mRNA_P-wetherbeei_contig203.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig203.2.1
Unique NamemRNA_P-wetherbeei_contig203.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig203.2.1 vs. uniprot
Match: D7FGT3_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGT3_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-7
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:  325 QANMHSTLAFSTFFNAALILTVAGGGAAGLSLPARAAWLLAAVAGAQVPLGLLKLRRQDKTFEKFGVR 528
            Q +M+  +AFSTF NAALIL+      + L LP R AW LA V G ++P+GL K+R+QD+ +  +G++
Sbjct:  692 QTSMYDAIAFSTFLNAALILSATLSAGSPL-LPVRVAWTLAGVFGLRIPVGLFKIRKQDQKYSTYGLK 758
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig203.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGT3_ECTSI2.110e-745.59ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig203contigP-wetherbeei_contig203:1416..2099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FGT3
PFAMsABC1
Model size684
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.72e-10
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size198
COG categoryE
BRITEko00000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.0793076-UTR-P-wetherbeei_contig203:1415..17481683186196.0793076-UTR-P-wetherbeei_contig203:1415..1748Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig203 1416..1748 +
1683186196.1003954-UTR-P-wetherbeei_contig203:1946..20991683186196.1003954-UTR-P-wetherbeei_contig203:1946..2099Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig203 1947..2099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.0906947-CDS-P-wetherbeei_contig203:1748..19461683186196.0906947-CDS-P-wetherbeei_contig203:1748..1946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig203 1749..1946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig203.2.1prot_P-wetherbeei_contig203.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig203 1749..1946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig203.2.1

>prot_P-wetherbeei_contig203.2.1 ID=prot_P-wetherbeei_contig203.2.1|Name=mRNA_P-wetherbeei_contig203.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MHSTLAFSTFFNAALILTVAGGGAAGLSLPARAAWLLAAVAGAQVPLGLL
KLRRQDKTFEKFGVR*
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mRNA from alignment at P-wetherbeei_contig203:1416..2099+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig203.2.1 ID=mRNA_P-wetherbeei_contig203.2.1|Name=mRNA_P-wetherbeei_contig203.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig203:1416..2099+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAGTCGGGCTGGCTGGCTAGCAGATTGGCGACTAACATGGTAGCCGCT
TTTGGTCGTCTTTTGCTGCCCCTGTCGCTGCCGCCACCGCAGCCGCCGAT
TTATCTCTGTGTCGTTTCCCTATGTGTTGGGCTCTTGGGTCGGCTGCCGA
TCCTGCCGGATTTTTGCTGTTCCTGATGCGGTGGTGTAGTGCATAGAGCT
TTTAGCCCCGCGTCGTCTGCGTGGGGATCATCGCTGACCCGTGATCTCTT
GTTCGCCAACAGCCCCAACCTTTGGCATCCACTTTTCTACCTGCACGTTT
CTCGAATTGTTACGGAAACCGCGGCAGGCCAACATGCACTCAACACTGGC
GTTCTCGACATTCTTCAACGCGGCGCTGATCTTGACGGTGGCCGGCGGCG
GCGCGGCAGGGCTGTCGTTACCGGCACGGGCGGCGTGGCTGCTGGCGGCG
GTGGCGGGGGCGCAGGTTCCCCTCGGGCTTTTGAAGCTGCGACGACAAGA
CAAGACCTTTGAAAAGTTCGGGGTCCGATAATAATGGTGATGGAAGCGGC
GGGTGGGCCATTTCGGGGCTGAGGCGGCTTGCGTTGCTGTGTTTTTGCTC
TGCCCCTTTAGACCTACGCTATATAGAGAGCGAAAAATAATAGAGATTTG
AACAACGTGGTGACGTTGCTTTTGTCACCGCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig203:1416..2099+

>mRNA_P-wetherbeei_contig203.2.1 ID=mRNA_P-wetherbeei_contig203.2.1|Name=mRNA_P-wetherbeei_contig203.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig203:1416..2099+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTCAACACTGGCGTTCTCGACATTCTTCAACGCGGCGCTGATCTT
GACGGTGGCCGGCGGCGGCGCGGCAGGGCTGTCGTTACCGGCACGGGCGG
CGTGGCTGCTGGCGGCGGTGGCGGGGGCGCAGGTTCCCCTCGGGCTTTTG
AAGCTGCGACGACAAGACAAGACCTTTGAAAAGTTCGGGGTCCGATAA
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