mRNA_P-wetherbeei_contig20258.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20258.2.1
Unique NamemRNA_P-wetherbeei_contig20258.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A7C0UUH5_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C0UUH5_9PROT)

HSP 1 Score: 131 bits (329), Expect = 1.610e-35
Identity = 69/173 (39.88%), Postives = 110/173 (63.58%), Query Frame = 1
Query:    4 MRKSFVYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEK-LDLLFQCKPTNSRKTAQHLVPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVR 519
            M+K  V ++L  D+ G+V++VTDVL R GANLE+SRMA LG EF+ ++L +V E K  +L   M A  E+ L ++ +    +  K     VP +++V G D+EGIV+ +  +L  QG ++E L + V NAP +G+PLF MR  V+ P  +S   LR+++  +A++  VDI+++
Sbjct:    1 MKKEMVITILSEDKPGIVERVTDVLLRYGANLEESRMARLGGEFAGIMLITVDESKMDDLTRAMDALKEQSLSVIAKATDPSVAKRYAGYVPYEIKVSGADHEGIVHGIAEYLAAQGANIEELSTDVTNAPITGIPLFSMRAVVEVPPKISTTELREKLAYIAEEQGVDIEIK 173          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A7W1BFJ4_9BACT (Transcriptional regulator n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7W1BFJ4_9BACT)

HSP 1 Score: 125 bits (313), Expect = 3.830e-33
Identity = 72/173 (41.62%), Postives = 109/173 (63.01%), Query Frame = 1
Query:    4 MRKSFVYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCKPTNSRKTA-QHLVPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVR 519
            M    V +  G DR G+V +VT+VL  +GAN+E++RMA LG EF+ ++L +V + +   L A + A+ E+ DL    +PT       Q  VP +V + G D++GI++ V   L  QGI++E+LD++V NAP +GV LF M   VQAP  VS   LR +++ +AD+L VDI+V+
Sbjct:    1 MSTHLVVTAAGRDRPGIVQRVTEVLVAHGANVEEARMARLGGEFAAILLVAVPQPRVTGLNAGL-ASLERDDLHVLTRPTTKAADLFQGYVPFEVHLSGADHQGILHRVSDFLAGQGINIESLDTEVTNAPVTGVALFSMHALVQAPPDVSFGELRTRLREIADRLGVDIEVK 172          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A4U1H8K9_9DELT (Transcriptional regulator n=2 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1H8K9_9DELT)

HSP 1 Score: 117 bits (292), Expect = 7.470e-30
Identity = 66/172 (38.37%), Postives = 103/172 (59.88%), Query Frame = 1
Query:   19 VYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCK----PTNSRKTAQHLVPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVRA 522
            V S LG DR GLV +VTD +  +  N+EDSRMA+LG EF +++L +   ++ A +E ++ + SEK  L  + +    P   R+ A   +P  V  + +D+EGIV  V R L   G+++ +L++    AP +G PLF M  RV  P  VS+  +RK M  VA++ N+DI+V++
Sbjct:   12 VLSCLGPDRPGLVAEVTDYVSGHSGNVEDSRMAVLGAEFGILLLVAGTPDEIAAIERDLPSLSEKTGLDIRARRTKAPEEHRRAAT--IPCIVTAEALDHEGIVRSVTRALAGAGVNIVSLEATAYEAPVTGSPLFRMEARVDLPPGVSVGKVRKAMDAVAEEQNLDIEVKS 181          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A4P2QCS3_SORCE (Glycine cleavage system protein R n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2QCS3_SORCE)

HSP 1 Score: 117 bits (292), Expect = 7.890e-30
Identity = 70/170 (41.18%), Postives = 97/170 (57.06%), Query Frame = 1
Query:   19 VYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCKPTNSRKTAQHL--VPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVRA 522
            V S LG DR GLV +VT  L   GAN+EDSRMA+LG EF +++L S        +E E  A +    L  Q + T S +  +    +P  + V  +D+EGIV  V R L   G+++ +L++    AP +G  LF M  RV  P+ V+LA LRK M  VA+  N+DIDVR+
Sbjct:   14 VLSCLGPDRPGLVAEVTHFLTERGANVEDSRMAVLGGEFGILVLASGPPGAIEAIEREAGALTTTTGLTVQSRRTKSPEAHRRAATIPCLISVDALDHEGIVRAVSRALHGAGVNIVSLETSAYEAPVTGSQLFRMEARVDVPSGVTLAQLRKAMDAVAESENLDIDVRS 183          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A2L0FB27_SORCE (Glycine cleavage system protein R n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A2L0FB27_SORCE)

HSP 1 Score: 116 bits (290), Expect = 1.620e-29
Identity = 69/170 (40.59%), Postives = 99/170 (58.24%), Query Frame = 1
Query:   19 VYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCKPTNSRKTAQHL--VPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVRA 522
            V S LG DR GLV +VT  L  +GAN+EDSRMA+LG EF +++L S      A +E +  + +    L  Q + T S ++ +    +P  + V  +D+EGIV  V R L   G+++ +L++    AP +G  LF M  RV  P  V+LA LRK M  VAD  N+DI+VR+
Sbjct:   15 VLSCLGPDRPGLVAEVTHYLTEHGANVEDSRMAVLGGEFGILLLASGPPGAIAAIERDAGSLTAATGLTVQSRRTKSPESHRRAATIPCVISVDALDHEGIVRAVSRALHGAGVNIVSLETSAYEAPVTGSQLFRMEARVDVPAGVTLAQLRKAMDAVADAENLDIEVRS 184          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A6M8WE39_9PROT (Glycine cleavage system protein R n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8WE39_9PROT)

HSP 1 Score: 115 bits (288), Expect = 2.330e-29
Identity = 59/168 (35.12%), Postives = 99/168 (58.93%), Query Frame = 1
Query:    4 MRKSFVYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCKPTNSRKTAQHLVPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVD 507
            M    V S LG DR+G+VD++  V+   G N+EDSRMA+LG EF++M+L S      A +E  +     +L L    K T  R++ +HL+P  V+V  +D+ GIV ++      + I++E++ +    A ++G P+F +R+ V  P ++ +A+LR +  +  D+LNVD
Sbjct:    1 MLNYLVISALGEDRSGIVDRLAKVVLDGGCNIEDSRMAVLGGEFAVMLLISGQWNNIAKVENSLERVGSELGLTVSAKRTEGRRSRRHLMPYAVDVVSLDHPGIVYNLAHFFSSRDINIEDMTTSSYAAAHTGAPMFSVRLIVDIPAALQIAALRDEFLDFCDELNVD 168          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A9G5H2_SORC5 (Putative Glycine cleavage system regulatory protein n=11 Tax=Sorangium cellulosum TaxID=56 RepID=A9G5H2_SORC5)

HSP 1 Score: 114 bits (285), Expect = 9.090e-29
Identity = 67/170 (39.41%), Postives = 97/170 (57.06%), Query Frame = 1
Query:   19 VYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCKPTNSRKTAQHL--VPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVRA 522
            V S LG DRTG+V +VT  L   GAN+EDSRMA+LG EF +++L S        +E E  + +    L  Q + T S ++ +    +P  + V  +D+EGIV  V R L   G+++ +L++    AP +G  LF M  RV  P  V++  LRK M  VA+  N+DIDVR+
Sbjct:   15 VLSCLGPDRTGIVAEVTHYLTERGANVEDSRMAVLGGEFGILLLASGPPGAIEAVERETESLTRATGLTVQSRRTKSPESHRRAATIPCVISVDALDHEGIVRAVSRALHGVGVNIVSLETSAYEAPVTGSQLFRMEARVDVPAGVTVTQLRKAMDAVAETENLDIDVRS 184          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A432ML92_9BACT (Transcriptional regulator n=1 Tax=Tautonia sociabilis TaxID=2080755 RepID=A0A432ML92_9BACT)

HSP 1 Score: 114 bits (284), Expect = 9.830e-29
Identity = 65/174 (37.36%), Postives = 107/174 (61.49%), Query Frame = 1
Query:    4 MRKSFVYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEA---EMRAASEKLDLLFQCKPTNSRKTAQHLVPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDV 516
            M K FV +L G DR GLV+++T +L   G N+E SRMA LG EF++++L SV EE+SA L+    E+     ++ L    +P    +     +P ++EV+G D+EGI++ V RHL +QGIS+E ++++  +AP+ G PLF M  RV  P  ++    ++ +  +  ++N++I V
Sbjct:    1 MPKDFVLTLTGPDRIGLVEELTRLLFELGGNVEASRMARLGGEFAVLMLVSVPEEQSAGLDHRLDELFLEGYRITLSATQRPFPGERP--DWLPFRIEVEGADDEGIIHRVARHLSQQGISIEEMETETTSAPFGGAPLFNMVARVVVPPELADRPWQEGLAAIGREMNLEIRV 172          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A1Y1RUW7_9SPIO (ACT domain-containing protein n=1 Tax=Marispirochaeta aestuarii TaxID=1963862 RepID=A0A1Y1RUW7_9SPIO)

HSP 1 Score: 113 bits (283), Expect = 1.320e-28
Identity = 57/171 (33.33%), Postives = 102/171 (59.65%), Query Frame = 1
Query:   16 FVYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCKPTNSRKTAQHLVPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVRAKN 528
            FV++ +G+DR G+VD++  VL     N+E+SRMA+LG EFS+M+L S  +     LE ++    +KL L  Q +PT + + +    P  +E   +D  GI++ V   L   G+++E + ++  +AP++G  +F+MR  +  P  V +A LR Q++N+  + ++DI ++  N
Sbjct:    5 FVFTAIGTDRVGIVDEIAAVLEAENCNIEESRMAVLGTEFSVMLLASGGQGIVQILEKDLPDIGDKLGLHVQIRPTRAPRGSSEGRPYSIEAISLDAPGIMHAVTAVLKRAGVNIEEISTETTSAPWTGATMFQMRGTLIVPREVHIAELRDQLENLEHERDIDIVLKPLN 175          
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Match: A0A1G3QFF2_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium RBG_13_51_14 TaxID=1802193 RepID=A0A1G3QFF2_9SPIR)

HSP 1 Score: 113 bits (282), Expect = 2.020e-28
Identity = 60/171 (35.09%), Postives = 107/171 (62.57%), Query Frame = 1
Query:   19 VYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILCSVAEEKSANLEAEMRAASEKLDLLFQCKPT---NSRKTAQHLVPLQVEVKGMDNEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVSLASLRKQMQNVADQLNVDIDVRA 522
            V + +G DR GLVD+++  L     N+EDSRMA+LG EF++++L S   + S  L  E+ A  +   L    KPT   + RK  Q L P ++    MD+ GIV++V R L ++ I++E++++ + +AP SG P+F+M+  +  P    L+++RK+++ + D++++DI++ A
Sbjct:    6 VLTAIGPDRPGLVDEISAFLADRNINIEDSRMAVLGGEFAVILLASGEPDFSDRLIRELAAIEKITGLAVHLKPTLAPHERKVHQSL-PHRLTATSMDHPGIVHEVTRVLHKRNINIESMETHLAHAPVSGAPIFKMKCVINIPVEEKLSAVRKELEKLGDRMDIDIEIEA 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20258.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C0UUH5_9PROT1.610e-3539.88Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7W1BFJ4_9BACT3.830e-3341.62Transcriptional regulator n=1 Tax=Gemmatimonadales... [more]
A0A4U1H8K9_9DELT7.470e-3038.37Transcriptional regulator n=2 Tax=Polyangium aurul... [more]
A0A4P2QCS3_SORCE7.890e-3041.18Glycine cleavage system protein R n=2 Tax=Sorangiu... [more]
A0A2L0FB27_SORCE1.620e-2940.59Glycine cleavage system protein R n=2 Tax=Sorangiu... [more]
A0A6M8WE39_9PROT2.330e-2935.12Glycine cleavage system protein R n=1 Tax=Proteoba... [more]
A9G5H2_SORC59.090e-2939.41Putative Glycine cleavage system regulatory protei... [more]
A0A432ML92_9BACT9.830e-2937.36Transcriptional regulator n=1 Tax=Tautonia sociabi... [more]
A0A1Y1RUW7_9SPIO1.320e-2833.33ACT domain-containing protein n=1 Tax=Marispirocha... [more]
A0A1G3QFF2_9SPIR2.020e-2835.09Uncharacterized protein n=1 Tax=Spirochaetes bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20258contigP-wetherbeei_contig20258:315..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1254432.SCE1572_50675
PFAMsACT_6
Model size531
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03567
KEGG Pathwayko02026,map02026
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.12e-30
EggNOG OGsCOG2716@1|root,COG2716@2|Bacteria,1R7W7@1224|Proteobacteria,43751@68525|delta/epsilon subdivisions,2X9RS@28221|Deltaproteobacteria,2Z1J3@29|Myxococcales
DescriptionACT domain
Cds size528
COG categoryE
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.8210952-CDS-P-wetherbeei_contig20258:314..8421683186194.8210952-CDS-P-wetherbeei_contig20258:314..842Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20258 315..842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.831602-UTR-P-wetherbeei_contig20258:842..8451683186194.831602-UTR-P-wetherbeei_contig20258:842..845Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20258 843..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20258.2.1prot_P-wetherbeei_contig20258.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20258 315..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20258.2.1

>prot_P-wetherbeei_contig20258.2.1 ID=prot_P-wetherbeei_contig20258.2.1|Name=mRNA_P-wetherbeei_contig20258.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
MRKSFVYSLLGSDRTGLVDQVTDVLRRNGANLEDSRMAILGEEFSMMILC
SVAEEKSANLEAEMRAASEKLDLLFQCKPTNSRKTAQHLVPLQVEVKGMD
NEGIVNDVVRHLLEQGISVENLDSQVVNAPYSGVPLFEMRIRVQAPTSVS
LASLRKQMQNVADQLNVDIDVRAKN*
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mRNA from alignment at P-wetherbeei_contig20258:315..845-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20258.2.1 ID=mRNA_P-wetherbeei_contig20258.2.1|Name=mRNA_P-wetherbeei_contig20258.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig20258:315..845- (Phaeothamnion wetherbeei SAG_119_79)
TCGATGCGTAAATCATTCGTTTACTCGCTGCTCGGCAGCGATCGCACAGG GCTCGTAGATCAGGTAACCGACGTGCTCCGACGCAACGGGGCCAATCTCG AGGACTCGCGTATGGCGATCCTGGGCGAGGAATTCTCGATGATGATCCTC TGCTCGGTGGCCGAGGAGAAATCAGCGAACCTGGAGGCCGAAATGCGCGC CGCCAGCGAGAAGCTCGATCTCTTGTTCCAGTGTAAACCGACCAATTCGC GCAAGACCGCACAGCATCTGGTCCCCCTTCAGGTCGAAGTCAAAGGGATG GATAACGAGGGCATCGTCAACGACGTCGTCCGTCACCTCCTCGAGCAGGG GATTTCCGTCGAGAACCTAGACTCCCAGGTGGTCAACGCCCCTTACAGCG GCGTTCCGCTTTTTGAGATGCGCATCCGCGTCCAAGCCCCCACTTCCGTT TCCTTAGCGTCTCTGCGCAAACAGATGCAGAACGTCGCCGATCAACTCAA CGTGGACATCGACGTCCGCGCCAAAAATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20258:315..845-

>mRNA_P-wetherbeei_contig20258.2.1 ID=mRNA_P-wetherbeei_contig20258.2.1|Name=mRNA_P-wetherbeei_contig20258.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig20258:315..845- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTAAATCATTCGTTTACTCGCTGCTCGGCAGCGATCGCACAGGGCT
CGTAGATCAGGTAACCGACGTGCTCCGACGCAACGGGGCCAATCTCGAGG
ACTCGCGTATGGCGATCCTGGGCGAGGAATTCTCGATGATGATCCTCTGC
TCGGTGGCCGAGGAGAAATCAGCGAACCTGGAGGCCGAAATGCGCGCCGC
CAGCGAGAAGCTCGATCTCTTGTTCCAGTGTAAACCGACCAATTCGCGCA
AGACCGCACAGCATCTGGTCCCCCTTCAGGTCGAAGTCAAAGGGATGGAT
AACGAGGGCATCGTCAACGACGTCGTCCGTCACCTCCTCGAGCAGGGGAT
TTCCGTCGAGAACCTAGACTCCCAGGTGGTCAACGCCCCTTACAGCGGCG
TTCCGCTTTTTGAGATGCGCATCCGCGTCCAAGCCCCCACTTCCGTTTCC
TTAGCGTCTCTGCGCAAACAGATGCAGAACGTCGCCGATCAACTCAACGT
GGACATCGACGTCCGCGCCAAAAATTAG
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