mRNA_P-wetherbeei_contig203.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig203.4.1
Unique NamemRNA_P-wetherbeei_contig203.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig203.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig203contigP-wetherbeei_contig203:10546..11783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1239
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1215
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.0378625-UTR-P-wetherbeei_contig203:10545..105681683186196.0378625-UTR-P-wetherbeei_contig203:10545..10568Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig203 10546..10568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.0482273-CDS-P-wetherbeei_contig203:10568..117831683186196.0482273-CDS-P-wetherbeei_contig203:10568..11783Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig203 10569..11783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig203.4.1prot_P-wetherbeei_contig203.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig203 10569..11783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig203.4.1

>prot_P-wetherbeei_contig203.4.1 ID=prot_P-wetherbeei_contig203.4.1|Name=mRNA_P-wetherbeei_contig203.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=405bp
MGPHRARRRRQRLSDLQLLGSLLLATTFSSRASSSTCFTFTGFARITPEL
RRATDGERTWRRWRRRPLMCSAIGNSVATSRSPGFAARPLVPLSPLAPLP
RDELEGLSYWPIDTGRLALPCSIKIAPRADGRSLFYANGTEIFTTMRGGI
LPRAGAESSTSEGVAAAGPAIDWAHAVSTSIRLVGELSIAKPAYLKVVET
AMGASASAASGGGGDRKGESGSCELLITQFGLARSGGLASVDFSAISARP
RLTRLMSGPLQWPNEVTAVPAGALAAIGVPLPPSPKMRSLWARSGAIHAR
SHSGPPPPLATLNGGTAARISEMSATTEAAAGAAAAQGAPALQPPPPPTP
PLELLASGLLVADGFLLPGRADGGVYLVLPPGTGGQAASGTGMAAESVAA
AAAAR
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mRNA from alignment at P-wetherbeei_contig203:10546..11783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig203.4.1 ID=mRNA_P-wetherbeei_contig203.4.1|Name=mRNA_P-wetherbeei_contig203.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1238bp|location=Sequence derived from alignment at P-wetherbeei_contig203:10546..11783+ (Phaeothamnion wetherbeei SAG_119_79)
CGGAGAACTGTAAAGGCTGCGAAATGGGCCCTCACCGGGCGCGGAGGCGC
AGACAAAGGCTGTCCGACCTCCAGCTCCTCGGATCGCTGCTCTTGGCGAC
CACCTTCTCCTCGCGCGCTTCCTCCAGCACATGTTTTACTTTCACCGGCT
TCGCTCGCATCACGCCTGAACTCAGGCGCGCCACGGATGGGGAAAGAACA
TGGCGGCGATGGCGAAGAAGGCCATTGATGTGCAGCGCCATCGGAAACAG
CGTCGCAACCTCCCGTTCGCCCGGCTTTGCAGCACGTCCTCTTGTCCCCC
TGTCGCCGCTCGCACCCCTCCCGCGGGACGAGCTGGAGGGCCTCTCGTAC
TGGCCGATTGACACGGGCAGGCTGGCGCTGCCCTGCAGCATCAAAATTGC
TCCACGCGCGGACGGGCGCTCTCTCTTCTATGCCAACGGGACGGAAATCT
TCACAACGATGCGGGGAGGAATTCTTCCGCGAGCAGGTGCGGAAAGCAGT
ACCAGCGAAGGCGTTGCGGCGGCGGGTCCAGCTATCGACTGGGCTCACGC
CGTCTCTACGTCAATCCGGCTCGTCGGTGAGCTTTCCATCGCCAAGCCCG
CTTACCTCAAGGTGGTCGAAACCGCCATGGGCGCTTCCGCCTCCGCGGCC
AGCGGCGGCGGAGGCGATAGGAAAGGAGAAAGCGGCTCCTGCGAGCTCTT
AATCACCCAGTTCGGCCTGGCCCGCAGCGGCGGGCTTGCCAGTGTCGACT
TCAGTGCTATTTCGGCGCGGCCGCGGCTCACCCGGCTAATGTCGGGCCCA
TTGCAGTGGCCGAACGAGGTGACAGCCGTCCCCGCCGGTGCCTTGGCGGC
AATCGGTGTGCCGCTGCCACCATCACCGAAAATGCGGTCACTTTGGGCAC
GTTCTGGTGCCATTCATGCACGTTCCCATTCTGGACCTCCGCCCCCACTT
GCCACATTGAACGGTGGTACCGCGGCGAGGATAAGCGAGATGTCTGCCAC
GACCGAAGCTGCCGCCGGCGCAGCTGCAGCACAAGGTGCGCCAGCGCTGC
AGCCTCCGCCGCCGCCGACACCGCCCCTGGAGCTCCTCGCTTCGGGGCTG
CTGGTGGCCGACGGCTTTCTCCTGCCCGGGCGCGCCGACGGTGGAGTTTA
CCTGGTGCTGCCGCCTGGCACAGGGGGTCAGGCTGCGTCGGGGACGGGAA
TGGCGGCCGAGTCGGTAGCAGCGGCAGCGGCAGCACGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig203:10546..11783+

>mRNA_P-wetherbeei_contig203.4.1 ID=mRNA_P-wetherbeei_contig203.4.1|Name=mRNA_P-wetherbeei_contig203.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1215bp|location=Sequence derived from alignment at P-wetherbeei_contig203:10546..11783+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCCTCACCGGGCGCGGAGGCGCAGACAAAGGCTGTCCGACCTCCA
GCTCCTCGGATCGCTGCTCTTGGCGACCACCTTCTCCTCGCGCGCTTCCT
CCAGCACATGTTTTACTTTCACCGGCTTCGCTCGCATCACGCCTGAACTC
AGGCGCGCCACGGATGGGGAAAGAACATGGCGGCGATGGCGAAGAAGGCC
ATTGATGTGCAGCGCCATCGGAAACAGCGTCGCAACCTCCCGTTCGCCCG
GCTTTGCAGCACGTCCTCTTGTCCCCCTGTCGCCGCTCGCACCCCTCCCG
CGGGACGAGCTGGAGGGCCTCTCGTACTGGCCGATTGACACGGGCAGGCT
GGCGCTGCCCTGCAGCATCAAAATTGCTCCACGCGCGGACGGGCGCTCTC
TCTTCTATGCCAACGGGACGGAAATCTTCACAACGATGCGGGGAGGAATT
CTTCCGCGAGCAGGTGCGGAAAGCAGTACCAGCGAAGGCGTTGCGGCGGC
GGGTCCAGCTATCGACTGGGCTCACGCCGTCTCTACGTCAATCCGGCTCG
TCGGTGAGCTTTCCATCGCCAAGCCCGCTTACCTCAAGGTGGTCGAAACC
GCCATGGGCGCTTCCGCCTCCGCGGCCAGCGGCGGCGGAGGCGATAGGAA
AGGAGAAAGCGGCTCCTGCGAGCTCTTAATCACCCAGTTCGGCCTGGCCC
GCAGCGGCGGGCTTGCCAGTGTCGACTTCAGTGCTATTTCGGCGCGGCCG
CGGCTCACCCGGCTAATGTCGGGCCCATTGCAGTGGCCGAACGAGGTGAC
AGCCGTCCCCGCCGGTGCCTTGGCGGCAATCGGTGTGCCGCTGCCACCAT
CACCGAAAATGCGGTCACTTTGGGCACGTTCTGGTGCCATTCATGCACGT
TCCCATTCTGGACCTCCGCCCCCACTTGCCACATTGAACGGTGGTACCGC
GGCGAGGATAAGCGAGATGTCTGCCACGACCGAAGCTGCCGCCGGCGCAG
CTGCAGCACAAGGTGCGCCAGCGCTGCAGCCTCCGCCGCCGCCGACACCG
CCCCTGGAGCTCCTCGCTTCGGGGCTGCTGGTGGCCGACGGCTTTCTCCT
GCCCGGGCGCGCCGACGGTGGAGTTTACCTGGTGCTGCCGCCTGGCACAG
GGGGTCAGGCTGCGTCGGGGACGGGAATGGCGGCCGAGTCGGTAGCAGCG
GCAGCGGCAGCACGC
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