mRNA_P-wetherbeei_contig20279.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20279.1.1
Unique NamemRNA_P-wetherbeei_contig20279.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20279.1.1 vs. uniprot
Match: A0A7X9KJ79_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KJ79_9ACTN)

HSP 1 Score: 432 bits (1111), Expect = 7.450e-150
Identity = 227/236 (96.19%), Postives = 231/236 (97.88%), Query Frame = 1 
Query:    1 AAAAALVLVVGLTTIARRDTPPSATXXXXXXXXXXXXXXXTGLPAELLDRWVGATPPSVNTPTPAAPAFVVFAADRVTLEHSSGGIVNDFTSDVTVAKPGELELRLTGQVGRCVAGATGDYRWTLSPQATTLTLEAIDDECPDRAAALAGTWTHTDCPTGGDDCLGFLEAGTYASVNFDPFDSDDYGQVIYTVPDGWTSTLDDKDRLTLLPPDGDETGIHGVYLFADAAATTTDCP 708
            AAAAA+VL+VGLTTIARRDTPPSATXXXXXXXXXXXXXX TGLP ELLDRWVGATPPSVNTP P+APAFVVFAADRVTLEH SGGIVNDFTSDVTVA+PGELELRLTGQVGRCVAGATGDYRWTLSPQATTLTLEAIDDECPDRAAALAGTWTHTDCPT GDDCLGFLEAGTYASVNFDPFDSDDYGQVIYTVPDGWTSTLDDKDRLTLLPPDGDETGIHGVYLFADAAATTTDCP
Sbjct:   64 AAAAAVVLIVGLTTIARRDTPPSATXXXXXXXXXXXXXXPTGLPTELLDRWVGATPPSVNTPNPSAPAFVVFAADRVTLEHLSGGIVNDFTSDVTVARPGELELRLTGQVGRCVAGATGDYRWTLSPQATTLTLEAIDDECPDRAAALAGTWTHTDCPTRGDDCLGFLEAGTYASVNFDPFDSDDYGQVIYTVPDGWTSTLDDKDRLTLLPPDGDETGIHGVYLFADAAATTTDCP 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20279.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X9KJ79_9ACTN7.450e-15096.19Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20279contigP-wetherbeei_contig20279:65..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size708
Hectar predicted targeting categorysignal peptide
Exons1
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.4410086-CDS-P-wetherbeei_contig20279:64..7721683186195.4410086-CDS-P-wetherbeei_contig20279:64..772Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20279 65..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20279.1.1prot_P-wetherbeei_contig20279.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20279 65..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20279.1.1

>prot_P-wetherbeei_contig20279.1.1 ID=prot_P-wetherbeei_contig20279.1.1|Name=mRNA_P-wetherbeei_contig20279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
AAAAALVLVVGLTTIARRDTPPSATTPPSTSVAPNPTVAPTGLPAELLDR
WVGATPPSVNTPTPAAPAFVVFAADRVTLEHSSGGIVNDFTSDVTVAKPG
ELELRLTGQVGRCVAGATGDYRWTLSPQATTLTLEAIDDECPDRAAALAG
TWTHTDCPTGGDDCLGFLEAGTYASVNFDPFDSDDYGQVIYTVPDGWTST
LDDKDRLTLLPPDGDETGIHGVYLFADAAATTTDCP
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mRNA from alignment at P-wetherbeei_contig20279:65..772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20279.1.1 ID=mRNA_P-wetherbeei_contig20279.1.1|Name=mRNA_P-wetherbeei_contig20279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig20279:65..772- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCGGCTGCCGCACTCGTCTTGGTCGTCGGGCTGACGACCATTGCTCG
TCGTGACACTCCGCCTTCTGCGACGACTCCGCCCTCTACCTCGGTCGCGC
CGAACCCAACGGTCGCCCCGACCGGGCTGCCCGCTGAACTGCTCGACCGC
TGGGTCGGGGCCACGCCGCCTTCAGTGAACACCCCGACCCCCGCCGCGCC
GGCGTTCGTCGTGTTCGCTGCGGATCGGGTCACCCTGGAGCATTCGTCGG
GCGGCATCGTCAACGACTTCACCTCCGATGTCACGGTCGCGAAGCCTGGC
GAGCTGGAGTTGAGGCTGACCGGCCAGGTAGGGCGGTGCGTCGCTGGCGC
AACCGGGGACTACCGCTGGACCCTCTCCCCGCAGGCGACGACCTTGACGC
TCGAGGCGATCGACGACGAGTGTCCAGACCGGGCGGCTGCCCTTGCCGGA
ACGTGGACGCACACCGACTGCCCAACGGGGGGTGACGACTGTCTCGGATT
CCTCGAGGCCGGGACCTACGCGTCGGTGAACTTCGATCCCTTCGACAGCG
ACGACTACGGCCAAGTGATCTACACCGTCCCTGATGGTTGGACATCCACG
CTCGACGACAAGGACAGGCTCACGTTGCTGCCGCCCGATGGAGACGAGAC
GGGCATCCATGGGGTGTACCTGTTCGCTGATGCGGCTGCCACCACGACGG
ACTGCCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20279:65..772-

>mRNA_P-wetherbeei_contig20279.1.1 ID=mRNA_P-wetherbeei_contig20279.1.1|Name=mRNA_P-wetherbeei_contig20279.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig20279:65..772- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCGGCTGCCGCACTCGTCTTGGTCGTCGGGCTGACGACCATTGCTCG
TCGTGACACTCCGCCTTCTGCGACGACTCCGCCCTCTACCTCGGTCGCGC
CGAACCCAACGGTCGCCCCGACCGGGCTGCCCGCTGAACTGCTCGACCGC
TGGGTCGGGGCCACGCCGCCTTCAGTGAACACCCCGACCCCCGCCGCGCC
GGCGTTCGTCGTGTTCGCTGCGGATCGGGTCACCCTGGAGCATTCGTCGG
GCGGCATCGTCAACGACTTCACCTCCGATGTCACGGTCGCGAAGCCTGGC
GAGCTGGAGTTGAGGCTGACCGGCCAGGTAGGGCGGTGCGTCGCTGGCGC
AACCGGGGACTACCGCTGGACCCTCTCCCCGCAGGCGACGACCTTGACGC
TCGAGGCGATCGACGACGAGTGTCCAGACCGGGCGGCTGCCCTTGCCGGA
ACGTGGACGCACACCGACTGCCCAACGGGGGGTGACGACTGTCTCGGATT
CCTCGAGGCCGGGACCTACGCGTCGGTGAACTTCGATCCCTTCGACAGCG
ACGACTACGGCCAAGTGATCTACACCGTCCCTGATGGTTGGACATCCACG
CTCGACGACAAGGACAGGCTCACGTTGCTGCCGCCCGATGGAGACGAGAC
GGGCATCCATGGGGTGTACCTGTTCGCTGATGCGGCTGCCACCACGACGG
ACTGCCCA
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