mRNA_P-wetherbeei_contig20345.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20345.1.1
Unique NamemRNA_P-wetherbeei_contig20345.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: UPI0019C35434 (Response regulator n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019C35434)

HSP 1 Score: 245 bits (626), Expect = 8.070e-75
Identity = 135/264 (51.14%), Postives = 179/264 (67.80%), Query Frame = 1
Query:    1 ETISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVE--PAHWSGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYLAETRM-----DMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            ETI  DPTR+RQ+L+NL+GN  KFT +G++R+++ L  E   ++ TV D+GIG+ E  +  LF PF+QADTS TRR GGTGLGLAIS++L+  +GG I  +S+  VG+TFRFT+ TG L  V +++  P        QA  R    +L+GR VL+VDD  D+R L++SYL +AGA V  A +G AAL      R      D+V+LDMQMPVLDGY TAR LR      PI+A+TA+AM GDRE CL AGC+ YL+KPV R A++
Sbjct:  121 ETIEGDPTRMRQVLVNLVGNGIKFTDEGEVRVLVELHRERGELELTVSDTGIGMDEELQRRLFVPFNQADTSNTRRHGGTGLGLAISKRLVDAMGGRISAQSEPGVGSTFRFTVPTGPLGGVGMIDALPVRDPAPPGQAVAR----TLAGRTVLLVDDVSDVRNLLKSYLGDAGAQVVEAGDGAAALVAFEAMRREHRLPDVVLLDMQMPVLDGYDTARGLRSLGHAKPIIALTAAAMKGDRERCLDAGCDDYLTKPVSRDALL 380          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A5C6EDL8_9BACT (Aerobic respiration control sensor protein ArcB n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EDL8_9BACT)

HSP 1 Score: 237 bits (605), Expect = 1.910e-73
Identity = 131/260 (50.38%), Postives = 178/260 (68.46%), Query Frame = 1
Query:    1 ETISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPAHWSGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYLAE---TRMDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            E I++DP RLRQIL+NL+GNA KFT  G ++++   DA  +++ F V D+GIGI E  +  LF+PF QAD + TR FGGTGLGLAI R+L H LGG + ++S+   G TF  TI   +  +  L+EP      D QA  R     L+  KVLVVDDRRDIR+L Q ++E+AG TV TA NGQ A+D +     + + ++V+DMQMPV+DGYA  RELRRR   +PI+A+TA+AM  DR+ CLAAGC+ Y +KP+D +A++
Sbjct:  104 EAINTDPIRLRQILLNLVGNAIKFTDAGAVKVVCRYDAGPDVMIFDVIDTGIGIREQDQAQLFQPFVQADNTSTRSFGGTGLGLAICRRLAHALGGDVIMKSEYGKGNTFTLTINAAASGE--LIEPNLTL--DLQAPSRPEAIQLNA-KVLVVDDRRDIRYLAQHFIEKAGGTVVTATNGQEAIDLIYSDHPSSIQVIVMDMQMPVMDGYAATRELRRRGCQLPIIALTANAMKSDRDECLAAGCSDYTTKPLDSNALI 358          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A4Y6Q2D2_9DELT (Histidine kinase n=1 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q2D2_9DELT)

HSP 1 Score: 239 bits (611), Expect = 5.720e-72
Identity = 133/263 (50.57%), Postives = 173/263 (65.78%), Query Frame = 1
Query:    1 ETISSDPTRLRQILMNLLGNATKFTSQGQIRLMLT-LDAENELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPAHWSGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYLAETR-----MDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            ETI +DPTRLRQ+L+NL+GNA KFT  G + L +  +D     ++F V D+GIGI E  +  LFEPF+QADTSVTR FGGTGLGL I R+L+  LGG +EV+S    G+TF   + TGSLE VA+V P       +  + R PLP L  R VLVVDDR +IRFL + ++E AG  V T  NG+ A+  +A+        D VV+DMQMPV+DGY  +R LR+      I+A+TA+AM GDR+ CL AGCN Y+ KP+D   +V
Sbjct:  168 ETIETDPTRLRQVLVNLVGNAIKFTDDGHVVLKVDFIDEAQSQIRFRVIDTGIGISETHQRRLFEPFAQADTSVTREFGGTGLGLTICRRLVERLGGRLEVDSTLGEGSTFTVIMPTGSLENVAMVTPRKGITMPEPQSAR-PLPKLECR-VLVVDDRHEIRFLARYFIERAGGVVRTCANGKEAITCVAQAEKAGNPFDAVVMDMQMPVMDGYEASRRLRQEGYEGTIVALTANAMRGDRKKCLEAGCNGYVRKPIDGPCLV 428          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A517X8M9_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A517X8M9_9PLAN)

HSP 1 Score: 244 bits (622), Expect = 1.380e-71
Identity = 135/261 (51.72%), Postives = 181/261 (69.35%), Query Frame = 1
Query:    7 ISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENE--LVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPA--HWSGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYL--AETRMDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            I SDP RLRQIL+NL+GNA KFTS+G IRL+++ DA  E   +QF V D+GIGI + +   LF+ FSQ DTSVTR FGGTGLGLAIS +L  +LGG+IEV SQ   GTTF   I  G +E  +L++P   H +  DK  + +G  PSLS   VLVVDDRRDIR++V+ +L ++GA V +A++G  A++ +   E   DM++LDMQMP LDGY TA  LR      PI+A+TA AM GD   CLA+GC++++SKP++   ++
Sbjct:  578 IESDPKRLRQILVNLIGNAVKFTSEGSIRLVISYDASGEQPAIQFEVIDTGIGITDAQLSQLFQEFSQGDTSVTRAFGGTGLGLAISARLARMLGGSIEVHSQSGSGTTFTCKITAGLVESASLIQPQNKHKTSNDKPDS-QGSAPSLSCN-VLVVDDRRDIRYIVKQFLIKSGAQVESANDGLEAIERIKQGEKSYDMILLDMQMPRLDGYQTAERLRSLGFKRPIIALTADAMHGDMTRCLASGCDAFISKPINTKELI 836          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A2G1W541_9BACT (Hybrid sensor histidine kinase/response regulator n=2 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W541_9BACT)

HSP 1 Score: 239 bits (611), Expect = 4.360e-70
Identity = 126/261 (48.28%), Postives = 175/261 (67.05%), Query Frame = 1
Query:    1 ETISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPAHWSGEDKQAAIRGPLPSLS-GRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYLAETR---MDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            ETI +D  RLRQIL+NLLGNA KFT+ G++RL +  D  ++L+ F V D+G+GI   + + LFEPF+Q D++ TR +GGTGLGL I R+L H LGG I+V SQ   G+ F   +   +  K  LV+P      +    +  P P +     VLVVDDRRDIR+L Q ++E+AG+TV TA NGQ A+D++       +D++V+DMQMPV+DGY    ELRRR+  +PI+A+TA+AM  DRE CLAAGC  Y +KP+D+  ++
Sbjct:  568 ETIRTDAIRLRQILLNLLGNAIKFTNDGEVRLHIRYDERSKLLNFDVIDTGVGISPDKLDTLFEPFTQVDSTSTRSYGGTGLGLTICRRLSHALGGQIDVSSQPGKGSRFTLCLKVNASGK--LVQP----NLNSLPTVEKPQPEIQLSTSVLVVDDRRDIRYLAQHFIEKAGSTVYTATNGQEAIDFIESPDSPPVDLIVMDMQMPVMDGYEATTELRRRKCKLPIIALTANAMKSDREECLAAGCTDYTTKPLDQQKLI 822          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A7W5E0V7_9BACT (Two-component system CheB/CheR fusion protein n=3 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5E0V7_9BACT)

HSP 1 Score: 235 bits (600), Expect = 9.610e-70
Identity = 128/259 (49.42%), Postives = 181/259 (69.88%), Query Frame = 1
Query:    4 TISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPAHWSGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYL-AETR--MDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            T+++D  R+RQIL+NL+GNA KFT +G++ L++  D E  ++ F V D+GIGI     E LF+PF QAD + TR FGGTGLGLAI ++L H LGG ++VES+  VG+ F  +IA    + V L++P    G D  +  RG    LS R VLVVDDRRDIR+L Q ++E+AG  V TA NG+ A+D++ +ET+  +D++V+DMQMPV+DGY    ELR+R   +PI+A+TA+AM  DR+ACLAAGC  Y +KP++   ++
Sbjct:  390 TLNTDAIRVRQILVNLVGNAIKFTDEGKVELIVRFDQEASVLHFEVADTGIGIRSEDHESLFDPFVQADNTSTRSFGGTGLGLAICQRLAHALGGEVKVESEFGVGSVFTLSIAVA--KGVPLIKPD--LGLDIHSEQRGVEVELSAR-VLVVDDRRDIRYLAQHFIEKAGGEVLTATNGKEAIDFIESETKPDVDLIVMDMQMPVMDGYEATSELRKRGCTLPIIALTANAMKSDRDACLAAGCTDYTTKPLNSRKLI 643          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A3ZWS7_9BACT (Sensory box sensor histidine kinase/response regulator n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZWS7_9BACT)

HSP 1 Score: 238 bits (608), Expect = 1.430e-69
Identity = 130/259 (50.19%), Postives = 175/259 (67.57%), Query Frame = 1
Query:    7 ISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAE--NELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPAHWSGEDKQAAI--RGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYLAETRMDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            + +D  RL+Q+L+N++GNA KFT  G++R++  L+AE     + F V D+GIGIP+G+ E +F+PFSQAD+SVTRRFGGTGLGL ISR L  LLGG++  ES E +G+ F  T+  G+L   +  +PA    ED   A+     LPSLSG + LVVDD    R  +   LE AGA +  A+NGQ A+D +AE   D+++LDMQMPV+DGY  A  +R +    PI+AVTA AM GDRE CLAAGC+ YLSKP+ R  ++
Sbjct:  566 VLTDAPRLKQLLLNIVGNAIKFTQTGEVRIVARLEAEATRSRLIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNLAELLGGSLHAESVEGLGSKFTITVDAGNLTLSSEPKPA--PPEDAPTAMIHETKLPSLSGVQALVVDDGEANRRFISVVLEHAGANITMAENGQEAVDSIAEHTSDIILLDMQMPVMDGYVAAELIRFQGFTGPIIAVTAHAMQGDREKCLAAGCSGYLSKPLSREELL 822          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A5Q3L7R9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 10988 TaxID=2603660 RepID=A0A5Q3L7R9_9BACT)

HSP 1 Score: 242 bits (617), Expect = 1.870e-69
Identity = 129/263 (49.05%), Postives = 178/263 (67.68%), Query Frame = 1
Query:    4 TISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPAHW--SGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYLA-----ETRMDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            TI +DP RLRQIL+NL+GNA KFT++G I + + +  E E + F + D+GIGI E + E LFEPF+QAD+S +R FGGTGLGL ISR+L  +LGGTI V S  +VG+TF  T+ATGSL+ +  +EP+ +  S  +K+A    P   + G K+L+VDDRR++R L Q +L+EAGA V T  +GQ  L         +T  D++++DMQMP+LDGY T   LR     +PI+A+TA AM  DR+ CL AGCN Y +KP+D   ++
Sbjct: 1813 TIQTDPKRLRQILLNLVGNAIKFTNEGTITIGVEIKPEKEEILFEIIDTGIGIEEEQIESLFEPFTQADSSASRTFGGTGLGLPISRRLAQMLGGTIHVSSNVNVGSTFAVTVATGSLDGIEWIEPSEYEKSFREKRAY---PEQQIQG-KILIVDDRREVRHLAQHFLQEAGAEVVTVRDGQEVLKINETFGEIDTLFDLILIDMQMPILDGYQTVARLRELGSKLPIIAMTAHAMHSDRDKCLKAGCNDYTTKPLDPQELI 2071          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A518GD28_9BACT (Aerobic respiration control sensor protein ArcB n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518GD28_9BACT)

HSP 1 Score: 241 bits (615), Expect = 3.520e-69
Identity = 133/262 (50.76%), Postives = 175/262 (66.79%), Query Frame = 1
Query:    1 ETISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENELVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPAHWSGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYL-----AETRMDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            +TI SD  RL+QIL+NL+GNA KFT +G+I++ +  + + + +QF V D+GIGI + +   LF+PFSQ D SVTR FGGTGLGLAIS++L   LGG I V S   VG+TF   IATG +    LVE    S  D +  ++   PS     VL+VDDRRDIRFL +  L  AGATV   ++GQ A+D++     + T  D+V+LDMQMP+LDGY+TAR++R      PI+A+TA AM GD   CL AGCN YLSKP+D  AM+
Sbjct: 2356 KTIHSDAKRLKQILINLIGNAIKFTPKGRIQIRVRFNRQTQQLQFDVVDTGIGISDEQLPRLFKPFSQGDASVTRNFGGTGLGLAISQRLAETLGGRISVSSTAGVGSTFTIDIATGEIADSELVEYDE-SNSDVEEFLKLAPPSKLSCHVLIVDDRRDIRFLSKRILTGAGATVEECEDGQHAIDHITACFDSATCPDLVLLDMQMPILDGYSTARQMRALGFTGPIIALTADAMQGDMSKCLEAGCNDYLSKPIDAQAML 2616          
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Match: A0A2E2BWH3_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BWH3_9PLAN)

HSP 1 Score: 237 bits (605), Expect = 3.800e-69
Identity = 133/261 (50.96%), Postives = 178/261 (68.20%), Query Frame = 1
Query:    7 ISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENE--LVQFTVEDSGIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEVESQEDVGTTFRFTIATGSLEKVALVEPA--HWSGEDKQAAIRGPLPSLSGRKVLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYL--AETRMDMVVLDMQMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKPVDRSAMV 771
            I SDP  LRQIL+NL+GNA KFTS+G IRL+++ DA  E  ++QF V D+GIGI E +   LF+ FSQ DTSVTR FGGTGLGLAIS +L  +LGG IEV SQ  +GTTF   I+ G ++ V +V P   H S  D   ++    P+LS   VLVVDDRRDIR+LV+ +L ++GA V + ++G  A++ +   +   DM++LDMQMP LDGY TA  LR      PI+A+TA AM GD   CLA+GC+++LSKP++   ++
Sbjct:  578 IESDPKCLRQILVNLIGNAVKFTSRGSIRLVISYDASGECPVIQFDVIDTGIGITEAQLSQLFQEFSQGDTSVTRSFGGTGLGLAISARLARMLGGNIEVTSQPGIGTTFTCKISAGQVDSVPMVHPEKKHKSTPDTSKSL-DTQPALSCN-VLVVDDRRDIRYLVKQFLTKSGAEVESVNDGLEAIERVEQGQNSFDMILLDMQMPRLDGYQTAERLRSLGFNRPIIALTADAMHGDMNRCLASGCDAFLSKPINTKELI 836          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20345.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C354348.070e-7551.14Response regulator n=1 Tax=Deltaproteobacteria bac... [more]
A0A5C6EDL8_9BACT1.910e-7350.38Aerobic respiration control sensor protein ArcB n=... [more]
A0A4Y6Q2D2_9DELT5.720e-7250.57Histidine kinase n=1 Tax=Persicimonas caeni TaxID=... [more]
A0A517X8M9_9PLAN1.380e-7151.72Autoinducer 2 sensor kinase/phosphatase LuxQ n=10 ... [more]
A0A2G1W541_9BACT4.360e-7048.28Hybrid sensor histidine kinase/response regulator ... [more]
A0A7W5E0V7_9BACT9.610e-7049.42Two-component system CheB/CheR fusion protein n=3 ... [more]
A3ZWS7_9BACT1.430e-6950.19Sensory box sensor histidine kinase/response regul... [more]
A0A5Q3L7R9_9BACT1.870e-6949.05Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A518GD28_9BACT3.520e-6950.76Aerobic respiration control sensor protein ArcB n=... [more]
A0A2E2BWH3_9PLAN3.800e-6950.96Uncharacterized protein n=5 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20345contigP-wetherbeei_contig20345:157..930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog344747.PM8797T_15416
PFAMsHATPase_c,HisKA,PAS_3,PAS_4,Response_reg
Model size774
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.5e-72
EggNOG OGsCOG0642@1|root,COG2202@1|root,COG2202@2|Bacteria,COG2205@2|Bacteria,2J1UU@203682|Planctomycetes
DescriptionHistidine kinase
Cds size774
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186197.0115247-CDS-P-wetherbeei_contig20345:156..9301683186197.0115247-CDS-P-wetherbeei_contig20345:156..930Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20345 157..930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20345.1.1prot_P-wetherbeei_contig20345.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20345 157..930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20345.1.1

>prot_P-wetherbeei_contig20345.1.1 ID=prot_P-wetherbeei_contig20345.1.1|Name=mRNA_P-wetherbeei_contig20345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
ETISSDPTRLRQILMNLLGNATKFTSQGQIRLMLTLDAENELVQFTVEDS
GIGIPEGRKEHLFEPFSQADTSVTRRFGGTGLGLAISRQLIHLLGGTIEV
ESQEDVGTTFRFTIATGSLEKVALVEPAHWSGEDKQAAIRGPLPSLSGRK
VLVVDDRRDIRFLVQSYLEEAGATVGTADNGQAALDYLAETRMDMVVLDM
QMPVLDGYATARELRRRRDMVPILAVTASAMTGDREACLAAGCNSYLSKP
VDRSAMVH
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mRNA from alignment at P-wetherbeei_contig20345:157..930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20345.1.1 ID=mRNA_P-wetherbeei_contig20345.1.1|Name=mRNA_P-wetherbeei_contig20345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig20345:157..930+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACCATCTCCTCGGATCCGACGCGTCTACGTCAGATTCTCATGAATTT GCTAGGAAACGCCACCAAGTTCACGTCGCAAGGACAGATCCGGCTGATGC TGACACTCGACGCCGAGAACGAGTTGGTGCAGTTCACCGTAGAAGACAGC GGCATCGGCATCCCCGAAGGCCGCAAGGAGCATCTCTTCGAGCCCTTCAG CCAGGCCGATACTTCGGTCACGCGGCGCTTCGGCGGCACAGGTCTCGGGT TGGCCATCAGCCGCCAGCTGATTCATCTCCTGGGCGGCACCATCGAGGTT GAGAGCCAGGAGGACGTGGGCACCACGTTCCGCTTTACCATCGCGACGGG GTCGCTCGAAAAAGTTGCGCTGGTGGAGCCTGCGCACTGGAGCGGAGAGG ATAAGCAGGCCGCTATTCGTGGTCCTTTGCCGAGTCTGAGCGGCCGCAAA GTCCTGGTCGTGGACGATCGCCGCGATATCCGCTTTCTGGTCCAGAGCTA TTTGGAAGAGGCCGGCGCCACGGTAGGCACCGCCGATAACGGTCAAGCGG CGCTGGACTACTTAGCAGAAACCAGGATGGATATGGTCGTCCTGGACATG CAGATGCCCGTTTTGGACGGTTACGCCACAGCCCGCGAACTGCGTCGCCG CCGCGACATGGTGCCCATCCTGGCGGTGACGGCCTCGGCGATGACGGGCG ACCGCGAGGCGTGCCTGGCGGCGGGCTGCAACAGCTACTTGAGCAAACCC GTCGACCGCTCGGCCATGGTGCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20345:157..930+

>mRNA_P-wetherbeei_contig20345.1.1 ID=mRNA_P-wetherbeei_contig20345.1.1|Name=mRNA_P-wetherbeei_contig20345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig20345:157..930+ (Phaeothamnion wetherbeei SAG_119_79)
GAGACCATCTCCTCGGATCCGACGCGTCTACGTCAGATTCTCATGAATTT
GCTAGGAAACGCCACCAAGTTCACGTCGCAAGGACAGATCCGGCTGATGC
TGACACTCGACGCCGAGAACGAGTTGGTGCAGTTCACCGTAGAAGACAGC
GGCATCGGCATCCCCGAAGGCCGCAAGGAGCATCTCTTCGAGCCCTTCAG
CCAGGCCGATACTTCGGTCACGCGGCGCTTCGGCGGCACAGGTCTCGGGT
TGGCCATCAGCCGCCAGCTGATTCATCTCCTGGGCGGCACCATCGAGGTT
GAGAGCCAGGAGGACGTGGGCACCACGTTCCGCTTTACCATCGCGACGGG
GTCGCTCGAAAAAGTTGCGCTGGTGGAGCCTGCGCACTGGAGCGGAGAGG
ATAAGCAGGCCGCTATTCGTGGTCCTTTGCCGAGTCTGAGCGGCCGCAAA
GTCCTGGTCGTGGACGATCGCCGCGATATCCGCTTTCTGGTCCAGAGCTA
TTTGGAAGAGGCCGGCGCCACGGTAGGCACCGCCGATAACGGTCAAGCGG
CGCTGGACTACTTAGCAGAAACCAGGATGGATATGGTCGTCCTGGACATG
CAGATGCCCGTTTTGGACGGTTACGCCACAGCCCGCGAACTGCGTCGCCG
CCGCGACATGGTGCCCATCCTGGCGGTGACGGCCTCGGCGATGACGGGCG
ACCGCGAGGCGTGCCTGGCGGCGGGCTGCAACAGCTACTTGAGCAAACCC
GTCGACCGCTCGGCCATGGTGCAT
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