mRNA_P-wetherbeei_contig2032.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2032.3.1
Unique NamemRNA_P-wetherbeei_contig2032.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig2032.3.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.840e-20
Identity = 83/212 (39.15%), Postives = 108/212 (50.94%), Query Frame = 1 
Query:  196 ALAAWAAATMYWVHPSSALPPAGLSAQHTALEGLAKCPQRAAAA----APPHPQLARGAYNWTSFFWARRRDWEDAFRSLYYGLRVQAARAGRADSXXXXXXXXXXXXXXXXXXXXXVHSGYGGGRDASFYVRGPKLAALFCVLEPAPEGPPAXXXXXAPLVAVVSRSTRQLRRKLRDAGVSFRMPLDPAADGADGREQ--DEAVLREVEAL 813
            A+  W  AT+YW HP++ LP   L+AQ +A   +AK P  A  A    A P    A G   WTSFFW+RRRDWE AF SLYYGL +   R G   +  XXXXXXX              +  G      FY++ P     + ++     G            AV++RSTR+LR++L  AG+ F MPLDPA D  D +    DE VL E +A+
Sbjct:  645 AMEKWRKATLYWEHPATPLPQEALAAQKSAQSRVAKSPAHATKAQDSGARPGGSAASG---WTSFFWSRRRDWEQAFGSLYYGL-ISRNRGGGEGARGXXXXXXX------------XXAAEGEREGEGFYLQCPLYTVAWRLVRE--RGGAEDEGTRLVPAAVMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDAQASHADEDVLEEWKAM 838
[Close]
BLAST of mRNA_P-wetherbeei_contig2032.3.1 vs. uniprot
Match: D7FXK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK2_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.450e-19
Identity = 92/212 (43.40%), Postives = 117/212 (55.19%), Query Frame = 1 
Query:  196 ALAAWAAATMYWVHPSSALPPAGLSAQHTALEGLAKCPQRAAAA----APPHPQLARGAYNWTSFFWARRRDWEDAFRSLYYGLRVQAARAGRADSXXXXXXXXXXXXXXXXXXXXXVHSGYGGGRDASFYVRGPKLAALFCVLEP--APEGPPAXXXXXAPLVAVVSRSTRQLRRKLRDAGVSFRMPLDPAADGADGREQDEAVLREVEAL 813
            A+  W  AT+YW HP++ LP   L+AQ  A   +AK P  A  A    A P    A G   WTSFFW+RRRDWE AF SLYYGL +   R G   +    XXXXXXXXXXXXXXXXX            FY++ P    ++ ++      E          P  A+++RSTR+LR++L  AG+ F MPLDPA D  D  + DE VL E +A+
Sbjct:  339 AMEKWRKATLYWEHPATPLPQEALAAQKAAQSRVAKSPAHATKAQDSGARPGGSAASG---WTSFFWSRRRDWEQAFGSLYYGL-ISRNRGGGEGARGGRXXXXXXXXXXXXXXXXXX-----------FYLQCPLYTVVWTLVRERGGAEDDGTRRRRLVP-AALMTRSTRRLRKRLTAAGIEFGMPLDPAGDQRDA-QADEDVLEEWKAM 533
[Close]
BLAST of mRNA_P-wetherbeei_contig2032.3.1 vs. uniprot
Match: A0A835YIS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.560e-18
Identity = 73/214 (34.11%), Postives = 100/214 (46.73%), Query Frame = 1 
Query:  178 KAEDAPALAAWAAATMYWVHPSSALPPAGLSAQHTALEGLAKCPQRAAAAAPPHPQLARGAYNWTSFFWARRRDWEDAFRSLYYGLRVQAARAGRADSXXXXXXXXXXXXXXXXXXXXXVHSGYGGGRDASFYVRGPKLAALFCVLEPAPEGPPAXXXXXAPLVAVVSRSTRQLRRKLRDAGVSFRMPLDP-------AADGADGREQDEAVLR 798
            +A  A A++ W AATMYWVHP++ALPP+ +SAQ  A++ L++    A  A    P        W++F+  RR+DW++AFRSL+Y L      A                             G GGG   SFY+R       F     A             + AV++RS+RQ RR+L DAGV+F MPLD        +AD AD      A+ R
Sbjct:  120 RANVANAVSEWQAATMYWVHPATALPPSAMSAQGRAMDVLSQ----ADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYSLWSPGPTAAAHPGGT---------------------GGNGGGDACSFYLRTVTHTTFFHATTDA--------SGQRSVAAVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALAR 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2032.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K212_9PHAE3.840e-2039.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXK2_ECTSI1.450e-1943.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIS8_9STRA2.560e-1834.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2032contigP-wetherbeei_contig2032:3413..4276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size865
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002020.1
Cds size864
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.5904467-CDS-P-wetherbeei_contig2032:3412..42761683186196.5904467-CDS-P-wetherbeei_contig2032:3412..4276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2032 3413..4276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2032.3.1prot_P-wetherbeei_contig2032.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2032 3413..4276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2032.3.1

>prot_P-wetherbeei_contig2032.3.1 ID=prot_P-wetherbeei_contig2032.3.1|Name=mRNA_P-wetherbeei_contig2032.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
MALFVGGSAAVAAATAAGVSTGVVARAARRYSSAPRRAAEDGADADANAV
AAAATAAAAKAEDAPALAAWAAATMYWVHPSSALPPAGLSAQHTALEGLA
KCPQRAAAAAPPHPQLARGAYNWTSFFWARRRDWEDAFRSLYYGLRVQAA
RAGRADSDAGGGGGGDGGYGDGDGGGGGVHSGYGGGRDASFYVRGPKLAA
LFCVLEPAPEGPPAPGGEPAPLVAVVSRSTRQLRRKLRDAGVSFRMPLDP
AADGADGREQDEAVLREVEALGKHGGNVAGAGAGAGGG
back to top

mRNA from alignment at P-wetherbeei_contig2032:3413..4276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2032.3.1 ID=mRNA_P-wetherbeei_contig2032.3.1|Name=mRNA_P-wetherbeei_contig2032.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig2032:3413..4276+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTGTTCGTCGGCGGGAGCGCCGCCGTGGCCGCCGCCACCGCGGC
CGGCGTCAGCACCGGGGTGGTAGCGCGCGCTGCCCGGCGTTACAGCAGCG
CCCCTCGGCGAGCGGCAGAAGACGGTGCAGACGCCGACGCAAACGCCGTC
GCCGCGGCGGCGACGGCGGCGGCCGCAAAGGCAGAGGACGCTCCGGCGCT
GGCGGCATGGGCAGCGGCCACAATGTACTGGGTGCATCCGTCGAGCGCGC
TGCCGCCGGCGGGGCTGTCCGCGCAGCACACGGCGCTGGAGGGGCTGGCG
AAGTGCCCACAGCGGGCGGCGGCGGCCGCGCCGCCCCACCCCCAGCTGGC
CCGCGGCGCCTACAACTGGACGTCCTTCTTTTGGGCCCGCCGCCGCGACT
GGGAAGACGCCTTCCGCAGCCTCTACTACGGCCTACGGGTCCAAGCGGCG
CGCGCGGGACGCGCCGACAGCGACGCCGGCGGCGGTGGCGGCGGTGACGG
TGGCTATGGCGACGGCGACGGCGGCGGCGGCGGTGTTCACAGCGGTTACG
GCGGCGGGCGCGACGCGTCCTTCTATGTGCGGGGGCCAAAGCTGGCGGCG
CTCTTTTGCGTGCTCGAGCCGGCGCCAGAGGGCCCGCCGGCGCCGGGTGG
CGAGCCGGCGCCTCTTGTCGCCGTCGTCAGCCGATCAACGCGCCAGCTGC
GCAGGAAGCTGCGGGATGCCGGAGTTTCGTTTCGGATGCCGTTGGACCCG
GCCGCCGACGGTGCGGATGGGCGCGAGCAGGACGAGGCAGTCCTCCGGGA
GGTGGAGGCGCTTGGCAAGCACGGCGGCAACGTGGCGGGGGCGGGCGCGG
GTGCCGGTGGTGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2032:3413..4276+

>mRNA_P-wetherbeei_contig2032.3.1 ID=mRNA_P-wetherbeei_contig2032.3.1|Name=mRNA_P-wetherbeei_contig2032.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig2032:3413..4276+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTGTTCGTCGGCGGGAGCGCCGCCGTGGCCGCCGCCACCGCGGC
CGGCGTCAGCACCGGGGTGGTAGCGCGCGCTGCCCGGCGTTACAGCAGCG
CCCCTCGGCGAGCGGCAGAAGACGGTGCAGACGCCGACGCAAACGCCGTC
GCCGCGGCGGCGACGGCGGCGGCCGCAAAGGCAGAGGACGCTCCGGCGCT
GGCGGCATGGGCAGCGGCCACAATGTACTGGGTGCATCCGTCGAGCGCGC
TGCCGCCGGCGGGGCTGTCCGCGCAGCACACGGCGCTGGAGGGGCTGGCG
AAGTGCCCACAGCGGGCGGCGGCGGCCGCGCCGCCCCACCCCCAGCTGGC
CCGCGGCGCCTACAACTGGACGTCCTTCTTTTGGGCCCGCCGCCGCGACT
GGGAAGACGCCTTCCGCAGCCTCTACTACGGCCTACGGGTCCAAGCGGCG
CGCGCGGGACGCGCCGACAGCGACGCCGGCGGCGGTGGCGGCGGTGACGG
TGGCTATGGCGACGGCGACGGCGGCGGCGGCGGTGTTCACAGCGGTTACG
GCGGCGGGCGCGACGCGTCCTTCTATGTGCGGGGGCCAAAGCTGGCGGCG
CTCTTTTGCGTGCTCGAGCCGGCGCCAGAGGGCCCGCCGGCGCCGGGTGG
CGAGCCGGCGCCTCTTGTCGCCGTCGTCAGCCGATCAACGCGCCAGCTGC
GCAGGAAGCTGCGGGATGCCGGAGTTTCGTTTCGGATGCCGTTGGACCCG
GCCGCCGACGGTGCGGATGGGCGCGAGCAGGACGAGGCAGTCCTCCGGGA
GGTGGAGGCGCTTGGCAAGCACGGCGGCAACGTGGCGGGGGCGGGCGCGG
GTGCCGGTGGTGGC
back to top