mRNA_P-wetherbeei_contig20214.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20214.1.1
Unique NamemRNA_P-wetherbeei_contig20214.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: A0A2E8HKY1_9BACT (Carbohydrate kinase (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E8HKY1_9BACT)

HSP 1 Score: 137 bits (346), Expect = 1.490e-39
Identity = 69/114 (60.53%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLP 342
            +AFA+  Y TRFPHPGWAEQDP DWW AL   V  A+  A V   +I A+ +DTTCCSVVALD +G PL PCL+WMD+RSA   E ++    GD AL VN+ GRGPVSAEWM+P
Sbjct:   28 MAFASTAYETRFPHPGWAEQDPRDWWQALGQSVRRAVEQAGVDSRQIAAMAVDTTCCSVVALDGSGEPLRPCLIWMDLRSAPQTEKVV--ATGDVALRVNSDGRGPVSAEWMVP 139          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: A0A2V0NZK0_9CHLO (Glycerol kinase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NZK0_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 7.760e-38
Identity = 73/116 (62.93%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            +AFA++PYPT +PHP WAEQ P DWWAAL   V AA+  + VAV +I A+C+DTTCC+VVALD +GAPL P LLWMDMRSA  A  +   G  +  L VNAGG GPVSAEWM+PKA
Sbjct:   30 LAFASSPYPTSYPHPSWAEQSPDDWWAALGAAVRAAVEESGVAVGDIAAMCVDTTCCTVVALDESGAPLRPALLWMDMRSAKQAAAVADCGAPE--LRVNAGGAGPVSAEWMVPKA 143          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: A0A2P6TT72_CHLSO (Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT72_CHLSO)

HSP 1 Score: 143 bits (361), Expect = 1.780e-37
Identity = 72/116 (62.07%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            ++FA+ PYPT FP PGWAEQDPADWWA L   V  A+ +A +  T++ AIC+DTTCC+VVALDAAG  L P LLWMDMRSA  A  +   G  D AL VN+ G GPVSAEWM+PKA
Sbjct:   28 LSFASQPYPTSFPQPGWAEQDPADWWAGLGAAVREAVASAGIQTTDVAAICVDTTCCTVVALDAAGKALRPALLWMDMRSAPQAAKVAACG--DEALAVNSAGAGPVSAEWMVPKA 141          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: A8JHF0_CHLRE (Glycerol kinase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JHF0_CHLRE)

HSP 1 Score: 140 bits (354), Expect = 3.590e-37
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   13 AAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            A PY T++PHPGWAEQ P DWW A+   V  A+ AA V   ++ A+CLDTTCC+VVALDA GAPL P LLWMDMRSA+ A  +  +  GD AL VN GG GPVSAEWMLPK+
Sbjct:   31 AHPYETQYPHPGWAEQRPEDWWTAVGAAVRGAVAAAEVTPDQVAALCLDTTCCTVVALDADGAPLRPALLWMDMRSAAQARAVAGVTGGDPALVVNQGGAGPVSAEWMLPKS 142          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: D7FTM7_ECTSI (Xylulose kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM7_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.590e-36
Identity = 69/116 (59.48%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            +AF++  Y T++P PGWAEQDP  WW  L   V  A++ + V+  +I +I +DTTCCSVVALDA G PL P LLWMDMRSA CAE +   G  D AL VN+GGRGPVSAEWM+PKA
Sbjct:   28 LAFSSCAYATQYPQPGWAEQDPDAWWKGLGEAVREAVSKSAVSAADIVSIGVDTTCCSVVALDANGRPLRPSLLWMDMRSAGCAEQVAETG--DDALRVNSGGRGPVSAEWMIPKA 141          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: A0A2P6VDM7_9CHLO (Glycerol kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VDM7_9CHLO)

HSP 1 Score: 140 bits (354), Expect = 1.660e-36
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            ++FA+APYPT FP PGWAEQ PADWW AL V V  A  +A V   +I A+C+DTTCC+VVALD AG  L P LLWMDMRSA+ A  +     GD AL VN GG GPVSAEWM+PKA
Sbjct:   27 LSFASAPYPTAFPAPGWAEQRPADWWTALGVAVKEAAASAGVPPADIAALCVDTTCCTVVALDEAGQALRPALLWMDMRSAAQAARVA--AAGDEALAVNGGGGGPVSAEWMIPKA 140          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: A0A2K3D713_CHLRE (Glycerol kinase n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D713_CHLRE)

HSP 1 Score: 140 bits (354), Expect = 1.750e-36
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   13 AAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            A PY T++PHPGWAEQ P DWW A+   V  A+ AA V   ++ A+CLDTTCC+VVALDA GAPL P LLWMDMRSA+ A  +  +  GD AL VN GG GPVSAEWMLPK+
Sbjct:   31 AHPYETQYPHPGWAEQRPEDWWTAVGAAVRGAVAAAEVTPDQVAALCLDTTCCTVVALDADGAPLRPALLWMDMRSAAQARAVAGVTGGDPALVVNQGGAGPVSAEWMLPKS 142          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: C1DYC0_MICCC (Pentose-5-phosphate 3-epimerase n=2 Tax=Micromonas TaxID=38832 RepID=C1DYC0_MICCC)

HSP 1 Score: 140 bits (352), Expect = 2.980e-36
Identity = 69/116 (59.48%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            V FA  PY TR+P PGWAEQDP DWW  +   V   L  A VA  ++  IC DTTCC+VVALD AG PL+PC+LWMDMR+A   E +L    GD AL VN+ G GPVSAEWM+PKA
Sbjct:   28 VGFADTPYETRYPQPGWAEQDPNDWWVGMGSSVRKVLADAGVAAADVAGICCDTTCCTVVALDDAGDPLMPCILWMDMRAAEQTEQVL--ATGDVALRVNSDGAGPVSAEWMVPKA 141          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: A0A382K2W1_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382K2W1_9ZZZZ)

HSP 1 Score: 134 bits (337), Expect = 3.500e-36
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            +A A+ PY T FP+P WAEQDP DWW +L   V AA++ + V   +I A+ +DTTCCSVVALD AG PL PCL+WMD+RSA   E ++    GDAAL VN  G GPVSAEWM+PKA
Sbjct:    6 LASASTPYDTSFPNPAWAEQDPRDWWQSLGESVRAAVDQSGVRPEQIAAMAVDTTCCSVVALDEAGQPLRPCLIWMDVRSAPQTEKVV--AAGDAALRVNGDGHGPVSAEWMIPKA 119          
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Match: UPI00142329DD (FGGY family carbohydrate kinase n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00142329DD)

HSP 1 Score: 137 bits (345), Expect = 5.970e-36
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAICLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVNAGGRGPVSAEWMLPKA 348
            +AFAA PY T FP PGWAEQ+PADWWAA+   V  A+  A ++   + A+ +DTTCCSVVALDA G  L P L+WMD+RSA+ AE ++    GDAAL++N GG GPVSAEWM+PKA
Sbjct:   30 LAFAATPYRTAFPQPGWAEQNPADWWAAVGSSVRQAVREAGISPGAVSALAVDTTCCSVVALDAEGQALRPALIWMDVRSAAEAESVV--ASGDAALKINGGGAGPVSAEWMVPKA 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20214.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8HKY1_9BACT1.490e-3960.53Carbohydrate kinase (Fragment) n=1 Tax=Gemmatimona... [more]
A0A2V0NZK0_9CHLO7.760e-3862.93Glycerol kinase n=1 Tax=Raphidocelis subcapitata T... [more]
A0A2P6TT72_CHLSO1.780e-3762.07Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxI... [more]
A8JHF0_CHLRE3.590e-3762.50Glycerol kinase (Fragment) n=1 Tax=Chlamydomonas r... [more]
D7FTM7_ECTSI1.590e-3659.48Xylulose kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A2P6VDM7_9CHLO1.660e-3662.93Glycerol kinase n=1 Tax=Micractinium conductrix Ta... [more]
A0A2K3D713_CHLRE1.750e-3662.50Glycerol kinase n=1 Tax=Chlamydomonas reinhardtii ... [more]
C1DYC0_MICCC2.980e-3659.48Pentose-5-phosphate 3-epimerase n=2 Tax=Micromonas... [more]
A0A382K2W1_9ZZZZ3.500e-3658.62Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
UPI00142329DD5.970e-3659.48FGGY family carbohydrate kinase n=1 Tax=Pelagibius... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20214contigP-wetherbeei_contig20214:8..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3055.EDO96688
Preferred nameXK-RPE
PFAMsFGGY_C,FGGY_N,Ribul_P_3_epim
Model size349
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.89e-38
EggNOG OGsCOG0554@1|root,KOG2517@2759|Eukaryota,37NPB@33090|Viridiplantae,34H7E@3041|Chlorophyta
DescriptionFusion of two proteins both involved in carbon metabolism a sugar xylulose kinase in the first half of the CDS and ribulose-phosphate 3 epimerase in the 3'half
Cds size348
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.6821558-CDS-P-wetherbeei_contig20214:7..3551683186193.6821558-CDS-P-wetherbeei_contig20214:7..355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20214 8..355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20214.1.1prot_P-wetherbeei_contig20214.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20214 8..355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20214.1.1

>prot_P-wetherbeei_contig20214.1.1 ID=prot_P-wetherbeei_contig20214.1.1|Name=mRNA_P-wetherbeei_contig20214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
VAFAAAPYPTRFPHPGWAEQDPADWWAALAVCVPAALNAANVAVTEIRAI
CLDTTCCSVVALDAAGAPLVPCLLWMDMRSASCAEDILRLGRGDAALEVN
AGGRGPVSAEWMLPKA
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mRNA from alignment at P-wetherbeei_contig20214:8..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20214.1.1 ID=mRNA_P-wetherbeei_contig20214.1.1|Name=mRNA_P-wetherbeei_contig20214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=349bp|location=Sequence derived from alignment at P-wetherbeei_contig20214:8..356+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCTTCGCCGCCGCCCCGTACCCGACCCGCTTCCCTCATCCGGGCTG GGCCGAACAGGATCCCGCTGACTGGTGGGCCGCACTGGCCGTGTGCGTCC CGGCAGCCCTCAATGCTGCGAATGTTGCCGTCACGGAGATCCGCGCCATC TGCCTCGACACCACGTGCTGCAGCGTTGTCGCGCTCGACGCGGCGGGCGC ACCGCTGGTGCCGTGCCTGCTGTGGATGGACATGCGGTCGGCGTCCTGCG CGGAAGACATTCTGAGGCTGGGGCGGGGCGATGCGGCACTAGAGGTCAAC GCCGGCGGGCGTGGCCCTGTATCGGCCGAATGGATGCTCCCCAAGGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20214:8..356+

>mRNA_P-wetherbeei_contig20214.1.1 ID=mRNA_P-wetherbeei_contig20214.1.1|Name=mRNA_P-wetherbeei_contig20214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig20214:8..356+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCTTCGCCGCCGCCCCGTACCCGACCCGCTTCCCTCATCCGGGCTG
GGCCGAACAGGATCCCGCTGACTGGTGGGCCGCACTGGCCGTGTGCGTCC
CGGCAGCCCTCAATGCTGCGAATGTTGCCGTCACGGAGATCCGCGCCATC
TGCCTCGACACCACGTGCTGCAGCGTTGTCGCGCTCGACGCGGCGGGCGC
ACCGCTGGTGCCGTGCCTGCTGTGGATGGACATGCGGTCGGCGTCCTGCG
CGGAAGACATTCTGAGGCTGGGGCGGGGCGATGCGGCACTAGAGGTCAAC
GCCGGCGGGCGTGGCCCTGTATCGGCCGAATGGATGCTCCCCAAGGCA
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