mRNA_P-wetherbeei_contig20332.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20332.1.1
Unique NamemRNA_P-wetherbeei_contig20332.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20332.1.1 vs. uniprot
Match: A0A6M5YXH4_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YXH4_9BACT)

HSP 1 Score: 123 bits (308), Expect = 4.890e-34
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 MAHVHGSGRIRTADGRDIDWACDTRDGATGKLVIGEQTFRLEDGGLILVDVRGGKVAIDQLAVELNPFD 207
            M H+HGSGRIR ADGRDIDWA DTRDGA GK+VIGEQT RLEDGGL+LVDVRGGKV IDQLAVEL+ FD
Sbjct:   75 MGHLHGSGRIRCADGRDIDWASDTRDGARGKVVIGEQTLRLEDGGLVLVDVRGGKVVIDQLAVELSQFD 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20332.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M5YXH4_9BACT4.890e-3484.06Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20332contigP-wetherbeei_contig20332:1000..1209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.729898-CDS-P-wetherbeei_contig20332:999..12091683186196.729898-CDS-P-wetherbeei_contig20332:999..1209Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20332 1000..1209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20332.1.1prot_P-wetherbeei_contig20332.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20332 1000..1209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20332.1.1

>prot_P-wetherbeei_contig20332.1.1 ID=prot_P-wetherbeei_contig20332.1.1|Name=mRNA_P-wetherbeei_contig20332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MAHVHGSGRIRTADGRDIDWACDTRDGATGKLVIGEQTFRLEDGGLILVD
VRGGKVAIDQLAVELNPFDP
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mRNA from alignment at P-wetherbeei_contig20332:1000..1209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20332.1.1 ID=mRNA_P-wetherbeei_contig20332.1.1|Name=mRNA_P-wetherbeei_contig20332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig20332:1000..1209+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCACGTACACGGGTCTGGGCGCATCCGCACCGCCGACGGCCGCGA
CATCGACTGGGCCTGCGACACCCGCGACGGCGCGACCGGGAAACTCGTGA
TCGGCGAGCAGACGTTCCGGCTCGAAGACGGCGGCCTCATCCTCGTGGAC
GTGCGCGGCGGAAAGGTCGCGATCGACCAACTGGCGGTCGAGCTGAACCC
GTTCGATCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20332:1000..1209+

>mRNA_P-wetherbeei_contig20332.1.1 ID=mRNA_P-wetherbeei_contig20332.1.1|Name=mRNA_P-wetherbeei_contig20332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig20332:1000..1209+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCACGTACACGGGTCTGGGCGCATCCGCACCGCCGACGGCCGCGA
CATCGACTGGGCCTGCGACACCCGCGACGGCGCGACCGGGAAACTCGTGA
TCGGCGAGCAGACGTTCCGGCTCGAAGACGGCGGCCTCATCCTCGTGGAC
GTGCGCGGCGGAAAGGTCGCGATCGACCAACTGGCGGTCGAGCTGAACCC
GTTCGATCCC
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