mRNA_P-wetherbeei_contig20217.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A835YSJ0_9STRA (50S ribosomal protein L28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ0_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 5.290e-20 Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 25 ALYQAAAFVLPASAFNGAALASQVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
AL A+A A+ F GA LAS AA S+S L MRTR CDLTGK ANRKARVVTFSHTRNHKVQEVNL KRIF
Sbjct: 10 ALLVASAAAFSATTFAGAKLASHKSAAASSS-GLVMRTRNCDLTGKSANRKARVVTFSHTRNHKVQEVNLHTKRIF 84
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A835Z921_9STRA (50S ribosomal protein L28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z921_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.250e-18 Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 1
Query: 67 FNGAALASQVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
F G LAS +A AS AL MRTR CDLTGK ANRKARVVTFSHTRNHKVQEVNL KR+F
Sbjct: 26 FTGTHLASHTASA--ASSALVMRTRSCDLTGKSANRKARVVTFSHTRNHKVQEVNLHTKRMF 85
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: F0YN12_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN12_AURAN) HSP 1 Score: 78.6 bits (192), Expect = 7.390e-17 Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1
Query: 109 SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
+AS A EM+ R+CD+TGKR N KA VTFSHTRNHKVQ+VNLQ++R++W+EG
Sbjct: 32 TASAAPEMKFRVCDMTGKRRNAKAMTVTFSHTRNHKVQKVNLQDRRLWWSEG 83
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 1.860e-16 Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 37 AAAFVLPASAFNGAALASQVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEGK 267
A+ F++ SAF G+++ S+ +A S + +L+MR R CDL GK+ NRKARVVTFSH R HKVQ +NLQ ++++W EGK
Sbjct: 18 ASGFMIAPSAFAGSSVVSK-SSATSPTSSLQMRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGK 93
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S3ZMH3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMH3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.730e-15 Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 112 ASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
A+ A EM+ R+CDLTGKR N KA VTFSHTRNHKVQ+VNLQ++R++W EG
Sbjct: 130 AAAAPEMKFRVCDLTGKRRNAKAMTVTFSHTRNHKVQQVNLQDRRLWWPEG 180
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S3NJI8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI8_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.880e-14 Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 112 ASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
A ++ M+ R CDLTGKR N KA VTFSHTRNHKVQ+VNLQ ++++W EG
Sbjct: 33 APSSVSMKFRTCDLTGKRRNAKAMTVTFSHTRNHKVQKVNLQNRKLWWEEG 83
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A448ZBR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBR3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 8.350e-14 Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 109 SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
S + ++EMR R CDL GK+ANRKARVVTFSH R HKVQEVNLQ KR F
Sbjct: 36 SGAASMEMRARECDLLGKKANRKARVVTFSHKRIHKVQEVNLQTKRFF 83
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S2RVK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.400e-13 Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 109 SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIFWTEG 264
+A++ + MR R CDLTGKR NR+A VTFSH RN KVQ VNLQ+K+++W EG
Sbjct: 68 TAAREVSMRARFCDLTGKRPNRQAMAVTFSHKRNKKVQAVNLQKKKLWWPEG 119
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A7S2REE2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REE2_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 6.760e-13 Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 58 ASAFNGAALASQVGAAI----SASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKRIF 252
ASAF G L + AA S + +L MR R CDL GK+ANRKARVVTFSH R HKVQ VNLQ KR +
Sbjct: 1 ASAFTGTPLQTSRSAASRHSRSGASSLVMRERACDLLGKKANRKARVVTFSHKRIHKVQAVNLQWKRFY 69
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Match: A0A6U3T0T0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T0T0_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.010e-12 Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 64 AFNGAALAS--QVGAAISASQALEMRTRICDLTGKRANRKARVVTFSHTRNHKVQEVNLQEKR 246
AF G +L + +V + + ++ MRTR+CDL GK+ANRKARVVTFSH R HKVQEVNLQ KR
Sbjct: 70 AFTGTSLQTTPRVSRTQNGASSMMMRTRVCDLLGKKANRKARVVTFSHKRIHKVQEVNLQWKR 132 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20217.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20217.1.1 >prot_P-wetherbeei_contig20217.1.1 ID=prot_P-wetherbeei_contig20217.1.1|Name=mRNA_P-wetherbeei_contig20217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp LFVIAALAALYQAAAFVLPASAFNGAALASQVGAAISASQALEMRTRICDback to top mRNA from alignment at P-wetherbeei_contig20217:237..1232- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20217.1.1 ID=mRNA_P-wetherbeei_contig20217.1.1|Name=mRNA_P-wetherbeei_contig20217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=996bp|location=Sequence derived from alignment at P-wetherbeei_contig20217:237..1232- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20217:237..1232- >mRNA_P-wetherbeei_contig20217.1.1 ID=mRNA_P-wetherbeei_contig20217.1.1|Name=mRNA_P-wetherbeei_contig20217.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig20217:237..1232- (Phaeothamnion wetherbeei SAG_119_79)back to top |