mRNA_P-wetherbeei_contig20324.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20324.1.1
Unique NamemRNA_P-wetherbeei_contig20324.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: A0A4D9D6U1_9STRA (IPPc domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6U1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-10
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   49 KKVAKGLRPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKVRE 219
            +K   G R PS+TDRIL HSLAD +  L    YELCDA+ GSDHRPV  AF L++ +
Sbjct: 1098 QKKGDGQRVPSYTDRILFHSLADVRGSLSLVAYELCDALTGSDHRPVSAAFELRLNK 1154          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: I2CNZ6_NANGC (Endonuclease exonuclease phosphatase family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CNZ6_NANGC)

HSP 1 Score: 65.1 bits (157), Expect = 1.340e-10
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   52 KVAKGLRPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKVRE 219
            K   G R PS+TDRIL HSLAD +  L    YELCDA+ GSDHRPV  AF L++ +
Sbjct:   46 KKGDGQRVPSYTDRILFHSLADVRGSLSLVAYELCDALTGSDHRPVSAAFELRLNK 101          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: A0A4D9D3U3_9STRA (IPPc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3U3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.580e-10
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   70 RPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKV 213
            RPPSWTDR+L HSL   +  L    Y++CDA++GSDHRP+  AF L +
Sbjct:  900 RPPSWTDRVLYHSLPGMEGMLELEAYDMCDAIVGSDHRPIVAAFRLSL 947          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: A0A4D9DI31_9STRA (IPPc domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DI31_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.090e-8
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   70 RPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKV 213
            R PS+TDRIL H + D + R+  GPYE+CDA+ GSDHRPV    T +V
Sbjct:  953 RIPSYTDRILLHVVEDFKDRIRLGPYEMCDALQGSDHRPVSTLVTARV 1000          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: A0A7S3MBG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBG7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.710e-8
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   58 AKGLRPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKV 213
            AK LRPPS+TDRIL HSL D+Q R+    Y+ CD +  SDHR V     L+V
Sbjct:  266 AKKLRPPSYTDRILIHSLPDRQDRVTVQAYDFCDRLRVSDHRAVSMTVRLEV 317          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: A0A7S2BYH3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYH3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.020e-8
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   55 VAKGLRPPSWTDRILTHSLADKQSRL--VAGPYELCDAVLGSDHRPVCGAFTLKV 213
            V  G RPPS+TDR+L HSL D++  L    G Y+LCD VL SDHRPV     L V
Sbjct:   66 VKAGARPPSYTDRVLVHSLPDQKLFLDITGGTYDLCDDVLASDHRPVALTCALGV 120          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: A0A4D9D5Q1_9STRA (IPPc domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5Q1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.220e-8
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   49 KKVAKGLRPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKV 213
            K+    LR PS+TDRILTHS+  K + L    Y++ DAV  SDHRPVC  FTL V
Sbjct: 1014 KRKGVSLRTPSYTDRILTHSMPGKGANLRWRHYDMMDAVPLSDHRPVCAHFTLFV 1068          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: K8Z6I3_NANGC (Inositol polyphosphate 5-phosphatase ocrl-1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z6I3_NANGC)

HSP 1 Score: 57.4 bits (137), Expect = 7.020e-8
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   70 RPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKV 213
            RPPS+TDRIL H+L D   R+    Y++CDA+ GSDHRPV     LK+
Sbjct:  458 RPPSYTDRILFHALPDVGPRVFIQGYDMCDAITGSDHRPVVCRVDLKL 505          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: W7U3Z1_9STRA (Type ii inositol--trisphosphate 5-phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3Z1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.170e-8
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   70 RPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKV 213
            RPPS+TDRIL H+L D   R+    Y++CDA+ GSDHRPV     LK+
Sbjct:  968 RPPSYTDRILFHALPDVGPRVFIQGYDMCDAITGSDHRPVVCRVDLKL 1015          
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Match: A0A1V9ZAQ0_9STRA (G_PROTEIN_RECEP_F1_2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAQ0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-7
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   64 GLRPPSWTDRILTHSLADKQSRLVAGPYELCDAVLGSDHRPVCGAFTLKVRE 219
            GLR PS+TDRIL HSL D Q R+    Y  C+ V  SDH+PV G F + V +
Sbjct:  699 GLRVPSYTDRILYHSLPDLQDRIKCTKYTSCEDVGTSDHKPVAGVFLVAVEK 750          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20324.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A4D9D6U1_9STRA1.010e-1056.14IPPc domain-containing protein n=2 Tax=Nannochloro... [more]
I2CNZ6_NANGC1.340e-1057.14Endonuclease exonuclease phosphatase family protei... [more]
A0A4D9D3U3_9STRA2.580e-1054.17IPPc domain-containing protein n=1 Tax=Nannochloro... [more]
A0A4D9DI31_9STRA1.090e-856.25IPPc domain-containing protein n=4 Tax=Monodopsida... [more]
A0A7S3MBG7_9STRA3.710e-853.85Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2BYH3_9STRA5.020e-854.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D5Q1_9STRA5.220e-854.55IPPc domain-containing protein n=5 Tax=Monodopsida... [more]
K8Z6I3_NANGC7.020e-854.17Inositol polyphosphate 5-phosphatase ocrl-1 n=1 Ta... [more]
W7U3Z1_9STRA7.170e-854.17Type ii inositol--trisphosphate 5-phosphatase n=1 ... [more]
A0A1V9ZAQ0_9STRA1.820e-751.92G_PROTEIN_RECEP_F1_2 domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20324contigP-wetherbeei_contig20324:315..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra80053
PFAMsDicty_CAR
Model size219
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.66e-07
EggNOG OGs28P3R@1|root,2QVQA@2759|Eukaryota,3QAGD@4776|Peronosporales
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.6188812-CDS-P-wetherbeei_contig20324:314..5331683186196.6188812-CDS-P-wetherbeei_contig20324:314..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20324 315..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20324.1.1prot_P-wetherbeei_contig20324.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20324 315..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20324.1.1

>prot_P-wetherbeei_contig20324.1.1 ID=prot_P-wetherbeei_contig20324.1.1|Name=mRNA_P-wetherbeei_contig20324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
GAVGGGVSSKAAAAADKKVAKGLRPPSWTDRILTHSLADKQSRLVAGPYE
LCDAVLGSDHRPVCGAFTLKVRE
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mRNA from alignment at P-wetherbeei_contig20324:315..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20324.1.1 ID=mRNA_P-wetherbeei_contig20324.1.1|Name=mRNA_P-wetherbeei_contig20324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig20324:315..533- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCTGTTGGCGGCGGCGTGTCCTCCAAGGCGGCGGCGGCGGCCGACAA GAAGGTGGCGAAGGGGCTGCGGCCGCCTTCCTGGACGGACCGCATCCTGA CGCACTCGCTGGCGGACAAGCAGTCGCGGCTGGTGGCCGGGCCGTACGAG CTGTGCGACGCCGTGCTTGGGAGCGACCACCGCCCTGTCTGCGGCGCCTT TACGCTCAAGGTGAGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20324:315..533-

>mRNA_P-wetherbeei_contig20324.1.1 ID=mRNA_P-wetherbeei_contig20324.1.1|Name=mRNA_P-wetherbeei_contig20324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig20324:315..533- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCTGTTGGCGGCGGCGTGTCCTCCAAGGCGGCGGCGGCGGCCGACAA
GAAGGTGGCGAAGGGGCTGCGGCCGCCTTCCTGGACGGACCGCATCCTGA
CGCACTCGCTGGCGGACAAGCAGTCGCGGCTGGTGGCCGGGCCGTACGAG
CTGTGCGACGCCGTGCTTGGGAGCGACCACCGCCCTGTCTGCGGCGCCTT
TACGCTCAAGGTGAGGGAG
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