mRNA_P-wetherbeei_contig20311.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20311.1.1
Unique NamemRNA_P-wetherbeei_contig20311.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20311.1.1 vs. uniprot
Match: A0A7X9AGP3_9BURK (Type II secretion system protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AGP3_9BURK)

HSP 1 Score: 60.8 bits (146), Expect = 7.440e-10
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 MVRRRGTTLVETLVVVFLFSLLTTVILGFYMFANRASQNHEQLSENYRKMLTVLDRLETLMQGSKI 198
            M R  GTTL ETLVV+ +FS L  +ILGFY+  +R +   EQ S +YR++L VLDR+ETL+  S++
Sbjct:    1 MKRSPGTTLTETLVVMAVFSTLMILILGFYIEGSRVTARQEQSSGSYRRVLQVLDRVETLLAFSRV 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20311.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X9AGP3_9BURK7.440e-1051.52Type II secretion system protein n=1 Tax=Burkholde... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20311contigP-wetherbeei_contig20311:194..394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size201
Hectar predicted targeting categorysignal anchor
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.4394538-CDS-P-wetherbeei_contig20311:193..3941683186196.4394538-CDS-P-wetherbeei_contig20311:193..394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20311 194..394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20311.1.1prot_P-wetherbeei_contig20311.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20311 194..394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20311.1.1

>prot_P-wetherbeei_contig20311.1.1 ID=prot_P-wetherbeei_contig20311.1.1|Name=mRNA_P-wetherbeei_contig20311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MVRRRGTTLVETLVVVFLFSLLTTVILGFYMFANRASQNHEQLSENYRKM
LTVLDRLETLMQGSKIL
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mRNA from alignment at P-wetherbeei_contig20311:194..394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20311.1.1 ID=mRNA_P-wetherbeei_contig20311.1.1|Name=mRNA_P-wetherbeei_contig20311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig20311:194..394+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAAGGCGGCGCGGCACGACGCTCGTTGAGACCCTGGTTGTGGTGTT
TTTGTTCTCGCTCCTCACAACCGTCATCCTGGGCTTTTACATGTTCGCCA
ACCGGGCCAGCCAAAATCACGAGCAGCTCTCGGAGAACTATCGCAAGATG
CTGACCGTCCTCGACCGCCTGGAGACCCTGATGCAGGGCTCCAAAATTCT
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20311:194..394+

>mRNA_P-wetherbeei_contig20311.1.1 ID=mRNA_P-wetherbeei_contig20311.1.1|Name=mRNA_P-wetherbeei_contig20311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig20311:194..394+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAAGGCGGCGCGGCACGACGCTCGTTGAGACCCTGGTTGTGGTGTT
TTTGTTCTCGCTCCTCACAACCGTCATCCTGGGCTTTTACATGTTCGCCA
ACCGGGCCAGCCAAAATCACGAGCAGCTCTCGGAGAACTATCGCAAGATG
CTGACCGTCCTCGACCGCCTGGAGACCCTGATGCAGGGCTCCAAAATTCT
G
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