mRNA_P-wetherbeei_contig20328.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1H0PW51_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0PW51_9BRAD) HSP 1 Score: 439 bits (1129), Expect = 1.950e-153 Identity = 213/259 (82.24%), Postives = 235/259 (90.73%), Query Frame = 1
Query: 13 MGGIKTALGLAVGMAMLLGGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPS 789
M G+K+ALG+A+G+ +LLG A AQSNYP+R I I+VPYPAGGIVDIVAR V EQVGRD KQ +VVEARPG N NIGT+AVARS+PDGYTWLVTGPAALVNPTLYKDAGWDAMK L CVGLAIWNQSV VVNP+ P +TLAEFV+LAR++PG+LNFGNPGTGSSIDLTAQKLFQ A+IKLTNVGYKGQPPALIDLMT+LM+ EIVSLALALPHIK G I+PLAVFTE RI DLPDVPTIAEAGYPGASYVSWYGIYVP+
Sbjct: 1 MSGLKSALGIAMGLTLLLGQTAQAQSNYPSRAIHIVVPYPAGGIVDIVARAVTEQVGRDWKQTVVVEARPGGNSNIGTAAVARSDPDGYTWLVTGPAALVNPTLYKDAGWDAMKGLTCVGLAIWNQSVAVVNPSLPVKTLAEFVELARSKPGQLNFGNPGTGSSIDLTAQKLFQAADIKLTNVGYKGQPPALIDLMTDLMNLEIVSLALALPHIKDGKIRPLAVFTENRITDLPDVPTIAEAGYPGASYVSWYGIYVPA 259
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: UPI001C00E321 (tripartite tricarboxylate transporter substrate-binding protein n=1 Tax=Bradyrhizobium sp. S2-11-2 TaxID=2840472 RepID=UPI001C00E321) HSP 1 Score: 435 bits (1118), Expect = 9.860e-152 Identity = 218/263 (82.89%), Postives = 233/263 (88.59%), Query Frame = 1
Query: 13 MGGIKTALGLAVGMAMLL---GGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
M GI+ A GLA G A +L G A AQ NYPNRPI I+VPYPAGGIVDIVARTV EQ+GRDLKQAIVVEARPG N NIGT++VARSEPDGYTWLVTGPA LVNPTLYKDAGWDAM+ KCVGLAIWNQSV VVN + P +TL EFV+LAR++PG NFGNPGTGSSIDLTAQKLFQT IKLTNVGYKGQPPALIDL+TNLMHFEIVSLALALPHI+QG+IKPLAVFTEKRIADLPDVPTIAEAGYPGA YVSWYGIYVPSA
Sbjct: 1 MRGIR-AFGLAAGAAGVLLGIGADAQAQGNYPNRPIHIVVPYPAGGIVDIVARTVTEQIGRDLKQAIVVEARPGGNSNIGTASVARSEPDGYTWLVTGPAVLVNPTLYKDAGWDAMQGFKCVGLAIWNQSVAVVNSSLPVKTLGEFVELARSKPGHYNFGNPGTGSSIDLTAQKLFQTTGIKLTNVGYKGQPPALIDLITNLMHFEIVSLALALPHIRQGTIKPLAVFTEKRIADLPDVPTIAEAGYPGAHYVSWYGIYVPSA 262
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A537QNH0_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QNH0_9PROT) HSP 1 Score: 431 bits (1109), Expect = 2.310e-150 Identity = 213/256 (83.20%), Postives = 230/256 (89.84%), Query Frame = 1
Query: 31 ALGLAVGM-AMLLGGAASA--QSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPS 789
AL LA G+ AMLLG +ASA QS YPNRPI +IVPYPAGGIVDIVAR V EQVGRDLKQAIVVE+RPGAN NIGTSAVARSEPDGYTWLVTGPA LVNPTLYKDAGWDAMKD KCV LA+WNQSV VVNP P +T EF++LAR +PG+LNFGNPGTGSSIDLTAQKLFQ A+IKL N+GYKGQPPALIDLMTNLMHFEIVSLALALPHIKQG++KPLAVFTEKR+ADL DVPTIAEAGYP A+Y+ WYGIYVPS
Sbjct: 6 ALCLATGIVAMLLGSSASALAQSQYPNRPIHVIVPYPAGGIVDIVARAVTEQVGRDLKQAIVVESRPGANSNIGTSAVARSEPDGYTWLVTGPAVLVNPTLYKDAGWDAMKDFKCVALAVWNQSVAVVNPTLPVKTFGEFIELARGKPGQLNFGNPGTGSSIDLTAQKLFQVADIKLANIGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGTVKPLAVFTEKRVADLADVPTIAEAGYPEAAYIPWYGIYVPS 261
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1B1UT50_9BRAD (Uncharacterized protein n=15 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1UT50_9BRAD) HSP 1 Score: 422 bits (1086), Expect = 6.120e-147 Identity = 203/254 (79.92%), Postives = 229/254 (90.16%), Query Frame = 1
Query: 22 IKTALGLAVGMAMLLGGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYV 783
+ ALG+A+G+A+ L AA AQ +YPNRPIRIIVPYPAGGIVDIVAR V EQVGRD KQ +V+EARPG N NIGT++VARSEPDGYTWLVTGPAALVNPTLYKDAGWDA+KDLKCVGLA+WNQSV +V+P+ PA T+ EFV++AR +PGELNFGNPGTGSSIDL+AQKLFQ ANIKLTNVGYKGQP ALIDLMTNLMHFEIVSL LALPHI+ GS+KPLAV T+KR+ADLPDVPTIAEAG+P A+YV WYGIYV
Sbjct: 1 MNLALGIALGVAVPLATAAQAQISYPNRPIRIIVPYPAGGIVDIVARAVTEQVGRDWKQTVVIEARPGGNSNIGTASVARSEPDGYTWLVTGPAALVNPTLYKDAGWDALKDLKCVGLAVWNQSVALVHPSMPASTIKEFVEIARKKPGELNFGNPGTGSSIDLSAQKLFQAANIKLTNVGYKGQPQALIDLMTNLMHFEIVSLELALPHIRAGSVKPLAVMTDKRVADLPDVPTIAEAGFPEATYVPWYGIYV 254
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A525JIA9_BRASZ (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JIA9_BRASZ) HSP 1 Score: 424 bits (1089), Expect = 1.190e-146 Identity = 207/267 (77.53%), Postives = 233/267 (87.27%), Query Frame = 1
Query: 1 WEGIMGGIKTALGLAVGMAMLLGGAAS---AQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
WEG M I+T +G+ G+A +L S AQ NYPNRPI I+VPYPAGGIVDIVAR VIEQVGRD KQ IV+EARPGAN NIGT+ VARSEPDGYTWLVTGPA LVNPTLYKDAGWDA+++ KCVGLA+WNQSV VVNP P RTLAEFV LAR++PG+LNFGNPGTGSSIDLTAQKLFQ A+IKL N+GYKGQPPAL+DLMTNLM+FEIVSLALA+PHIK GS++PLAVFTEKR+ADLPDVPTIAEAGY A+Y+ WYGIYVP+A
Sbjct: 41 WEGRMRSIRT-VGIVFGLATVLLATVSGACAQGNYPNRPIHIVVPYPAGGIVDIVARAVIEQVGRDWKQPIVIEARPGANSNIGTAMVARSEPDGYTWLVTGPAVLVNPTLYKDAGWDALQNFKCVGLAVWNQSVAVVNPTMPVRTLAEFVALARSKPGQLNFGNPGTGSSIDLTAQKLFQVADIKLANIGYKGQPPALVDLMTNLMNFEIVSLALAVPHIKDGSVRPLAVFTEKRVADLPDVPTIAEAGYAEAAYLPWYGIYVPAA 306
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A533J2S9_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533J2S9_9BRAD) HSP 1 Score: 421 bits (1083), Expect = 2.090e-146 Identity = 205/255 (80.39%), Postives = 230/255 (90.20%), Query Frame = 1
Query: 25 KTALGLAVGMAMLLGG--AASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYV 783
+ LGLAV ++MLLGG AA+AQ N+PNRPIR+IVPYPAGGIVD+VAR V+EQVGRDLK +VVEARPG N NIGT+AVARS+PDGYT+LVTGPAALVNP LYKDAGWDAMKDLKCVGLA+W QSV VVNP PA+T+ EFV+LAR++PG+ NFGNPGTGSSIDL+AQKLFQ A+IKLTNVGYKGQP AL+DLMTNLMHFEIVS+ALALPHIKQGSIKPLAV T R+ADLPDVPTIAEAGYP A+YV WYGIYV
Sbjct: 5 RALLGLAVSVSMLLGGSAAATAQDNWPNRPIRVIVPYPAGGIVDMVARGVMEQVGRDLKATVVVEARPGGNSNIGTAAVARSDPDGYTFLVTGPAALVNPGLYKDAGWDAMKDLKCVGLAVWTQSVAVVNPTMPAKTIGEFVELARSKPGQFNFGNPGTGSSIDLSAQKLFQAADIKLTNVGYKGQPQALVDLMTNLMHFEIVSMALALPHIKQGSIKPLAVLTHSRVADLPDVPTIAEAGYPEAAYVPWYGIYV 259
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1M5LMU1_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5LMU1_9BRAD) HSP 1 Score: 421 bits (1081), Expect = 4.210e-146 Identity = 206/257 (80.16%), Postives = 226/257 (87.94%), Query Frame = 1
Query: 31 ALGLAVGMAMLL---GGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
A GLA G+A ++ A AQSNYP+RPI IIVPYP GGIVDI+AR V EQVGRD KQ +VVEARPGAN NIGT+AVARS+PDGYTWLVTGPA LVNPTLYKDAGWD M+ KCVGLA+WNQSV VVNPA PA+TLAEFV LAR++PG+LNFGNPGTGSSIDLTAQKLFQ A+I+LTNVGYKGQP AL+DLMTNLMHFEIVSLALALPHIK GSIKPLAVFTE R+ADLPDVPTIAEAGY ASY+ WYG+YVPSA
Sbjct: 6 AFGLAAGVAAIMFSNAPRAQAQSNYPDRPIHIIVPYPPGGIVDIIARAVTEQVGRDWKQPVVVEARPGANSNIGTAAVARSDPDGYTWLVTGPAVLVNPTLYKDAGWDTMQSFKCVGLAVWNQSVAVVNPAMPAKTLAEFVALARSKPGQLNFGNPGTGSSIDLTAQKLFQAAHIQLTNVGYKGQPQALVDLMTNLMHFEIVSLALALPHIKDGSIKPLAVFTENRVADLPDVPTIAEAGYAEASYIPWYGVYVPSA 262
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A0D1NW94_BRAEL (Uncharacterized protein n=20 Tax=Bradyrhizobium TaxID=374 RepID=A0A0D1NW94_BRAEL) HSP 1 Score: 407 bits (1047), Expect = 6.270e-141 Identity = 201/262 (76.72%), Postives = 222/262 (84.73%), Query Frame = 1
Query: 13 MGGIKTALGLAVGMAMLLGGA--ASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
M GI TA+ L + L G+ A AQ NYP+RPI IIVPYPAGGIVDIVAR V EQVGRD KQ +VVEARPG N NIGT+AVARSEPDGYTWLVTGPA LVNP LYKDAGW+A KD KCVGLA+WNQSV +V+P+ P +T+ EFV+LAR RPGE NFGNPGTGSSIDL+AQKLFQ A IKLTNVGYKGQP ALIDLMTNLMHFEIVSL LALPHIK GS+KPLAVFT+KR+ DLPDVPTIAEAG+ A+YV WYGIYVP+A
Sbjct: 1 MRGITTAMALLAAIVTALCGSTGARAQDNYPSRPIHIIVPYPAGGIVDIVARAVTEQVGRDWKQTVVVEARPGGNSNIGTAAVARSEPDGYTWLVTGPALLVNPDLYKDAGWNAAKDFKCVGLAVWNQSVALVHPSMPVKTIGEFVELARKRPGEFNFGNPGTGSSIDLSAQKLFQVAGIKLTNVGYKGQPQALIDLMTNLMHFEIVSLELALPHIKAGSVKPLAVFTDKRVPDLPDVPTIAEAGFAEAAYVPWYGIYVPAA 262
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1H1U604_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1U604_9BRAD) HSP 1 Score: 407 bits (1045), Expect = 1.260e-140 Identity = 196/257 (76.26%), Postives = 224/257 (87.16%), Query Frame = 1
Query: 31 ALGLAVGMAMLLGG---AASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
A LA +A LL G +A AQS+YP+RPI ++VPYPAGGIVDIVAR V EQVGRD KQAIV ++RPGAN NIGT++VARS+PDGYTWLVTGPA LVNPTLYKDAGWD M++ KCVGLA+WNQSV VVNP+ P +TLA+FV+ A RPG+LNFGNPGTGSSIDLTA+KLF ANI L N+GYKGQPPAL+DLMTN M+FE+VSLALALPHIK G+ KPLAVFT+KR+ DLPDVPTIAEAGYPGASYVSWYGIYVP+A
Sbjct: 6 AAALAASVAALLFGTDLSAQAQSSYPDRPIHVVVPYPAGGIVDIVARAVTEQVGRDWKQAIVSDSRPGANSNIGTASVARSDPDGYTWLVTGPAVLVNPTLYKDAGWDPMQNFKCVGLAVWNQSVAVVNPSMPVKTLADFVEYAHKRPGQLNFGNPGTGSSIDLTAKKLFNVANIDLANIGYKGQPPALVDLMTNRMNFEVVSLALALPHIKDGTAKPLAVFTDKRVPDLPDVPTIAEAGYPGASYVSWYGIYVPAA 262
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: UPI001BA62E19 (tripartite tricarboxylate transporter substrate-binding protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA62E19) HSP 1 Score: 402 bits (1033), Expect = 8.740e-139 Identity = 199/263 (75.67%), Postives = 223/263 (84.79%), Query Frame = 1
Query: 13 MGGIKTALGLAVGMAMLLGGA---ASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
M G+ TA+ L V +A L G+ A AQ NYP+RPI IIVP PAGGIVDIVAR V EQVGRD KQ +VVEARPG N NIGT+AVARSEPDGYTWLVTGPA LVNP LYKDAGW AMKD KCVGLA+WNQSV +V+P+ PA+T+ EFV+LARA+PG+ NFGNPGTGSSIDL+AQKLFQ A I LTNVGYKGQP ALIDLMTNLMHFEIVSL LA+PHIK GS+KPLAVFT KR+ADLP+VPTIAEAG+ A+YV WYGIYV +A
Sbjct: 1 MRGMTTAIALLVSLAAALFGSSTGARAQDNYPSRPIHIIVPCPAGGIVDIVARAVTEQVGRDWKQTVVVEARPGGNSNIGTAAVARSEPDGYTWLVTGPAVLVNPGLYKDAGWSAMKDFKCVGLAVWNQSVALVHPSMPAKTIGEFVELARAKPGQFNFGNPGTGSSIDLSAQKLFQVAGITLTNVGYKGQPQALIDLMTNLMHFEIVSLELAVPHIKAGSVKPLAVFTNKRVADLPEVPTIAEAGFAEAAYVPWYGIYVAAA 263 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20328.1.1 >prot_P-wetherbeei_contig20328.1.1 ID=prot_P-wetherbeei_contig20328.1.1|Name=mRNA_P-wetherbeei_contig20328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp MGGIKTALGLAVGMAMLLGGAASAQSNYPNRPIRIIVPYPAGGIVDIVARback to top mRNA from alignment at P-wetherbeei_contig20328:440..1231+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20328.1.1 ID=mRNA_P-wetherbeei_contig20328.1.1|Name=mRNA_P-wetherbeei_contig20328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig20328:440..1231+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20328:440..1231+ >mRNA_P-wetherbeei_contig20328.1.1 ID=mRNA_P-wetherbeei_contig20328.1.1|Name=mRNA_P-wetherbeei_contig20328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig20328:440..1231+ (Phaeothamnion wetherbeei SAG_119_79)back to top |