mRNA_P-wetherbeei_contig20232.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20232.1.1
Unique NamemRNA_P-wetherbeei_contig20232.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20232.1.1 vs. uniprot
Match: A0A7X9AEQ0_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AEQ0_9BURK)

HSP 1 Score: 205 bits (522), Expect = 4.880e-60
Identity = 126/324 (38.89%), Postives = 175/324 (54.01%), Query Frame = 1 
Query:   10 KSRGEQSVILIPTDANRDLGLFLVFLGFVGTVPVQYFLDWRGLTGPTPFY----AALGGIIAVVLGFFFIGFPRKSYVIRGNELAMTDGFLHRTLRYKWEGTPLIRLRSQEEEKGNKDVEYWIVNLVDGKRSYVLDRRMGHQMESRALAEALAKTINCPL-VERQDKGEISIPREDLDLPFKERVRRNPNLLGPALPKPEASTAHEVEKDGQLSISWCLAGSAMLNEFLAIAFLLALLALVPIFPAHTGEALQRSFVDLAREEHKFAYFIVAGTVLVGGAFILLGYRKELRATPEALIARDRLWGVPIWGAKIPAAQLEEIWVR 966
            K R +  V  +P++ANRDLG+FLVF G VG VP+ Y   +R L   TP +     A  G+  V+ G   + + R+++ +R   + + DG    ++RY +   P+IRL+    E   + VE+W V LVDGK  ++LD R     ESR LAE LAK I CPL V+R+    + I   DLDLP  ERV R P+LLGP +P+PE     E       + SW    S++L E     F LA LA   + P    +  Q S +DLAR +  + YF V         F L GYR ++  TP+ + AR  LWG+P+W   +P  +LEEI VR
Sbjct:    5 KCRCDCDVFALPSNANRDLGIFLVFTGVVGGVPLYYL--YRMLVLHTPVWDWRHGATFGLFLVLAGLALLVWTRRTFRVREGFVEIRDGLFRLSVRYPYHDEPMIRLQPLAAEVRGRQVEFWQVMLVDGKYEFLLDSRPDRMQESRCLAEFLAKGIGCPLRVQREAGVHLDIEAADLDLPLGERVHRYPSLLGPRIPRPEVFPIREEGTGSTRTFSWGGRTSSLLPEL--SGFFLAALAF-SVIPISEAQGRQYSLLDLARLQGDYRYFQVLLGFFTLALFFLFGYRVKVALTPKQIQARTSLWGLPLWSRVLPLNKLEEILVR 323
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X9AEQ0_9BURK4.880e-6038.89Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20232contigP-wetherbeei_contig20232:2..973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size972
Hectar predicted targeting categorysignal anchor
Exons1
Cds size972
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186194.0918717-CDS-P-wetherbeei_contig20232:1..9731683186194.0918717-CDS-P-wetherbeei_contig20232:1..973Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20232 2..973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20232.1.1prot_P-wetherbeei_contig20232.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20232 2..973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20232.1.1

>prot_P-wetherbeei_contig20232.1.1 ID=prot_P-wetherbeei_contig20232.1.1|Name=mRNA_P-wetherbeei_contig20232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=324bp
VVKKSRGEQSVILIPTDANRDLGLFLVFLGFVGTVPVQYFLDWRGLTGPT
PFYAALGGIIAVVLGFFFIGFPRKSYVIRGNELAMTDGFLHRTLRYKWEG
TPLIRLRSQEEEKGNKDVEYWIVNLVDGKRSYVLDRRMGHQMESRALAEA
LAKTINCPLVERQDKGEISIPREDLDLPFKERVRRNPNLLGPALPKPEAS
TAHEVEKDGQLSISWCLAGSAMLNEFLAIAFLLALLALVPIFPAHTGEAL
QRSFVDLAREEHKFAYFIVAGTVLVGGAFILLGYRKELRATPEALIARDR
LWGVPIWGAKIPAAQLEEIWVRQS
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mRNA from alignment at P-wetherbeei_contig20232:2..973-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20232.1.1 ID=mRNA_P-wetherbeei_contig20232.1.1|Name=mRNA_P-wetherbeei_contig20232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig20232:2..973- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCAAGAAAAGCCGCGGCGAACAGTCGGTCATTCTCATTCCTACGGA
TGCGAATCGCGACCTGGGCCTTTTTTTGGTCTTCCTGGGCTTTGTGGGCA
CGGTTCCCGTGCAGTATTTTCTGGATTGGCGCGGCCTGACCGGCCCAACC
CCCTTCTATGCGGCGCTGGGCGGCATTATCGCGGTCGTGCTGGGCTTCTT
TTTCATCGGTTTTCCCCGTAAGAGCTACGTCATTCGAGGGAACGAGTTGG
CGATGACGGACGGCTTCCTGCACCGCACCCTGCGCTACAAGTGGGAAGGC
ACGCCCTTGATCCGTTTGCGCAGCCAGGAAGAGGAGAAGGGCAACAAAGA
CGTCGAGTACTGGATCGTCAATCTCGTCGACGGCAAGCGCAGCTATGTGC
TGGACCGACGGATGGGCCATCAAATGGAGAGCCGCGCTCTGGCCGAGGCC
CTCGCTAAGACCATCAACTGCCCACTGGTGGAACGCCAGGACAAGGGCGA
GATTTCGATTCCCCGTGAGGATCTCGATCTGCCGTTCAAGGAGCGGGTTC
GGCGCAATCCCAACCTGCTCGGTCCCGCGCTTCCCAAACCCGAGGCCTCG
ACGGCTCACGAAGTCGAAAAGGACGGTCAGCTGAGCATCTCCTGGTGTCT
GGCCGGGTCGGCGATGCTCAATGAGTTTCTGGCGATCGCGTTCCTCCTGG
CCTTGCTGGCGCTCGTCCCCATCTTTCCCGCGCATACAGGAGAAGCACTG
CAGCGCTCCTTTGTCGACTTGGCCCGTGAGGAGCACAAATTCGCCTACTT
CATCGTGGCGGGGACCGTTCTGGTGGGTGGAGCCTTTATTCTGTTGGGTT
ACCGCAAGGAGCTGCGGGCGACTCCAGAAGCCCTGATCGCTCGCGACCGG
CTCTGGGGAGTGCCCATCTGGGGCGCTAAAATCCCCGCGGCTCAGCTCGA
AGAGATCTGGGTTCGCCAGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20232:2..973-

>mRNA_P-wetherbeei_contig20232.1.1 ID=mRNA_P-wetherbeei_contig20232.1.1|Name=mRNA_P-wetherbeei_contig20232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig20232:2..973- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCAAGAAAAGCCGCGGCGAACAGTCGGTCATTCTCATTCCTACGGA
TGCGAATCGCGACCTGGGCCTTTTTTTGGTCTTCCTGGGCTTTGTGGGCA
CGGTTCCCGTGCAGTATTTTCTGGATTGGCGCGGCCTGACCGGCCCAACC
CCCTTCTATGCGGCGCTGGGCGGCATTATCGCGGTCGTGCTGGGCTTCTT
TTTCATCGGTTTTCCCCGTAAGAGCTACGTCATTCGAGGGAACGAGTTGG
CGATGACGGACGGCTTCCTGCACCGCACCCTGCGCTACAAGTGGGAAGGC
ACGCCCTTGATCCGTTTGCGCAGCCAGGAAGAGGAGAAGGGCAACAAAGA
CGTCGAGTACTGGATCGTCAATCTCGTCGACGGCAAGCGCAGCTATGTGC
TGGACCGACGGATGGGCCATCAAATGGAGAGCCGCGCTCTGGCCGAGGCC
CTCGCTAAGACCATCAACTGCCCACTGGTGGAACGCCAGGACAAGGGCGA
GATTTCGATTCCCCGTGAGGATCTCGATCTGCCGTTCAAGGAGCGGGTTC
GGCGCAATCCCAACCTGCTCGGTCCCGCGCTTCCCAAACCCGAGGCCTCG
ACGGCTCACGAAGTCGAAAAGGACGGTCAGCTGAGCATCTCCTGGTGTCT
GGCCGGGTCGGCGATGCTCAATGAGTTTCTGGCGATCGCGTTCCTCCTGG
CCTTGCTGGCGCTCGTCCCCATCTTTCCCGCGCATACAGGAGAAGCACTG
CAGCGCTCCTTTGTCGACTTGGCCCGTGAGGAGCACAAATTCGCCTACTT
CATCGTGGCGGGGACCGTTCTGGTGGGTGGAGCCTTTATTCTGTTGGGTT
ACCGCAAGGAGCTGCGGGCGACTCCAGAAGCCCTGATCGCTCGCGACCGG
CTCTGGGGAGTGCCCATCTGGGGCGCTAAAATCCCCGCGGCTCAGCTCGA
AGAGATCTGGGTTCGCCAGTCC
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