mRNA_P-wetherbeei_contig20252.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20252.1.1
Unique NamemRNA_P-wetherbeei_contig20252.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20252.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20252contigP-wetherbeei_contig20252:91..1073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size799
Hectar predicted targeting categoryother localisation
Exons2
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.6932516-CDS-P-wetherbeei_contig20252:90..7841683186194.6932516-CDS-P-wetherbeei_contig20252:90..784Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20252 91..784 -
1683186194.7081234-CDS-P-wetherbeei_contig20252:968..10451683186194.7081234-CDS-P-wetherbeei_contig20252:968..1045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20252 969..1045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.71974-UTR-P-wetherbeei_contig20252:1045..10731683186194.71974-UTR-P-wetherbeei_contig20252:1045..1073Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20252 1046..1073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20252.1.1prot_P-wetherbeei_contig20252.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20252 91..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20252.1.1

>prot_P-wetherbeei_contig20252.1.1 ID=prot_P-wetherbeei_contig20252.1.1|Name=mRNA_P-wetherbeei_contig20252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MRLTTYLRASLGEHALEGEGISAAQRWLRSQESSARGGGASTGAGNAQLL
PTEWGSDLLWTDILFSSATLPSGSSDSSGDDDKSDLDDEGAPFASLSPPP
PSAVSRSDRPAGGAVGSTVSADAVTSAEPLRPDADADAATWLLRQCVLLA
AQPGAHMPAAALARSVLGIVKGGGGAEAELQGHLFDLLGEAGVDLMGAIL
QRRAQLAAVSSDRLEALALAGQEAANGYSGFGGGSGGGGFDGGGSGGFAG
GDGGGGG
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mRNA from alignment at P-wetherbeei_contig20252:91..1073-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20252.1.1 ID=mRNA_P-wetherbeei_contig20252.1.1|Name=mRNA_P-wetherbeei_contig20252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=983bp|location=Sequence derived from alignment at P-wetherbeei_contig20252:91..1073- (Phaeothamnion wetherbeei SAG_119_79)
GCCCAGAAAAAGGCGACAAGTGAAAACGATGCGGCTGACCACGTACCTGC
GAGCCAGTCTTGGTGAACACGCACTGGAAGGCGAAGGAATTAGCGCAGCG
CAACGGTGAGCTCTATCCTCTTTGTTTGGCTACTTTTTCAGGACCAGGCT
TCGCGCATCCTATTTTGCATGTAAATCGCATCATCCTGAATGTGCCTGAA
CCCTGTTCGACTTTAGCAGTAGTGTTTCTCGCAGACGAGTCCATATTTCT
GACAGAAAGCTCTCGCTTTTCCATCGACTTTCTTTGCAGATGGCTGCGCA
GCCAAGAAAGCTCGGCTCGGGGCGGCGGAGCCAGCACCGGCGCTGGGAAC
GCTCAGCTACTGCCGACGGAGTGGGGTTCCGACCTGCTATGGACGGACAT
TTTGTTTTCCTCCGCGACCCTCCCTTCCGGGAGCAGTGACAGCAGCGGCG
ACGATGACAAGAGCGACCTTGACGACGAAGGTGCCCCTTTTGCTTCACTT
TCTCCTCCTCCACCTTCTGCTGTCTCTCGCTCCGACCGCCCCGCCGGCGG
TGCAGTCGGCAGCACAGTGTCCGCCGATGCTGTGACATCGGCCGAGCCGT
TGCGCCCTGACGCCGACGCCGACGCCGCGACCTGGCTCCTGCGGCAGTGC
GTGCTGCTGGCCGCCCAACCGGGTGCCCATATGCCAGCGGCGGCGCTGGC
CCGCTCCGTCCTGGGCATCGTCAAGGGCGGCGGTGGTGCCGAAGCGGAGC
TGCAAGGGCATCTTTTCGACCTCCTGGGCGAAGCGGGGGTCGACCTGATG
GGCGCGATCCTGCAGCGGCGGGCGCAGCTGGCGGCTGTCAGCTCCGACCG
TCTCGAGGCGCTCGCCCTCGCCGGCCAAGAGGCCGCGAATGGTTACAGCG
GCTTCGGGGGCGGCAGCGGCGGCGGCGGCTTTGATGGCGGTGGCAGCGGC
GGGTTCGCTGGCGGAGACGGAGGAGGAGGAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20252:91..1073-

>mRNA_P-wetherbeei_contig20252.1.1 ID=mRNA_P-wetherbeei_contig20252.1.1|Name=mRNA_P-wetherbeei_contig20252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig20252:91..1073- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCTGACCACGTACCTGCGAGCCAGTCTTGGTGAACACGCACTGGA
AGGCGAAGGAATTAGCGCAGCGCAACGATGGCTGCGCAGCCAAGAAAGCT
CGGCTCGGGGCGGCGGAGCCAGCACCGGCGCTGGGAACGCTCAGCTACTG
CCGACGGAGTGGGGTTCCGACCTGCTATGGACGGACATTTTGTTTTCCTC
CGCGACCCTCCCTTCCGGGAGCAGTGACAGCAGCGGCGACGATGACAAGA
GCGACCTTGACGACGAAGGTGCCCCTTTTGCTTCACTTTCTCCTCCTCCA
CCTTCTGCTGTCTCTCGCTCCGACCGCCCCGCCGGCGGTGCAGTCGGCAG
CACAGTGTCCGCCGATGCTGTGACATCGGCCGAGCCGTTGCGCCCTGACG
CCGACGCCGACGCCGCGACCTGGCTCCTGCGGCAGTGCGTGCTGCTGGCC
GCCCAACCGGGTGCCCATATGCCAGCGGCGGCGCTGGCCCGCTCCGTCCT
GGGCATCGTCAAGGGCGGCGGTGGTGCCGAAGCGGAGCTGCAAGGGCATC
TTTTCGACCTCCTGGGCGAAGCGGGGGTCGACCTGATGGGCGCGATCCTG
CAGCGGCGGGCGCAGCTGGCGGCTGTCAGCTCCGACCGTCTCGAGGCGCT
CGCCCTCGCCGGCCAAGAGGCCGCGAATGGTTACAGCGGCTTCGGGGGCG
GCAGCGGCGGCGGCGGCTTTGATGGCGGTGGCAGCGGCGGGTTCGCTGGC
GGAGACGGAGGAGGAGGAGGA
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