mRNA_P-wetherbeei_contig2032.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2032.4.1
Unique NamemRNA_P-wetherbeei_contig2032.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2032.4.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-9
Identity = 44/91 (48.35%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:    2 EEGARSHLSLLLFWGHMAVHGLFDFLLEQTSLSTGT---------------GRAADVPLLLSRRTFLNGTLRRLQPRFHGHITRSRDACAA 229
            E+ +R  LSLL F GHMAVHGLFDFLLE    STG                G   DVPLLLSR  FLN +L+ L+ R  G + RSR   +A
Sbjct:  854 EDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHSTGVVGGGGLAASGRGGRMGSGGDVPLLLSREPFLNASLKALKVRQKGPMHRSRATVSA 944
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BLAST of mRNA_P-wetherbeei_contig2032.4.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.720e-9
Identity = 43/91 (47.25%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:    2 EEGARSHLSLLLFWGHMAVHGLFDFLLEQTSLSTGT---------------GRAADVPLLLSRRTFLNGTLRRLQPRFHGHITRSRDACAA 229
            E+ +R  LSLL F GHMAVHGLFDFLLE    STG                G   DVPLLLSR  FLN +L+ L+ +  G + RSR   +A
Sbjct:  549 EDRSRPQLSLLTFRGHMAVHGLFDFLLEACGHSTGVVGGGGLAASGRGGRMGLGGDVPLLLSREPFLNASLKALKVQQKGPMHRSRATVSA 639
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2032.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K212_9PHAE1.700e-948.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXK2_ECTSI5.720e-947.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2032contigP-wetherbeei_contig2032:4327..5860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1152
Hectar predicted targeting categoryother localisation
Exons2
Cds size873
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.476777-UTR-P-wetherbeei_contig2032:4326..43751683186196.476777-UTR-P-wetherbeei_contig2032:4326..4375Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2032 4327..4375 +
1683186196.5163183-UTR-P-wetherbeei_contig2032:5630..58601683186196.5163183-UTR-P-wetherbeei_contig2032:5630..5860Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2032 5631..5860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.4921436-CDS-P-wetherbeei_contig2032:4375..44141683186196.4921436-CDS-P-wetherbeei_contig2032:4375..4414Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2032 4376..4414 +
1683186196.5063634-CDS-P-wetherbeei_contig2032:4796..56301683186196.5063634-CDS-P-wetherbeei_contig2032:4796..5630Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2032 4797..5630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2032.4.1prot_P-wetherbeei_contig2032.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2032 4376..5630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2032.4.1

>prot_P-wetherbeei_contig2032.4.1 ID=prot_P-wetherbeei_contig2032.4.1|Name=mRNA_P-wetherbeei_contig2032.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=291bp
MAVHGLFDFLLEQTSLSTGTGRAADVPLLLSRRTFLNGTLRRLQPRFHGH
ITRSRDACAAAPAAAAARAAGAAVTASTGAAAAAGALAAAASRARSGRTG
TGGDESGSAAAAGEMQALELVGPVMPSAVRDMTAALGRLQAAGQRRAAAA
TANGSASAGFGAGSAEEDDAYDDGYSEDSYDAEAMATEGCRPPAPAAAAA
AAAVAAEADGGLFRAAVRVDEDTVFFNAACTTPAATAAAPFGGGAARGAA
VAAAAAGLPQRGGYVVELVARAAEDDRIVYDCCIEDPPWQ*
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mRNA from alignment at P-wetherbeei_contig2032:4327..5860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2032.4.1 ID=mRNA_P-wetherbeei_contig2032.4.1|Name=mRNA_P-wetherbeei_contig2032.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1534bp|location=Sequence derived from alignment at P-wetherbeei_contig2032:4327..5860+ (Phaeothamnion wetherbeei SAG_119_79)
CGAGGAAGGGGCGCGGTCGCACCTGTCGCTGCTGCTGTTCTGGGGCCACA
TGGCGGTACACGGTCTCTTCGACTTTCTGCTCGAGCAGGTGAGAGTGGTT
TAACAGATTCCGCGAGTCGGAAATGCACTTGCTGGCAGATCGATGTTTGA
AGTTCTCCTCTTATACCCTTTCTGCCTTCATTCAGCAAACCGTTTGGTTT
CGGCTTTCCGCTATGTCCACCCCGTGCTGAAAGTGTCTGCTAGTAGTGTA
GGTGATCATTAATAATCCCTATTGAGATGCGCTGGCGGCAGATCGATTGT
ATTGGGTATTAAGTAGAGGTGTTGTCTCTCGTTGTCCATTGGTAATGTTG
TCTGCCGTTGGTTAGCATTCGTCTATTTAAGCAAATGTAGTCACCCTATC
TCCTTGCTGCCTTCCGATGGCTTTGCCACCGGCGTTACCGCCCCGCTGCT
GCCGCCGCGTCCGCATACAGACGAGCTTGTCGACAGGCACGGGCCGCGCA
GCGGACGTTCCGCTGCTGCTGAGCCGCCGCACCTTCCTCAACGGCACACT
GAGACGCCTGCAGCCGCGCTTCCATGGCCACATCACCCGCTCCCGGGACG
CGTGCGCCGCCGCGCCGGCCGCCGCCGCAGCCAGAGCCGCCGGAGCCGCC
GTCACAGCATCAACGGGTGCCGCAGCCGCCGCGGGCGCATTGGCTGCAGC
CGCTTCCCGTGCCAGAAGCGGCAGAACCGGCACCGGCGGCGACGAAAGCG
GCAGCGCTGCCGCGGCAGGCGAAATGCAGGCGCTGGAGCTGGTGGGGCCG
GTCATGCCATCCGCCGTGCGGGACATGACGGCGGCCCTCGGCCGGCTGCA
GGCGGCCGGGCAACGCCGGGCCGCCGCCGCCACCGCCAATGGTTCTGCGT
CGGCCGGCTTTGGGGCGGGATCGGCTGAGGAGGACGACGCGTACGACGAT
GGCTACAGCGAGGACAGCTACGACGCGGAGGCGATGGCGACGGAGGGCTG
TAGGCCGCCGGCACCGGCGGCGGCGGCGGCGGCAGCAGCAGTGGCGGCCG
AAGCGGATGGCGGGCTGTTCCGGGCAGCGGTGCGAGTGGACGAAGATACT
GTCTTCTTTAACGCTGCATGCACCACCCCTGCCGCCACTGCGGCAGCGCC
GTTCGGAGGCGGGGCAGCCAGAGGTGCTGCGGTGGCTGCAGCAGCGGCGG
GGCTGCCGCAGCGCGGAGGCTACGTCGTGGAGCTGGTGGCACGGGCGGCG
GAGGACGATCGAATCGTGTACGATTGCTGCATTGAAGATCCGCCGTGGCA
GTGAGAGAAGAAGAGTCAATGGCGAGGCTTGTGACCACTAGAAACGACGC
AAGAAAGCGGGGCCGATGCCCCGCGGGGAGGGTGTTAACGGAGTGAAGCA
GAGCTTCGGCATAGCGTGTAGTCTACTTTGTATACTTTTCATATCTGTAG
TATACGACCAACCCAGGGCATTTTTGAAGGTTGCTCCAGGACGCACGAGC
CCGACCAAATAGATGTAAGGAATGTCTAGAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2032:4327..5860+

>mRNA_P-wetherbeei_contig2032.4.1 ID=mRNA_P-wetherbeei_contig2032.4.1|Name=mRNA_P-wetherbeei_contig2032.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=873bp|location=Sequence derived from alignment at P-wetherbeei_contig2032:4327..5860+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTACACGGTCTCTTCGACTTTCTGCTCGAGCAGACGAGCTTGTC
GACAGGCACGGGCCGCGCAGCGGACGTTCCGCTGCTGCTGAGCCGCCGCA
CCTTCCTCAACGGCACACTGAGACGCCTGCAGCCGCGCTTCCATGGCCAC
ATCACCCGCTCCCGGGACGCGTGCGCCGCCGCGCCGGCCGCCGCCGCAGC
CAGAGCCGCCGGAGCCGCCGTCACAGCATCAACGGGTGCCGCAGCCGCCG
CGGGCGCATTGGCTGCAGCCGCTTCCCGTGCCAGAAGCGGCAGAACCGGC
ACCGGCGGCGACGAAAGCGGCAGCGCTGCCGCGGCAGGCGAAATGCAGGC
GCTGGAGCTGGTGGGGCCGGTCATGCCATCCGCCGTGCGGGACATGACGG
CGGCCCTCGGCCGGCTGCAGGCGGCCGGGCAACGCCGGGCCGCCGCCGCC
ACCGCCAATGGTTCTGCGTCGGCCGGCTTTGGGGCGGGATCGGCTGAGGA
GGACGACGCGTACGACGATGGCTACAGCGAGGACAGCTACGACGCGGAGG
CGATGGCGACGGAGGGCTGTAGGCCGCCGGCACCGGCGGCGGCGGCGGCG
GCAGCAGCAGTGGCGGCCGAAGCGGATGGCGGGCTGTTCCGGGCAGCGGT
GCGAGTGGACGAAGATACTGTCTTCTTTAACGCTGCATGCACCACCCCTG
CCGCCACTGCGGCAGCGCCGTTCGGAGGCGGGGCAGCCAGAGGTGCTGCG
GTGGCTGCAGCAGCGGCGGGGCTGCCGCAGCGCGGAGGCTACGTCGTGGA
GCTGGTGGCACGGGCGGCGGAGGACGATCGAATCGTGTACGATTGCTGCA
TTGAAGATCCGCCGTGGCAGTGA
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