mRNA_P-wetherbeei_contig20328.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20328.1.1
Unique NamemRNA_P-wetherbeei_contig20328.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1H0PW51_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0PW51_9BRAD)

HSP 1 Score: 439 bits (1129), Expect = 1.950e-153
Identity = 213/259 (82.24%), Postives = 235/259 (90.73%), Query Frame = 1
Query:   13 MGGIKTALGLAVGMAMLLGGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPS 789
            M G+K+ALG+A+G+ +LLG  A AQSNYP+R I I+VPYPAGGIVDIVAR V EQVGRD KQ +VVEARPG N NIGT+AVARS+PDGYTWLVTGPAALVNPTLYKDAGWDAMK L CVGLAIWNQSV VVNP+ P +TLAEFV+LAR++PG+LNFGNPGTGSSIDLTAQKLFQ A+IKLTNVGYKGQPPALIDLMT+LM+ EIVSLALALPHIK G I+PLAVFTE RI DLPDVPTIAEAGYPGASYVSWYGIYVP+
Sbjct:    1 MSGLKSALGIAMGLTLLLGQTAQAQSNYPSRAIHIVVPYPAGGIVDIVARAVTEQVGRDWKQTVVVEARPGGNSNIGTAAVARSDPDGYTWLVTGPAALVNPTLYKDAGWDAMKGLTCVGLAIWNQSVAVVNPSLPVKTLAEFVELARSKPGQLNFGNPGTGSSIDLTAQKLFQAADIKLTNVGYKGQPPALIDLMTDLMNLEIVSLALALPHIKDGKIRPLAVFTENRITDLPDVPTIAEAGYPGASYVSWYGIYVPA 259          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: UPI001C00E321 (tripartite tricarboxylate transporter substrate-binding protein n=1 Tax=Bradyrhizobium sp. S2-11-2 TaxID=2840472 RepID=UPI001C00E321)

HSP 1 Score: 435 bits (1118), Expect = 9.860e-152
Identity = 218/263 (82.89%), Postives = 233/263 (88.59%), Query Frame = 1
Query:   13 MGGIKTALGLAVGMAMLL---GGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
            M GI+ A GLA G A +L   G  A AQ NYPNRPI I+VPYPAGGIVDIVARTV EQ+GRDLKQAIVVEARPG N NIGT++VARSEPDGYTWLVTGPA LVNPTLYKDAGWDAM+  KCVGLAIWNQSV VVN + P +TL EFV+LAR++PG  NFGNPGTGSSIDLTAQKLFQT  IKLTNVGYKGQPPALIDL+TNLMHFEIVSLALALPHI+QG+IKPLAVFTEKRIADLPDVPTIAEAGYPGA YVSWYGIYVPSA
Sbjct:    1 MRGIR-AFGLAAGAAGVLLGIGADAQAQGNYPNRPIHIVVPYPAGGIVDIVARTVTEQIGRDLKQAIVVEARPGGNSNIGTASVARSEPDGYTWLVTGPAVLVNPTLYKDAGWDAMQGFKCVGLAIWNQSVAVVNSSLPVKTLGEFVELARSKPGHYNFGNPGTGSSIDLTAQKLFQTTGIKLTNVGYKGQPPALIDLITNLMHFEIVSLALALPHIRQGTIKPLAVFTEKRIADLPDVPTIAEAGYPGAHYVSWYGIYVPSA 262          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A537QNH0_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QNH0_9PROT)

HSP 1 Score: 431 bits (1109), Expect = 2.310e-150
Identity = 213/256 (83.20%), Postives = 230/256 (89.84%), Query Frame = 1
Query:   31 ALGLAVGM-AMLLGGAASA--QSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPS 789
            AL LA G+ AMLLG +ASA  QS YPNRPI +IVPYPAGGIVDIVAR V EQVGRDLKQAIVVE+RPGAN NIGTSAVARSEPDGYTWLVTGPA LVNPTLYKDAGWDAMKD KCV LA+WNQSV VVNP  P +T  EF++LAR +PG+LNFGNPGTGSSIDLTAQKLFQ A+IKL N+GYKGQPPALIDLMTNLMHFEIVSLALALPHIKQG++KPLAVFTEKR+ADL DVPTIAEAGYP A+Y+ WYGIYVPS
Sbjct:    6 ALCLATGIVAMLLGSSASALAQSQYPNRPIHVIVPYPAGGIVDIVARAVTEQVGRDLKQAIVVESRPGANSNIGTSAVARSEPDGYTWLVTGPAVLVNPTLYKDAGWDAMKDFKCVALAVWNQSVAVVNPTLPVKTFGEFIELARGKPGQLNFGNPGTGSSIDLTAQKLFQVADIKLANIGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGTVKPLAVFTEKRVADLADVPTIAEAGYPEAAYIPWYGIYVPS 261          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1B1UT50_9BRAD (Uncharacterized protein n=15 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1UT50_9BRAD)

HSP 1 Score: 422 bits (1086), Expect = 6.120e-147
Identity = 203/254 (79.92%), Postives = 229/254 (90.16%), Query Frame = 1
Query:   22 IKTALGLAVGMAMLLGGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYV 783
            +  ALG+A+G+A+ L  AA AQ +YPNRPIRIIVPYPAGGIVDIVAR V EQVGRD KQ +V+EARPG N NIGT++VARSEPDGYTWLVTGPAALVNPTLYKDAGWDA+KDLKCVGLA+WNQSV +V+P+ PA T+ EFV++AR +PGELNFGNPGTGSSIDL+AQKLFQ ANIKLTNVGYKGQP ALIDLMTNLMHFEIVSL LALPHI+ GS+KPLAV T+KR+ADLPDVPTIAEAG+P A+YV WYGIYV
Sbjct:    1 MNLALGIALGVAVPLATAAQAQISYPNRPIRIIVPYPAGGIVDIVARAVTEQVGRDWKQTVVIEARPGGNSNIGTASVARSEPDGYTWLVTGPAALVNPTLYKDAGWDALKDLKCVGLAVWNQSVALVHPSMPASTIKEFVEIARKKPGELNFGNPGTGSSIDLSAQKLFQAANIKLTNVGYKGQPQALIDLMTNLMHFEIVSLELALPHIRAGSVKPLAVMTDKRVADLPDVPTIAEAGFPEATYVPWYGIYV 254          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A525JIA9_BRASZ (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JIA9_BRASZ)

HSP 1 Score: 424 bits (1089), Expect = 1.190e-146
Identity = 207/267 (77.53%), Postives = 233/267 (87.27%), Query Frame = 1
Query:    1 WEGIMGGIKTALGLAVGMAMLLGGAAS---AQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
            WEG M  I+T +G+  G+A +L    S   AQ NYPNRPI I+VPYPAGGIVDIVAR VIEQVGRD KQ IV+EARPGAN NIGT+ VARSEPDGYTWLVTGPA LVNPTLYKDAGWDA+++ KCVGLA+WNQSV VVNP  P RTLAEFV LAR++PG+LNFGNPGTGSSIDLTAQKLFQ A+IKL N+GYKGQPPAL+DLMTNLM+FEIVSLALA+PHIK GS++PLAVFTEKR+ADLPDVPTIAEAGY  A+Y+ WYGIYVP+A
Sbjct:   41 WEGRMRSIRT-VGIVFGLATVLLATVSGACAQGNYPNRPIHIVVPYPAGGIVDIVARAVIEQVGRDWKQPIVIEARPGANSNIGTAMVARSEPDGYTWLVTGPAVLVNPTLYKDAGWDALQNFKCVGLAVWNQSVAVVNPTMPVRTLAEFVALARSKPGQLNFGNPGTGSSIDLTAQKLFQVADIKLANIGYKGQPPALVDLMTNLMNFEIVSLALAVPHIKDGSVRPLAVFTEKRVADLPDVPTIAEAGYAEAAYLPWYGIYVPAA 306          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A533J2S9_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533J2S9_9BRAD)

HSP 1 Score: 421 bits (1083), Expect = 2.090e-146
Identity = 205/255 (80.39%), Postives = 230/255 (90.20%), Query Frame = 1
Query:   25 KTALGLAVGMAMLLGG--AASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYV 783
            +  LGLAV ++MLLGG  AA+AQ N+PNRPIR+IVPYPAGGIVD+VAR V+EQVGRDLK  +VVEARPG N NIGT+AVARS+PDGYT+LVTGPAALVNP LYKDAGWDAMKDLKCVGLA+W QSV VVNP  PA+T+ EFV+LAR++PG+ NFGNPGTGSSIDL+AQKLFQ A+IKLTNVGYKGQP AL+DLMTNLMHFEIVS+ALALPHIKQGSIKPLAV T  R+ADLPDVPTIAEAGYP A+YV WYGIYV
Sbjct:    5 RALLGLAVSVSMLLGGSAAATAQDNWPNRPIRVIVPYPAGGIVDMVARGVMEQVGRDLKATVVVEARPGGNSNIGTAAVARSDPDGYTFLVTGPAALVNPGLYKDAGWDAMKDLKCVGLAVWTQSVAVVNPTMPAKTIGEFVELARSKPGQFNFGNPGTGSSIDLSAQKLFQAADIKLTNVGYKGQPQALVDLMTNLMHFEIVSMALALPHIKQGSIKPLAVLTHSRVADLPDVPTIAEAGYPEAAYVPWYGIYV 259          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1M5LMU1_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5LMU1_9BRAD)

HSP 1 Score: 421 bits (1081), Expect = 4.210e-146
Identity = 206/257 (80.16%), Postives = 226/257 (87.94%), Query Frame = 1
Query:   31 ALGLAVGMAMLL---GGAASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
            A GLA G+A ++      A AQSNYP+RPI IIVPYP GGIVDI+AR V EQVGRD KQ +VVEARPGAN NIGT+AVARS+PDGYTWLVTGPA LVNPTLYKDAGWD M+  KCVGLA+WNQSV VVNPA PA+TLAEFV LAR++PG+LNFGNPGTGSSIDLTAQKLFQ A+I+LTNVGYKGQP AL+DLMTNLMHFEIVSLALALPHIK GSIKPLAVFTE R+ADLPDVPTIAEAGY  ASY+ WYG+YVPSA
Sbjct:    6 AFGLAAGVAAIMFSNAPRAQAQSNYPDRPIHIIVPYPPGGIVDIIARAVTEQVGRDWKQPVVVEARPGANSNIGTAAVARSDPDGYTWLVTGPAVLVNPTLYKDAGWDTMQSFKCVGLAVWNQSVAVVNPAMPAKTLAEFVALARSKPGQLNFGNPGTGSSIDLTAQKLFQAAHIQLTNVGYKGQPQALVDLMTNLMHFEIVSLALALPHIKDGSIKPLAVFTENRVADLPDVPTIAEAGYAEASYIPWYGVYVPSA 262          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A0D1NW94_BRAEL (Uncharacterized protein n=20 Tax=Bradyrhizobium TaxID=374 RepID=A0A0D1NW94_BRAEL)

HSP 1 Score: 407 bits (1047), Expect = 6.270e-141
Identity = 201/262 (76.72%), Postives = 222/262 (84.73%), Query Frame = 1
Query:   13 MGGIKTALGLAVGMAMLLGGA--ASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
            M GI TA+ L   +   L G+  A AQ NYP+RPI IIVPYPAGGIVDIVAR V EQVGRD KQ +VVEARPG N NIGT+AVARSEPDGYTWLVTGPA LVNP LYKDAGW+A KD KCVGLA+WNQSV +V+P+ P +T+ EFV+LAR RPGE NFGNPGTGSSIDL+AQKLFQ A IKLTNVGYKGQP ALIDLMTNLMHFEIVSL LALPHIK GS+KPLAVFT+KR+ DLPDVPTIAEAG+  A+YV WYGIYVP+A
Sbjct:    1 MRGITTAMALLAAIVTALCGSTGARAQDNYPSRPIHIIVPYPAGGIVDIVARAVTEQVGRDWKQTVVVEARPGGNSNIGTAAVARSEPDGYTWLVTGPALLVNPDLYKDAGWNAAKDFKCVGLAVWNQSVALVHPSMPVKTIGEFVELARKRPGEFNFGNPGTGSSIDLSAQKLFQVAGIKLTNVGYKGQPQALIDLMTNLMHFEIVSLELALPHIKAGSVKPLAVFTDKRVPDLPDVPTIAEAGFAEAAYVPWYGIYVPAA 262          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: A0A1H1U604_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1U604_9BRAD)

HSP 1 Score: 407 bits (1045), Expect = 1.260e-140
Identity = 196/257 (76.26%), Postives = 224/257 (87.16%), Query Frame = 1
Query:   31 ALGLAVGMAMLLGG---AASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
            A  LA  +A LL G   +A AQS+YP+RPI ++VPYPAGGIVDIVAR V EQVGRD KQAIV ++RPGAN NIGT++VARS+PDGYTWLVTGPA LVNPTLYKDAGWD M++ KCVGLA+WNQSV VVNP+ P +TLA+FV+ A  RPG+LNFGNPGTGSSIDLTA+KLF  ANI L N+GYKGQPPAL+DLMTN M+FE+VSLALALPHIK G+ KPLAVFT+KR+ DLPDVPTIAEAGYPGASYVSWYGIYVP+A
Sbjct:    6 AAALAASVAALLFGTDLSAQAQSSYPDRPIHVVVPYPAGGIVDIVARAVTEQVGRDWKQAIVSDSRPGANSNIGTASVARSDPDGYTWLVTGPAVLVNPTLYKDAGWDPMQNFKCVGLAVWNQSVAVVNPSMPVKTLADFVEYAHKRPGQLNFGNPGTGSSIDLTAKKLFNVANIDLANIGYKGQPPALVDLMTNRMNFEVVSLALALPHIKDGTAKPLAVFTDKRVPDLPDVPTIAEAGYPGASYVSWYGIYVPAA 262          
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Match: UPI001BA62E19 (tripartite tricarboxylate transporter substrate-binding protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA62E19)

HSP 1 Score: 402 bits (1033), Expect = 8.740e-139
Identity = 199/263 (75.67%), Postives = 223/263 (84.79%), Query Frame = 1
Query:   13 MGGIKTALGLAVGMAMLLGGA---ASAQSNYPNRPIRIIVPYPAGGIVDIVARTVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALVNPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARARPGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLMHFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYVSWYGIYVPSA 792
            M G+ TA+ L V +A  L G+   A AQ NYP+RPI IIVP PAGGIVDIVAR V EQVGRD KQ +VVEARPG N NIGT+AVARSEPDGYTWLVTGPA LVNP LYKDAGW AMKD KCVGLA+WNQSV +V+P+ PA+T+ EFV+LARA+PG+ NFGNPGTGSSIDL+AQKLFQ A I LTNVGYKGQP ALIDLMTNLMHFEIVSL LA+PHIK GS+KPLAVFT KR+ADLP+VPTIAEAG+  A+YV WYGIYV +A
Sbjct:    1 MRGMTTAIALLVSLAAALFGSSTGARAQDNYPSRPIHIIVPCPAGGIVDIVARAVTEQVGRDWKQTVVVEARPGGNSNIGTAAVARSEPDGYTWLVTGPAVLVNPGLYKDAGWSAMKDFKCVGLAVWNQSVALVHPSMPAKTIGEFVELARAKPGQFNFGNPGTGSSIDLSAQKLFQVAGITLTNVGYKGQPQALIDLMTNLMHFEIVSLELAVPHIKAGSVKPLAVFTNKRVADLPEVPTIAEAGFAEAAYVPWYGIYVAAA 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H0PW51_9BRAD1.950e-15382.24Tripartite-type tricarboxylate transporter, recept... [more]
UPI001C00E3219.860e-15282.89tripartite tricarboxylate transporter substrate-bi... [more]
A0A537QNH0_9PROT2.310e-15083.20Tripartite tricarboxylate transporter substrate bi... [more]
A0A1B1UT50_9BRAD6.120e-14779.92Uncharacterized protein n=15 Tax=Bradyrhizobium Ta... [more]
A0A525JIA9_BRASZ1.190e-14677.53Tripartite tricarboxylate transporter substrate bi... [more]
A0A533J2S9_9BRAD2.090e-14680.39Tripartite tricarboxylate transporter substrate bi... [more]
A0A1M5LMU1_9BRAD4.210e-14680.16Tripartite-type tricarboxylate transporter, recept... [more]
A0A0D1NW94_BRAEL6.270e-14176.72Uncharacterized protein n=20 Tax=Bradyrhizobium Ta... [more]
A0A1H1U604_9BRAD1.260e-14076.26Tripartite-type tricarboxylate transporter, recept... [more]
UPI001BA62E198.740e-13975.67tripartite tricarboxylate transporter substrate-bi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20328contigP-wetherbeei_contig20328:440..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1298867.AUES01000001_gene1855
PFAMsTctC
Model size792
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.11e-151
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1R9KJ@1224|Proteobacteria,2U22P@28211|Alphaproteobacteria,3JVC2@41294|Bradyrhizobiaceae
DescriptionTripartite tricarboxylate transporter family receptor
Cds size780
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.6427824-UTR-P-wetherbeei_contig20328:439..4511683186196.6427824-UTR-P-wetherbeei_contig20328:439..451Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20328 440..451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.651651-CDS-P-wetherbeei_contig20328:451..12311683186196.651651-CDS-P-wetherbeei_contig20328:451..1231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20328 452..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20328.1.1prot_P-wetherbeei_contig20328.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20328 452..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20328.1.1

>prot_P-wetherbeei_contig20328.1.1 ID=prot_P-wetherbeei_contig20328.1.1|Name=mRNA_P-wetherbeei_contig20328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MGGIKTALGLAVGMAMLLGGAASAQSNYPNRPIRIIVPYPAGGIVDIVAR
TVIEQVGRDLKQAIVVEARPGANGNIGTSAVARSEPDGYTWLVTGPAALV
NPTLYKDAGWDAMKDLKCVGLAIWNQSVGVVNPASPARTLAEFVDLARAR
PGELNFGNPGTGSSIDLTAQKLFQTANIKLTNVGYKGQPPALIDLMTNLM
HFEIVSLALALPHIKQGSIKPLAVFTEKRIADLPDVPTIAEAGYPGASYV
SWYGIYVPSA
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mRNA from alignment at P-wetherbeei_contig20328:440..1231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20328.1.1 ID=mRNA_P-wetherbeei_contig20328.1.1|Name=mRNA_P-wetherbeei_contig20328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig20328:440..1231+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGAGGGAATAATGGGCGGGATCAAAACCGCGCTGGGGCTTGCCGTCGG CATGGCCATGCTGCTCGGCGGTGCAGCCAGCGCGCAGAGCAATTATCCGA ACCGGCCAATCCGCATCATCGTGCCCTACCCCGCCGGCGGCATCGTCGAT ATCGTCGCCCGCACCGTGATCGAACAGGTCGGCCGCGACCTGAAGCAGGC GATCGTCGTCGAGGCGCGGCCCGGCGCCAACGGCAATATCGGCACATCGG CGGTCGCGCGCAGCGAACCCGATGGATACACCTGGCTGGTCACGGGACCT GCGGCGCTGGTCAACCCGACGCTCTACAAGGACGCCGGCTGGGACGCGAT GAAGGATCTCAAATGCGTCGGCCTCGCGATCTGGAATCAGAGCGTGGGCG TCGTCAATCCTGCGAGTCCGGCCAGGACGCTCGCCGAATTCGTCGATCTC GCGCGAGCCAGGCCCGGCGAACTCAATTTTGGCAATCCCGGCACCGGATC GTCGATCGACCTGACCGCGCAAAAACTGTTTCAGACCGCCAACATCAAAC TGACCAATGTCGGCTACAAGGGCCAGCCGCCGGCGCTGATCGATCTGATG ACCAATCTGATGCATTTCGAGATCGTCTCGCTGGCGCTGGCGCTGCCGCA CATCAAGCAAGGCTCGATCAAGCCGCTGGCGGTATTCACGGAAAAGCGGA TTGCCGATCTGCCTGACGTGCCGACGATCGCGGAGGCCGGATATCCCGGC GCGTCCTATGTCTCCTGGTACGGCATCTACGTGCCGTCAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20328:440..1231+

>mRNA_P-wetherbeei_contig20328.1.1 ID=mRNA_P-wetherbeei_contig20328.1.1|Name=mRNA_P-wetherbeei_contig20328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig20328:440..1231+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGGGATCAAAACCGCGCTGGGGCTTGCCGTCGGCATGGCCATGCT
GCTCGGCGGTGCAGCCAGCGCGCAGAGCAATTATCCGAACCGGCCAATCC
GCATCATCGTGCCCTACCCCGCCGGCGGCATCGTCGATATCGTCGCCCGC
ACCGTGATCGAACAGGTCGGCCGCGACCTGAAGCAGGCGATCGTCGTCGA
GGCGCGGCCCGGCGCCAACGGCAATATCGGCACATCGGCGGTCGCGCGCA
GCGAACCCGATGGATACACCTGGCTGGTCACGGGACCTGCGGCGCTGGTC
AACCCGACGCTCTACAAGGACGCCGGCTGGGACGCGATGAAGGATCTCAA
ATGCGTCGGCCTCGCGATCTGGAATCAGAGCGTGGGCGTCGTCAATCCTG
CGAGTCCGGCCAGGACGCTCGCCGAATTCGTCGATCTCGCGCGAGCCAGG
CCCGGCGAACTCAATTTTGGCAATCCCGGCACCGGATCGTCGATCGACCT
GACCGCGCAAAAACTGTTTCAGACCGCCAACATCAAACTGACCAATGTCG
GCTACAAGGGCCAGCCGCCGGCGCTGATCGATCTGATGACCAATCTGATG
CATTTCGAGATCGTCTCGCTGGCGCTGGCGCTGCCGCACATCAAGCAAGG
CTCGATCAAGCCGCTGGCGGTATTCACGGAAAAGCGGATTGCCGATCTGC
CTGACGTGCCGACGATCGCGGAGGCCGGATATCCCGGCGCGTCCTATGTC
TCCTGGTACGGCATCTACGTGCCGTCAGCG
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