mRNA_P-wetherbeei_contig2021.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2021.1.1
Unique NamemRNA_P-wetherbeei_contig2021.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2021contigP-wetherbeei_contig2021:38..2380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1998
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1617
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.514543-UTR-P-wetherbeei_contig2021:37..1511683186193.514543-UTR-P-wetherbeei_contig2021:37..151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2021 38..151 -
1683186193.5417159-UTR-P-wetherbeei_contig2021:2113..23801683186193.5417159-UTR-P-wetherbeei_contig2021:2113..2380Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2021 2114..2380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.5237632-CDS-P-wetherbeei_contig2021:151..10081683186193.5237632-CDS-P-wetherbeei_contig2021:151..1008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2021 152..1008 -
1683186193.5327547-CDS-P-wetherbeei_contig2021:1353..21131683186193.5327547-CDS-P-wetherbeei_contig2021:1353..2113Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2021 1354..2113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2021.1.1prot_P-wetherbeei_contig2021.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2021 152..2113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2021.1.1

>prot_P-wetherbeei_contig2021.1.1 ID=prot_P-wetherbeei_contig2021.1.1|Name=mRNA_P-wetherbeei_contig2021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=539bp
MARTALLVLTASAVFLGDASPPLSGGFKHSRTGIQSTVTWSNQTRNVDEL
TRNFLFKGGRRGEEDEISLRFTTRVDFFQNFRGKWLAFFGDSNTRFMVLS
LLQMLDIEGIRGQANLTATDPCEWWAPEQAVAFVDDCLRVGEAAYVWTHG
GDNRTFRFVREVYKNTTGMHPESIAGTVQVIQNTANTNVYPGSMAGTMEA
ARSWRRALERDPSAVLLSYVMTTETSTVESVVGRPGRGWIRDFGGSQPDA
YFFATGAWDRQVMRQYPDRLVRAPASSHPADPPEGSACGSTVPVGSSNVS
MEDVLADHRGYISRFVADADGNRRPGVPVIWGLPNFEPRDPAPVRRGCAL
FEIQRRVMAPGLAAAAGVKTPITGLMDRYGLTKQLPEERLSGPHFTHIVN
TISMQGVLQLFRAHGAAAESSAARASPAAAATAATAAAAVAQAGMISTIV
RPAVTPPLREPGSQTPAAVPLTAAGPTTTTAVTPPFTPQEAPVQHVRFAD
ECTDEPSPPGWMSGLRRVCRWELEPTAATTRPLATHHG*
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mRNA from alignment at P-wetherbeei_contig2021:38..2380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2021.1.1 ID=mRNA_P-wetherbeei_contig2021.1.1|Name=mRNA_P-wetherbeei_contig2021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2343bp|location=Sequence derived from alignment at P-wetherbeei_contig2021:38..2380- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCCGCATTGAGAGGCCTAGGACAACCGCCTCTCTCTCCTCTCCAGC
TTCCCCTAATCAGAACAACGGGGAAGTCCAGTTTGGTATTTGGCGCCGAA
GTACGGCGGAAGAAATTGCCGACGGCTAGTACAAAGGCATCGACCGACAC
GCCTGTGTTGCTGAGAGTCAAGCTGAGAGGCCAGTTTGGGCTTTTGTCGC
GAGTTTTGAGCATCCAGGACCTCTTCTTGTGCGCCACGGCTTCACGTGGG
ATAGAGGCTCTTTCGACATGGCGCGCACCGCCCTCCTTGTGCTCACTGCA
TCCGCAGTCTTCCTTGGCGACGCTTCTCCTCCCCTCTCCGGAGGATTCAA
GCACAGCAGAACCGGCATTCAGAGTACGGTCACTTGGAGCAATCAGACCC
GAAATGTTGATGAGTTGACACGAAACTTCCTCTTTAAGGGAGGGCGACGA
GGGGAAGAGGACGAGATCTCGTTGCGCTTTACGACGCGGGTCGATTTCTT
TCAGAACTTCCGCGGCAAGTGGCTCGCCTTCTTCGGGGACAGCAACACGC
GCTTCATGGTGCTTTCGCTGCTTCAAATGCTCGATATCGAGGGCATCCGT
GGACAGGCGAACCTCACAGCTACCGACCCGTGCGAGTGGTGGGCCCCAGA
GCAGGCAGTCGCATTTGTGGACGACTGTCTACGCGTCGGAGAAGCGGCAT
ACGTCTGGACACACGGCGGCGACAACCGCACCTTCCGCTTCGTCCGAGAA
GTCTACAAGAACACGACCGGCATGCACCCGGAGTCGATTGCCGGAACTGT
CCAGGTCATCCAGAACACAGCCAACACAAATGTATACCCGGGATCGATGG
CCGGGACCATGGAAGCGGCGCGCTCGTGGCGGAGGGCGCTGGAGCGAGAC
CCCTCCGCAGTTCTGCTTTCGTACGTCATGACGACGGAGACGAGCACTGT
CGAGAGCGTTGTCGGGCGCCCCGGGCGAGGTTGGATCAGGGACTTTGGCG
GCAGCCAGCCCGACGCGTACTTCTTTGGTACGTTCATGTTAGTGCGCCAG
ATTGTCCCTCCGCCACTTCTTTTCTGTTCTTCCTTTTGTCTTGATTTTGC
TAAAGCGCTTTCTTTGCGTCAGGGTGCGGGTCGGCAACCAAATGGCGCGC
GCTGCCGAGCGCATCTCGAAGGCAGCAACGCCGCACAGCTCTCTTGATTC
AAGACACGCCAGGGGTTCTGATAATCCTTCGTTTGAAGATTGCCAAACCG
TTTCTCGCCCAGGTTTGAAGGAATGCAATTTTGTTCTAACCATTTCAGCC
CCCCCTTTTCTCTCCCGCTCTTTCCCTGCCCTTTTGCACCGCCGGCCGGA
CCTTTCGGTACCTACCCTGCAGCCACGGGCGCATGGGATCGGCAGGTAAT
GCGCCAATACCCGGACCGGCTCGTCAGGGCGCCGGCGAGCAGCCATCCCG
CCGATCCCCCCGAGGGTTCTGCATGTGGCTCGACGGTTCCGGTCGGGTCC
AGCAACGTCTCCATGGAGGACGTGCTAGCGGACCACCGGGGCTACATCTC
CCGCTTTGTCGCCGACGCCGACGGAAACCGGCGGCCAGGCGTGCCCGTCA
TCTGGGGCCTGCCGAACTTCGAACCCCGCGACCCGGCACCGGTTCGGCGC
GGGTGCGCCCTCTTTGAGATTCAGCGGCGCGTGATGGCGCCGGGGCTCGC
GGCCGCCGCCGGTGTCAAAACGCCCATCACCGGGCTGATGGACCGCTACG
GGCTCACTAAGCAGCTGCCGGAGGAGCGGTTGAGCGGCCCGCACTTCACG
CACATCGTCAACACGATTTCGATGCAAGGCGTCCTGCAGCTCTTCCGTGC
CCACGGCGCTGCCGCCGAGTCTTCTGCGGCTCGCGCCTCTCCGGCGGCAG
CAGCAACCGCGGCGACGGCGGCGGCGGCGGTAGCGCAGGCGGGCATGATC
TCGACCATTGTGAGGCCCGCGGTGACGCCGCCGCTACGTGAGCCGGGCTC
GCAAACACCAGCTGCGGTGCCGCTCACCGCCGCGGGGCCGACAACGACGA
CAGCGGTTACGCCGCCTTTCACGCCGCAGGAGGCGCCCGTGCAGCACGTC
CGTTTCGCTGACGAATGCACAGATGAGCCTTCGCCGCCCGGCTGGATGAG
CGGTTTGCGTCGCGTCTGCAGATGGGAGCTTGAGCCCACGGCGGCCACGA
CGAGGCCACTTGCCACACACCACGGCTAAGCTGTCCGGTCCAGGGGCGGC
GTCGGGTGCCAGCGGCAGCGGCTACTACGGCGGTTGCTTTTGCCATGCTT
TCACCGGGTGGCCACGTCTGGTTTTTCACTTTGGTATACTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2021:38..2380-

>mRNA_P-wetherbeei_contig2021.1.1 ID=mRNA_P-wetherbeei_contig2021.1.1|Name=mRNA_P-wetherbeei_contig2021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1617bp|location=Sequence derived from alignment at P-wetherbeei_contig2021:38..2380- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCACCGCCCTCCTTGTGCTCACTGCATCCGCAGTCTTCCTTGG
CGACGCTTCTCCTCCCCTCTCCGGAGGATTCAAGCACAGCAGAACCGGCA
TTCAGAGTACGGTCACTTGGAGCAATCAGACCCGAAATGTTGATGAGTTG
ACACGAAACTTCCTCTTTAAGGGAGGGCGACGAGGGGAAGAGGACGAGAT
CTCGTTGCGCTTTACGACGCGGGTCGATTTCTTTCAGAACTTCCGCGGCA
AGTGGCTCGCCTTCTTCGGGGACAGCAACACGCGCTTCATGGTGCTTTCG
CTGCTTCAAATGCTCGATATCGAGGGCATCCGTGGACAGGCGAACCTCAC
AGCTACCGACCCGTGCGAGTGGTGGGCCCCAGAGCAGGCAGTCGCATTTG
TGGACGACTGTCTACGCGTCGGAGAAGCGGCATACGTCTGGACACACGGC
GGCGACAACCGCACCTTCCGCTTCGTCCGAGAAGTCTACAAGAACACGAC
CGGCATGCACCCGGAGTCGATTGCCGGAACTGTCCAGGTCATCCAGAACA
CAGCCAACACAAATGTATACCCGGGATCGATGGCCGGGACCATGGAAGCG
GCGCGCTCGTGGCGGAGGGCGCTGGAGCGAGACCCCTCCGCAGTTCTGCT
TTCGTACGTCATGACGACGGAGACGAGCACTGTCGAGAGCGTTGTCGGGC
GCCCCGGGCGAGGTTGGATCAGGGACTTTGGCGGCAGCCAGCCCGACGCG
TACTTCTTTGCCACGGGCGCATGGGATCGGCAGGTAATGCGCCAATACCC
GGACCGGCTCGTCAGGGCGCCGGCGAGCAGCCATCCCGCCGATCCCCCCG
AGGGTTCTGCATGTGGCTCGACGGTTCCGGTCGGGTCCAGCAACGTCTCC
ATGGAGGACGTGCTAGCGGACCACCGGGGCTACATCTCCCGCTTTGTCGC
CGACGCCGACGGAAACCGGCGGCCAGGCGTGCCCGTCATCTGGGGCCTGC
CGAACTTCGAACCCCGCGACCCGGCACCGGTTCGGCGCGGGTGCGCCCTC
TTTGAGATTCAGCGGCGCGTGATGGCGCCGGGGCTCGCGGCCGCCGCCGG
TGTCAAAACGCCCATCACCGGGCTGATGGACCGCTACGGGCTCACTAAGC
AGCTGCCGGAGGAGCGGTTGAGCGGCCCGCACTTCACGCACATCGTCAAC
ACGATTTCGATGCAAGGCGTCCTGCAGCTCTTCCGTGCCCACGGCGCTGC
CGCCGAGTCTTCTGCGGCTCGCGCCTCTCCGGCGGCAGCAGCAACCGCGG
CGACGGCGGCGGCGGCGGTAGCGCAGGCGGGCATGATCTCGACCATTGTG
AGGCCCGCGGTGACGCCGCCGCTACGTGAGCCGGGCTCGCAAACACCAGC
TGCGGTGCCGCTCACCGCCGCGGGGCCGACAACGACGACAGCGGTTACGC
CGCCTTTCACGCCGCAGGAGGCGCCCGTGCAGCACGTCCGTTTCGCTGAC
GAATGCACAGATGAGCCTTCGCCGCCCGGCTGGATGAGCGGTTTGCGTCG
CGTCTGCAGATGGGAGCTTGAGCCCACGGCGGCCACGACGAGGCCACTTG
CCACACACCACGGCTAA
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