mRNA_P-wetherbeei_contig203.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig203.3.1
Unique NamemRNA_P-wetherbeei_contig203.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig203.3.1 vs. uniprot
Match: A0A7S2DLE4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLE4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.710e-14
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 2 
Query:  422 SAEDKAIAKLKDLGRAMAQGPRLYVGL-KELSKREQAAELVARLRKAGAAFAGSVPTNAEIAEACRKTDLQKSLDGIDTGLILSPGKRRRTKAAT 703
            S ++K + KL+ + RAM  GP ++ GL KE+   EQ A L  RL++AGA F G +PT AEI  A R  D  + LDGIDT LI+S  KRRRT+  T
Sbjct:   42 SVQEKRVKKLRAMVRAMGLGPTVFRGLSKEIPWPEQEAILRERLQEAGALFKGQIPTQAEIVAAERIRDRARDLDGIDTSLIISSSKRRRTEKQT 136
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BLAST of mRNA_P-wetherbeei_contig203.3.1 vs. uniprot
Match: F0W364_9STRA (AlNc14C12G1441 protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W364_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.760e-5
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 2 
Query:  440 IAKLKDLGRAMA-QGPRLYVGLKELSKREQAAELVA-RLRKAGAAF-AGSVPTNAEIAEACRKTDLQKSLDGIDTGLILSPGKRRRT-KAATIEAKIEAVGA 733
            +  LK+L R +    P +Y  L+  +  E+A +L+  RL+++G +F  G  P+  +IA A +K D +K L+GIDT LIL  G+RRRT K   IE      GA
Sbjct:  195 LQALKELARVVGILNPSIYRKLRTATDDEEAEDLLRDRLKESGISFQGGKYPSKFDIANAKKKKDAEKELEGIDTNLILIGGRRRRTQKMYPIETSDSDAGA 296
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BLAST of mRNA_P-wetherbeei_contig203.3.1 vs. uniprot
Match: A0A024GVG1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GVG1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.220e-5
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 2 
Query:  422 SAEDKAIAKLKDLGR-AMAQGPRLYVGLKELSKREQAAELVA-RLRKAGAAFAGS-VPTNAEIAEACRKTDLQKSLDGIDTGLILSPGKRRRT 691
            S        LK+L R A    P +Y  LK ++  ++A +LV  RL+++G +F G   P+  +IA A +K D Q+ L+GIDT LI+  G+RR T
Sbjct:  134 SRNSDGFQALKELARVAGVLNPAIYRKLKSVTNEKEAEDLVRDRLKQSGISFLGDKYPSKLDIANAKKKKDAQRELEGIDTNLIVHEGRRRCT 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig203.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2DLE4_9STRA5.710e-1449.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0W364_9STRA3.760e-539.22AlNc14C12G1441 protein n=1 Tax=Albugo laibachii Nc... [more]
A0A024GVG1_9STRA9.220e-538.71Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig203contigP-wetherbeei_contig203:9386..10491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog272952.HpaP806625
Model size900
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.8e-10
EggNOG OGs2E25G@1|root,2S9DY@2759|Eukaryota,3QASA@4776|Peronosporales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001240.1
Cds size756
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.129234-UTR-P-wetherbeei_contig203:9385..94501683186196.129234-UTR-P-wetherbeei_contig203:9385..9450Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig203 9386..9450 -
1683186196.1588173-UTR-P-wetherbeei_contig203:10412..104911683186196.1588173-UTR-P-wetherbeei_contig203:10412..10491Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig203 10413..10491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.1397333-CDS-P-wetherbeei_contig203:9450..98051683186196.1397333-CDS-P-wetherbeei_contig203:9450..9805Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig203 9451..9805 -
1683186196.1491766-CDS-P-wetherbeei_contig203:10011..104121683186196.1491766-CDS-P-wetherbeei_contig203:10011..10412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig203 10012..10412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig203.3.1prot_P-wetherbeei_contig203.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig203 9451..10412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig203.3.1

>prot_P-wetherbeei_contig203.3.1 ID=prot_P-wetherbeei_contig203.3.1|Name=mRNA_P-wetherbeei_contig203.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MTEAASESPPKSSDLEKVAKRILAHGPEAEELTMRQVRAKVEDELKLKAG
RLSLADLKESFKSMVIAILQKKRAREREAAGEAFLDSKVENPGGKSRKRS
RPAEGGNPRAPEPPSAEDKAIAKLKDLGRAMAQGPRLYVGLKELSKREQA
AELVARLRKAGAAFAGSVPTNAEIAEACRKTDLQKSLDGIDTGLILSPGK
RRRTKAATIEAKIEAVGARVGGGGGRGDGSSSGGPSGGGESGEDEEEEFG
G*
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mRNA from alignment at P-wetherbeei_contig203:9386..10491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig203.3.1 ID=mRNA_P-wetherbeei_contig203.3.1|Name=mRNA_P-wetherbeei_contig203.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig203:9386..10491- (Phaeothamnion wetherbeei SAG_119_79)
GCAAGTTTTGAAAAACGAGGTCTTCCGACCTGTTTGCAATTGCACGTTGG
TCTTTGGCAGAGCCGTCTACGTCCGGCGCATGACTGAGGCGGCTAGCGAG
TCTCCCCCAAAGTCGTCTGATCTGGAAAAGGTCGCCAAGCGGATCCTTGC
CCATGGACCTGAAGCGGAGGAGCTGACCATGCGGCAAGTCCGGGCCAAGG
TGGAAGACGAGCTTAAGCTGAAAGCAGGAAGGTTGAGTTTGGCCGACTTG
AAGGAATCCTTCAAGTCGATGGTGATTGCCATCCTGCAGAAGAAGCGAGC
GCGAGAGCGAGAGGCAGCAGGAGAGGCTTTCCTGGACAGCAAGGTCGAGA
ATCCCGGCGGAAAGTCACGCAAGCGTAGCAGGCCGGCAGAAGGCGGAAAC
CCGCGGGCGCCCGAGCCGCCGAGCGCTGAAGACAAGGCGATCGCCAAGCT
GAAGGACCTCGGGCGAGCCATGGCCCAAGGGTGAGTGTCGTTCGCCATCC
CATCTCGCTCTCAACAAACTCTTTAGCAATATGCTGTTTTGTGTCCTTCT
CCGAGTCGCCTCTGATGACTTTCAGCCCTTCTCCTCCTCATCTATTCTCC
GTCTCCTTTCTCTCTTTTCGCCGCCGTTGTCCGCTCTCTCGTCCCGCTGC
GCCCGCATCCGCCCCCGCCTCGCCATCTATACGCAGGCCGCGGCTCTACG
TCGGCCTCAAGGAGCTCTCCAAGCGTGAGCAGGCTGCCGAGCTTGTGGCC
CGCCTGCGCAAGGCCGGTGCTGCCTTCGCGGGCTCCGTCCCCACCAACGC
CGAAATCGCTGAGGCGTGCCGCAAGACTGACCTCCAAAAGTCTTTGGATG
GCATCGACACGGGCCTCATCCTCAGCCCAGGCAAGCGCCGGCGGACGAAG
GCGGCGACAATAGAAGCGAAAATAGAGGCGGTGGGAGCACGGGTCGGCGG
CGGCGGCGGCCGAGGCGATGGGAGCAGCAGCGGCGGCCCGAGTGGCGGCG
GCGAATCCGGCGAAGATGAAGAGGAAGAGTTTGGCGGATAGGCATATTGG
TGGCAATCGCTCCCGCGCTCGCCCTTGCGGACATGGTAAAACAAAGATGA
GTCACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig203:9386..10491-

>mRNA_P-wetherbeei_contig203.3.1 ID=mRNA_P-wetherbeei_contig203.3.1|Name=mRNA_P-wetherbeei_contig203.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig203:9386..10491- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGAGGCGGCTAGCGAGTCTCCCCCAAAGTCGTCTGATCTGGAAAA
GGTCGCCAAGCGGATCCTTGCCCATGGACCTGAAGCGGAGGAGCTGACCA
TGCGGCAAGTCCGGGCCAAGGTGGAAGACGAGCTTAAGCTGAAAGCAGGA
AGGTTGAGTTTGGCCGACTTGAAGGAATCCTTCAAGTCGATGGTGATTGC
CATCCTGCAGAAGAAGCGAGCGCGAGAGCGAGAGGCAGCAGGAGAGGCTT
TCCTGGACAGCAAGGTCGAGAATCCCGGCGGAAAGTCACGCAAGCGTAGC
AGGCCGGCAGAAGGCGGAAACCCGCGGGCGCCCGAGCCGCCGAGCGCTGA
AGACAAGGCGATCGCCAAGCTGAAGGACCTCGGGCGAGCCATGGCCCAAG
GGCCGCGGCTCTACGTCGGCCTCAAGGAGCTCTCCAAGCGTGAGCAGGCT
GCCGAGCTTGTGGCCCGCCTGCGCAAGGCCGGTGCTGCCTTCGCGGGCTC
CGTCCCCACCAACGCCGAAATCGCTGAGGCGTGCCGCAAGACTGACCTCC
AAAAGTCTTTGGATGGCATCGACACGGGCCTCATCCTCAGCCCAGGCAAG
CGCCGGCGGACGAAGGCGGCGACAATAGAAGCGAAAATAGAGGCGGTGGG
AGCACGGGTCGGCGGCGGCGGCGGCCGAGGCGATGGGAGCAGCAGCGGCG
GCCCGAGTGGCGGCGGCGAATCCGGCGAAGATGAAGAGGAAGAGTTTGGC
GGATAG
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