mRNA_P-wetherbeei_contig2032.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2032.2.1
Unique NamemRNA_P-wetherbeei_contig2032.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2032.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2032contigP-wetherbeei_contig2032:2586..3187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size604
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.5444849-UTR-P-wetherbeei_contig2032:2585..26351683186196.5444849-UTR-P-wetherbeei_contig2032:2585..2635Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2032 2586..2635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.5540543-CDS-P-wetherbeei_contig2032:2635..31871683186196.5540543-CDS-P-wetherbeei_contig2032:2635..3187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2032 2636..3187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2032.2.1prot_P-wetherbeei_contig2032.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2032 2636..3187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2032.2.1

>prot_P-wetherbeei_contig2032.2.1 ID=prot_P-wetherbeei_contig2032.2.1|Name=mRNA_P-wetherbeei_contig2032.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MEDPEAFSVKRKPEGAPDQTEASCKTPRLEVESTGDEGTVAVLGQDDDLM
EEDDVVMQAADELVDRAEDEQENEREESEANAPQDRRSLLLGSLMASAPA
RGGAVPTRGATMSSQMLGERFASAAAFGSTLPPRDEDLDQRAAAAERDIH
EHVSLELERLADFHIQEPASAAVFLQHPPFSAGP
back to top

mRNA from alignment at P-wetherbeei_contig2032:2586..3187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2032.2.1 ID=mRNA_P-wetherbeei_contig2032.2.1|Name=mRNA_P-wetherbeei_contig2032.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=602bp|location=Sequence derived from alignment at P-wetherbeei_contig2032:2586..3187+ (Phaeothamnion wetherbeei SAG_119_79)
CGTAGTTGTAACCTGAGATTGCCCCCGCCTCTGCTCCCCCTCTAAGAGTG
ATGGAAGATCCAGAAGCCTTTTCAGTGAAGCGAAAGCCGGAAGGCGCACC
GGACCAAACAGAGGCGTCTTGTAAAACGCCGCGCCTGGAGGTTGAGAGCA
CGGGGGATGAAGGGACGGTCGCTGTGCTTGGGCAGGACGACGACTTAATG
GAGGAGGATGACGTTGTAATGCAGGCTGCTGACGAGCTCGTCGACCGCGC
CGAGGACGAGCAGGAAAACGAAAGAGAGGAGAGCGAGGCAAACGCGCCGC
AGGATCGGCGCTCCCTTCTGCTTGGTTCGCTCATGGCGAGCGCTCCGGCG
CGGGGCGGCGCAGTCCCGACTCGGGGCGCCACCATGTCCTCGCAGATGCT
CGGCGAAAGGTTTGCGAGCGCGGCGGCTTTTGGGTCCACGTTGCCTCCGC
GGGACGAGGATTTGGATCAGCGGGCAGCGGCCGCGGAGAGGGACATTCAC
GAGCATGTGAGCCTCGAGCTCGAGCGGCTGGCGGACTTTCACATCCAGGA
GCCGGCCAGCGCCGCCGTGTTCCTGCAGCACCCGCCGTTTTCCGCAGGCC
CC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2032:2586..3187+

>mRNA_P-wetherbeei_contig2032.2.1 ID=mRNA_P-wetherbeei_contig2032.2.1|Name=mRNA_P-wetherbeei_contig2032.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig2032:2586..3187+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGATCCAGAAGCCTTTTCAGTGAAGCGAAAGCCGGAAGGCGCACC
GGACCAAACAGAGGCGTCTTGTAAAACGCCGCGCCTGGAGGTTGAGAGCA
CGGGGGATGAAGGGACGGTCGCTGTGCTTGGGCAGGACGACGACTTAATG
GAGGAGGATGACGTTGTAATGCAGGCTGCTGACGAGCTCGTCGACCGCGC
CGAGGACGAGCAGGAAAACGAAAGAGAGGAGAGCGAGGCAAACGCGCCGC
AGGATCGGCGCTCCCTTCTGCTTGGTTCGCTCATGGCGAGCGCTCCGGCG
CGGGGCGGCGCAGTCCCGACTCGGGGCGCCACCATGTCCTCGCAGATGCT
CGGCGAAAGGTTTGCGAGCGCGGCGGCTTTTGGGTCCACGTTGCCTCCGC
GGGACGAGGATTTGGATCAGCGGGCAGCGGCCGCGGAGAGGGACATTCAC
GAGCATGTGAGCCTCGAGCTCGAGCGGCTGGCGGACTTTCACATCCAGGA
GCCGGCCAGCGCCGCCGTGTTCCTGCAGCACCCGCCGTTTTCCGCAGGCC
CC
back to top