHYEALDVHPKSSLEEIRRAYHRAARQHHPDKRSAPXXXXXXAAVVETRVETGTEATIVADGAIASDHRFLRIQEAYETLRDAEKRAQYDNKIAQEEVLRKRDGEDVRIADEVSVADMTKEVLHDDENGDEVIYSHQCRCGDVYEIAEDELL-DGVDVAPCNGCSLNIRV 171          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: A0A662WQB1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQB1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.650e-22
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   10 RSHYAVLSISDQASAGEIRRAYQALARKYHPDRFRPS-----------DGELRGE--TDPEGAH-FRRVQEAWEALRDESARRKYDAWLAE-------QTRSVAVADELALADM---IYSDHDG-----VYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAV 423
            RS+Y VL ++   +A +IRRAY   AR+YHPD+   S            GE  G   T+  G H F RVQEA+E LR    R +YDA LA        +   V V+DE+A+ DM   +    DG     ++ H CRCGD++E+ E E++G  V+++ C GCSL+I V
Sbjct:    3 RSYYEVLDVTADCTADDIRRAYHLAARRYHPDKRTASAAAYNGGHPHAGGEQDGSSLTNNSGYHQFLRVQEAYETLRHAELREQYDANLARDEMREKREQEVVVVSDEIAVDDMRREVLEGEDGESDEVLFTHQCRCGDLYEITEEEVMGG-VDIVPCTGCSLHIRV 168          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: A0A6B2LQ26_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQ26_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 4.800e-21
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPDRFRPSDGELRGETDPEGAHFRRVQEAWEALRDESARRKYDAWLAEQTRS--VAVADELALADMIYSDHDGVYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAVS 426
            S YAVL +   AS  EI+R+Y+AL+ +YHPD+    D E           F ++Q+AWE LRD  +R+ YD  L  Q       +++E+ L DM     D  + H CRCGD + L   ++  D + VI CNGCSL+I VS
Sbjct:    2 SFYAVLGVEPSASLEEIKRSYRALSLQYHPDKLTTKDDES----------FTKIQQAWETLRDAPSRQLYDQALQVQAMKGEAKISEEIDLDDMNQEAED-TFTHPCRCGDKYILTTTDMDND-INVIQCNGCSLFIKVS 129          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: A0A3R7KH33_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KH33_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.200e-20
Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = 1
Query:   19 YAVLSISDQASAGEIRRAYQALARKYHPDRFRPSDGELRGETDPEGAHFRRVQEAWEALRDESARRKYDAWLAE-------QTRSVAVADELALADM---IYSDHDG-----VYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAV 423
            Y VL +S   SA +IRRAY   ARKYHPD+   +       +  +   F +VQEA+E LR+   R++YDA + +       +   + V+D +AL DM   +    DG     ++ H CRCGD++E++E E++ D V+V+ C GCSL+I V
Sbjct:   73 YEVLGVSVDCSADDIRRAYHQAARKYHPDKRTTASSGHEDSSAHDVQQFLQVQEAYETLRNADLRQQYDAKMTQDELNRKREEEVIVVSDIIALNDMQREVIGSEDGEDDEVLFTHQCRCGDLYEISEGELL-DGVDVVPCTGCSLHIRV 221          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: A0A662XJB9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJB9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.330e-20
Identity = 63/169 (37.28%), Postives = 90/169 (53.25%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPDRF----------RPSDGELRGETDPEGA-------HFRRVQEAWEALRDESARRKYDAWLAE-------QTRSVAVADELALADM---IYSDHDG-----VYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAV 423
            S+Y VL ++   +A +IRRAY   AR+YHPD+           RP  G   GE +  G         F +VQEA+E LR    R +YDA LA        +   V V+DE+A+ DM   +    DG     ++ H CRCGD++E+ E E++G  V+++ C GCSL+I V
Sbjct:    4 SYYEVLDVAADCTADDIRRAYHLAARRYHPDKRTAPAASHNGGRPHAG---GEQNDSGLTHNSACHQFLQVQEAYETLRHAELREQYDATLARDELREKREQEVVVVSDEVAVDDMRREVLEGEDGESDEVLFTHQCRCGDLYEITEEELMGG-VDIVPCTGCSLHIRV 168          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: A0A1Q3F2I2_CULTA (Putative dnaj molecular chaperone similarity domain protein (Fragment) n=1 Tax=Culex tarsalis TaxID=7177 RepID=A0A1Q3F2I2_CULTA)

HSP 1 Score: 94.0 bits (232), Expect = 8.880e-20
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPDRFRPSDGELRGETDPEGAHFRRVQEAWEALRDESARRKYDAWLAEQT--RSVAVADELALADMIYSDHDGVYRHGCRCGDVFELAEPEIVG---DCVEVIGCNGCSLYIAVSS 429
            SHY VL+++  AS  EIRRAYQALA ++HPD+          +T+     F R+ EAW+ LRDE +RR YDA L + T      V + L  A+  + + +  Y H CRCG ++ L  P+ +G   +C   IGC+ CSL + V++
Sbjct:   19 SHYEVLNVAQDASLDEIRRAYQALALRFHPDKRLSHPKSEESDTNDS---FIRIDEAWKVLRDEQSRRVYDAELMQSTCREEYFVNETLTRAEFRHEEEEDYYYHTCRCGGLYVL--PDNLGPDENCY--IGCDECSLVVQVNA 155          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: Q17MM8_AEDAE (AAEL000936-PA n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q17MM8_AEDAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.520e-19
Identity = 56/143 (39.16%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPDRFRPSDGELRGETDPEGA-HFRRVQEAWEALRDESARRKYDAWLAEQT--RSVAVADELALADMIYSDHDGVYRHGCRCGDVFELAEPEIVG-DCVEVIGCNGCSLYIAVSS 429
            SHY +L+++  A+  EIRR+YQ LA ++HPD+    +  +  E     A  F R+ EAW+ LRDE ARR YDA L ++T      V + L  AD  +   +  Y H CRCG ++ L  PE +G D    I C+ CSL + V++
Sbjct:   16 SHYQILNVAPDATLDEIRRSYQLLALRFHPDKLSLQNCSIAQEESAASADQFIRIDEAWKVLRDEEARRVYDAELMQRTCREEYFVNEVLRRADFRHEQEEDYYYHTCRCGGLYVL--PENLGADESCYIACDECSLVVQVNA 156          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: A0A182H9W6_AEDAL (Uncharacterized protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H9W6_AEDAL)

HSP 1 Score: 91.7 bits (226), Expect = 4.620e-19
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPDRFRPSDGELRGETDPEGA-HFRRVQEAWEALRDESARRKYDAWLAEQT--RSVAVADELALADMIYSDHDGVYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAV 423
            SHY VL ++  A+  EIRR+YQ+LA + HPD+ +  D   +G+++      F R+ EAW+ LRDE ARR YDA L ++T      V + L   D  +   + +Y H CRCG  + L E ++ GD    I C+ CSL + V
Sbjct:    2 SHYQVLDVAPDATLEEIRRSYQSLALRLHPDKVK-CDPTTQGQSEQLTTDQFIRIDEAWKVLRDEEARRVYDAELMQRTCREEYFVNEVLRRTDFRHDPEEDIYYHACRCGGYYVLPE-QMGGDESCYIACDECSLVVQV 139          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: B0XF44_CULQU (Zinc finger n=5 Tax=Culex pipiens complex TaxID=518105 RepID=B0XF44_CULQU)

HSP 1 Score: 91.7 bits (226), Expect = 5.700e-19
Identity = 58/144 (40.28%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPDR--FRPSDGELRGETDPEGAHFRRVQEAWEALRDESARRKYDAWLAEQT--RSVAVADELALADMIYSDHDGVYRHGCRCGDVFELAEPEIVG-DCVEVIGCNGCSLYIAVSS 429
            SH  VL+++  AS  EIRRAYQALA ++HPD+    P+  E           F R+ EAW+ LRD+ ARR YDA L + T      V + L  A+  + + +G Y H CRCG ++ L  P+ +G D    IGC+ CSL + V++
Sbjct:   13 SHLQVLNVAQNASFDEIRRAYQALALRFHPDKRLSHPAPEEPNSNDS-----FIRIDEAWKVLRDDQARRVYDAELMQSTCREEYFVNETLTRAEFRHEEEEGYYYHTCRCGGLYVL--PDGLGPDESCYIGCDECSLVVQVNA 149          
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Match: A0A182MI08_9DIPT (Uncharacterized protein n=1 Tax=Anopheles culicifacies TaxID=139723 RepID=A0A182MI08_9DIPT)

HSP 1 Score: 90.9 bits (224), Expect = 1.080e-18
Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   13 SHYAVLSISDQASAGEIRRAYQALARKYHPDRFRPSDGELRGETDPEGAHFRRVQEAWEALRDESARRKYDAWLAEQTRSVAVADELALADMIYSDHDGVYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAVS 426
            SHY VL I+  A+  EIR++YQALA KYHPD+ +    E       E  HF  +  AW+ LRD+  RR YDA L +QT  + V + L  AD    +      H CRCG  + L E     + + V  C+ CSL + V+
Sbjct:   13 SHYDVLQIAHDATLEEIRKSYQALALKYHPDKRKSHPPECN-----ESDHFIHIDRAWKTLRDDRLRRIYDAELMQQTEEIFVNEVLTDADFERDEEGSFSFHTCRCGGYYILPEESSNHEPIYV-SCDECSLVVQVN 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2035.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WAS9_GLOUD3.830e-2240.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662WQB1_9STRA7.650e-2239.52Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6B2LQ26_9EUKA4.800e-2140.00Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A3R7KH33_9STRA5.200e-2038.00Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A662XJB9_9STRA5.330e-2037.28Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1Q3F2I2_CULTA8.880e-2039.58Putative dnaj molecular chaperone similarity domai... [more]
Q17MM8_AEDAE3.520e-1939.16AAEL000936-PA n=1 Tax=Aedes aegypti TaxID=7159 Rep... [more]
A0A182H9W6_AEDAL4.620e-1939.29Uncharacterized protein n=3 Tax=Aedes albopictus T... [more]
B0XF44_CULQU5.700e-1940.28Zinc finger n=5 Tax=Culex pipiens complex TaxID=51... [more]
A0A182MI08_9DIPT1.080e-1839.13Uncharacterized protein n=1 Tax=Anopheles culicifa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2035contigP-wetherbeei_contig2035:3443..4399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.6545
PFAMsDnaJ,zf-CSL
Model size957
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.79e-23
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota,3QFYI@4776|Peronosporales
Ec32 ortholog descriptionHSP40/DnaJ and Zinc finger domain protein
Ec32 orthologEc-11_003620.1
DescriptionCSL zinc finger
Cds size459
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.1750433-CDS-P-wetherbeei_contig2035:3442..39011683186197.1750433-CDS-P-wetherbeei_contig2035:3442..3901Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2035 3443..3901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.1868134-UTR-P-wetherbeei_contig2035:3901..43991683186197.1868134-UTR-P-wetherbeei_contig2035:3901..4399Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2035 3902..4399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2035.2.1prot_P-wetherbeei_contig2035.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2035 3443..3901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2035.2.1

>prot_P-wetherbeei_contig2035.2.1 ID=prot_P-wetherbeei_contig2035.2.1|Name=mRNA_P-wetherbeei_contig2035.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MDRRSHYAVLSISDQASAGEIRRAYQALARKYHPDRFRPSDGELRGETDP
EGAHFRRVQEAWEALRDESARRKYDAWLAEQTRSVAVADELALADMIYSD
HDGVYRHGCRCGDVFELAEPEIVGDCVEVIGCNGCSLYIAVSSGPSGSGH
DR*
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mRNA from alignment at P-wetherbeei_contig2035:3443..4399+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2035.2.1 ID=mRNA_P-wetherbeei_contig2035.2.1|Name=mRNA_P-wetherbeei_contig2035.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig2035:3443..4399+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGACGGAGCCACTACGCCGTGCTGAGTATCTCCGACCAGGCGTC CGCGGGCGAGATCCGCAGGGCCTACCAGGCCTTGGCGAGGAAGTACCACC CAGATCGGTTCCGACCGTCGGATGGCGAACTGCGAGGTGAGACAGACCCA GAGGGAGCCCACTTCCGACGCGTGCAAGAGGCGTGGGAGGCGCTACGTGA CGAGTCGGCCCGACGAAAGTACGACGCGTGGTTGGCGGAACAAACCAGAT CGGTCGCTGTGGCCGACGAACTCGCGCTCGCGGACATGATTTACAGCGAT CACGACGGCGTGTATCGACACGGCTGTCGTTGCGGCGATGTGTTTGAGCT CGCGGAGCCCGAGATCGTCGGCGACTGCGTCGAGGTGATTGGATGCAATG GGTGCAGCCTGTACATTGCCGTTTCTTCTGGTCCAAGCGGCAGTGGACAC GATAGATAACCCATGTATGAAGCTTATGAAAGGATACGCGATGCCTTTTT TTCTCTTCTCTTTCCAATTTGCTGAGAAAAGGAGAGAGTGGCATCGTAGG CAAGCCTCCCACACTTCTGCCCTCTGTTGATCTGCCGTGCACCACAGCGA CGCGACAGAGATAATGAACGAATGTAGCGCTTGCGCTAAACCTTCGTCCA GCGCCTTTACGTGTAGTATCACCTGCAGGCGCTAACCTCCACGAACACGA GCGGGGATGGCGGGGGCGGCGGCAGCAACGCCAGCGAGCGCGTTGAAGGC GCAGGCGGCGGCTGCGGCGGCGGCGGTTAAAGCGGAGCATGTCCTGCTAC CAGGAGGGCGGCAGCGGTGTGGCAGGGCTGCCTCCTTGCATCTGTAGGAC GCCGCCAACTCTTGGCCAATACAGCTTGTTTATGGGCGGAGCTGCGTCGT GTTGGCGTGGTGATTTAATTAGAAATCATGTCAGTGCACTGGCCTGACAA TTTCACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2035:3443..4399+

>mRNA_P-wetherbeei_contig2035.2.1 ID=mRNA_P-wetherbeei_contig2035.2.1|Name=mRNA_P-wetherbeei_contig2035.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig2035:3443..4399+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGACGGAGCCACTACGCCGTGCTGAGTATCTCCGACCAGGCGTC
CGCGGGCGAGATCCGCAGGGCCTACCAGGCCTTGGCGAGGAAGTACCACC
CAGATCGGTTCCGACCGTCGGATGGCGAACTGCGAGGTGAGACAGACCCA
GAGGGAGCCCACTTCCGACGCGTGCAAGAGGCGTGGGAGGCGCTACGTGA
CGAGTCGGCCCGACGAAAGTACGACGCGTGGTTGGCGGAACAAACCAGAT
CGGTCGCTGTGGCCGACGAACTCGCGCTCGCGGACATGATTTACAGCGAT
CACGACGGCGTGTATCGACACGGCTGTCGTTGCGGCGATGTGTTTGAGCT
CGCGGAGCCCGAGATCGTCGGCGACTGCGTCGAGGTGATTGGATGCAATG
GGTGCAGCCTGTACATTGCCGTTTCTTCTGGTCCAAGCGGCAGTGGACAC
GATAGATAA
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