mRNA_P-wetherbeei_contig20293.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20293.3.1
Unique NamemRNA_P-wetherbeei_contig20293.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A3C0TYY4_9PROT (Flagellar basal body rod protein FlgB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYY4_9PROT)

HSP 1 Score: 107 bits (266), Expect = 2.910e-28
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKRGSTSQIAMTNPLHLKG 210
            ME   APLFAA+R +MEWLSERQK+L+ENIANADTPG++ARDLKPVDF + LK  + +++A+TNP+H+KG
Sbjct:    1 MELNKAPLFAAMRAKMEWLSERQKILAENIANADTPGFKARDLKPVDFTEYLKNHAATELALTNPMHIKG 70          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A352KGW1_9PROT (Flagellar basal body rod protein FlgB n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KGW1_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 1.560e-18
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLK-RGSTSQIAMTNPLHLKG 210
            M A   P+F+A+R ++ WLS RQK++SENIANA+TPG++AR+LKPVDF K+L+ +G    + +TN  H+ G
Sbjct:    1 MSANAFPIFSAIRTKLAWLSARQKVVSENIANANTPGFRARELKPVDFRKMLENQGQMVGLRVTNARHMSG 71          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A537KVL9_9PROT (Flagellar basal body rod protein FlgB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537KVL9_9PROT)

HSP 1 Score: 77.8 bits (190), Expect = 9.670e-17
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKRGSTS-QIAMTNPLHL 204
            M     P+F+ LR RM W  ERQ+LL+EN+ANADTP Y+ RDL P+DF K +++ S   Q+A+T+P HL
Sbjct:    1 MAISDLPIFSMLRTRMNWHQERQRLLAENVANADTPAYRPRDLAPLDFGKQVQQASGQLQLALTSPAHL 69          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A2A5ETZ6_9HYPH (Flagellar basal body rod protein FlgB n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ETZ6_9HYPH)

HSP 1 Score: 77.8 bits (190), Expect = 1.040e-16
Identity = 34/69 (49.28%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   16 APLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKRGSTSQIAM----TNPLHLKG 210
            +P+F+ ++ RM WL++RQ++++EN+ANADTP Y A+DL   DF  +L+RGS+S   +    TNPLHL+G
Sbjct:    6 SPIFSMMKERMHWLADRQRVIAENVANADTPNYIAKDLAEPDFSAMLRRGSSSASVLSAVQTNPLHLRG 74          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A7V9S9X0_9PROT (Flagellar basal body rod protein FlgB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V9S9X0_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.850e-16
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKR-GSTSQIAMTNPLHL 204
            M     PL + LR RM WL++RQ LLS+N+ANADTPGY A+DLK +DF K L++ GS+S +  TN  H+
Sbjct:    1 MNLPDVPLLSKLRERMTWLNQRQDLLSQNVANADTPGYVAKDLKALDFDKALRQSGSSSSMLTTNSRHI 69          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A522A7I5_9PROT (Flagellar basal body rod protein FlgB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A522A7I5_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 2.090e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKRGSTS---QIAMTNPLHLKG 210
            M+     LF     +M+W S+RQK+LS+N+ANADTP Y+ARDLK +DF K+L+ G+T    ++A TNP+HL G
Sbjct:    1 MDLDNLTLFKMAMTKMDWASQRQKVLSQNVANADTPDYKARDLKKLDFKKILE-GTTPAPVKVAQTNPMHLPG 72          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A8I1RNW9_9PROT (Flagellar basal body rod protein FlgB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1RNW9_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 2.140e-16
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKR----GST-SQIAMTNPLHL 204
            M+    PLF  LR RM WL+ RQ +LS N+ANADTPGY ARD+KP+DF  LLKR    G+T   + +T+P H+
Sbjct:    1 MQLSSIPLFDVLRERMAWLNTRQNVLSTNVANADTPGYGARDIKPMDFAALLKRAAGTGATPGALTVTDPHHI 73          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: UPI0004711BC9 (flagellar basal body rod protein FlgB n=1 Tax=Sneathiella glossodoripedis TaxID=418853 RepID=UPI0004711BC9)

HSP 1 Score: 76.3 bits (186), Expect = 3.890e-16
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKRGS--TSQIAMTNPLHL 204
            M  K  PL +AL  RM+WLS+RQ +LS+NIAN+DTPGYQA DLKP  F  ++KR S  T  +A T+  H+
Sbjct:    1 MSLKNIPLLSALTERMKWLSQRQSVLSQNIANSDTPGYQASDLKPQKFKDMVKRPSEVTMNLAKTSEGHI 70          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: A0A2E5BRP8_9HYPH (Flagellar basal body rod protein FlgB n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BRP8_9HYPH)

HSP 1 Score: 75.9 bits (185), Expect = 5.780e-16
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   16 APLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKRGSTS---QIAMTNPLHL 204
            +P+F+ ++ RM WL+ERQ+++SEN+ANADTP Y ARDLK  DF  LL R  TS   Q A T+P H+
Sbjct:    6 SPIFSMMKERMHWLAERQRVISENVANADTPNYVARDLKEPDFXTLLTRRRTSNLLQAAKTDPAHI 71          
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Match: UPI00146AFF58 (flagellar basal body rod protein FlgB n=1 Tax=Sneathiella limimaris TaxID=1964213 RepID=UPI00146AFF58)

HSP 1 Score: 75.5 bits (184), Expect = 7.790e-16
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHKLLKRGSTSQIAMTN 192
            M  K  PLF+AL  RM+WLS+RQ +LS+NIAN+DTPGY+A DLKP  F  L+K    +++ M +
Sbjct:    1 MSLKSIPLFSALTERMKWLSQRQSVLSQNIANSDTPGYRASDLKPQSFEDLVKGSKEAKVYMAS 64          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20293.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYY4_9PROT2.910e-2867.14Flagellar basal body rod protein FlgB n=1 Tax=Alph... [more]
A0A352KGW1_9PROT1.560e-1852.11Flagellar basal body rod protein FlgB n=2 Tax=Alph... [more]
A0A537KVL9_9PROT9.670e-1752.17Flagellar basal body rod protein FlgB n=1 Tax=Alph... [more]
A0A2A5ETZ6_9HYPH1.040e-1649.28Flagellar basal body rod protein FlgB n=1 Tax=Rhod... [more]
A0A7V9S9X0_9PROT1.850e-1653.62Flagellar basal body rod protein FlgB n=1 Tax=Alph... [more]
A0A522A7I5_9PROT2.090e-1650.68Flagellar basal body rod protein FlgB n=1 Tax=Rhod... [more]
A0A8I1RNW9_9PROT2.140e-1653.42Flagellar basal body rod protein FlgB n=1 Tax=Alph... [more]
UPI0004711BC93.890e-1654.29flagellar basal body rod protein FlgB n=1 Tax=Snea... [more]
A0A2E5BRP8_9HYPH5.780e-1654.55Flagellar basal body rod protein FlgB n=1 Tax=Rhod... [more]
UPI00146AFF587.790e-1653.13flagellar basal body rod protein FlgB n=1 Tax=Snea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20293contigP-wetherbeei_contig20293:1023..1232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207063.P24_11025
Preferred nameflgB
PFAMsFlg_bb_rod
Model size210
Max annot lvl204441|Rhodospirillales
KEGG koko:K02387
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.51e-16
EggNOG OGsCOG1815@1|root,COG1815@2|Bacteria,1N1G1@1224|Proteobacteria,2UCJ4@28211|Alphaproteobacteria,2JTYT@204441|Rhodospirillales
DescriptionStructural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body
Cds size210
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.8697324-CDS-P-wetherbeei_contig20293:1022..12321683186195.8697324-CDS-P-wetherbeei_contig20293:1022..1232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20293 1023..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20293.3.1prot_P-wetherbeei_contig20293.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20293 1023..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20293.3.1

>prot_P-wetherbeei_contig20293.3.1 ID=prot_P-wetherbeei_contig20293.3.1|Name=mRNA_P-wetherbeei_contig20293.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MEAKGAPLFAALRVRMEWLSERQKLLSENIANADTPGYQARDLKPVDFHK
LLKRGSTSQIAMTNPLHLKG
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mRNA from alignment at P-wetherbeei_contig20293:1023..1232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20293.3.1 ID=mRNA_P-wetherbeei_contig20293.3.1|Name=mRNA_P-wetherbeei_contig20293.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig20293:1023..1232+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCTAAGGGCGCACCCCTGTTTGCGGCACTTCGGGTCAGAATGGA ATGGTTATCCGAACGGCAGAAATTGCTTTCGGAAAACATCGCCAATGCGG ACACGCCGGGCTATCAGGCCCGTGATCTGAAGCCGGTGGATTTTCATAAA CTGTTGAAGCGTGGCTCAACATCGCAAATAGCCATGACAAATCCGCTACA TTTGAAAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20293:1023..1232+

>mRNA_P-wetherbeei_contig20293.3.1 ID=mRNA_P-wetherbeei_contig20293.3.1|Name=mRNA_P-wetherbeei_contig20293.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig20293:1023..1232+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCTAAGGGCGCACCCCTGTTTGCGGCACTTCGGGTCAGAATGGA
ATGGTTATCCGAACGGCAGAAATTGCTTTCGGAAAACATCGCCAATGCGG
ACACGCCGGGCTATCAGGCCCGTGATCTGAAGCCGGTGGATTTTCATAAA
CTGTTGAAGCGTGGCTCAACATCGCAAATAGCCATGACAAATCCGCTACA
TTTGAAAGGC
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