|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1761 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 1689 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186193.3156314-CDS-P-wetherbeei_contig202:1616..2948 | 1683186193.3156314-CDS-P-wetherbeei_contig202:1616..2948 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig202 1617..2948 - |
| 1683186193.3248975-CDS-P-wetherbeei_contig202:3212..3320 | 1683186193.3248975-CDS-P-wetherbeei_contig202:3212..3320 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig202 3213..3320 - |
| 1683186193.3344243-CDS-P-wetherbeei_contig202:3576..3660 | 1683186193.3344243-CDS-P-wetherbeei_contig202:3576..3660 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig202 3577..3660 - |
| 1683186193.3453326-CDS-P-wetherbeei_contig202:3758..3923 | 1683186193.3453326-CDS-P-wetherbeei_contig202:3758..3923 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig202 3759..3923 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186193.3528438-UTR-P-wetherbeei_contig202:3923..3993 | 1683186193.3528438-UTR-P-wetherbeei_contig202:3923..3993 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig202 3924..3993 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig202.2.1 >prot_P-wetherbeei_contig202.2.1 ID=prot_P-wetherbeei_contig202.2.1|Name=mRNA_P-wetherbeei_contig202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=563bp
MTGSFEAPVSPSSSSLAQLDEEVAAFRLESQAVLSAGSPRVSTFGAQDDE
DHEPAGELDELEHELDLLESVNAALYNAVMSTKVMSARKVPSFHRRVLPG
GNLRLHSEDKTSQGPESSQQLEANLDASTRRLRLKVAELEVHKAQLAARG
KEERRSRRHRHHHSRSRADGTTDPADTVSAVAAAAVADPSPTGGSASTRS
VPTAHTRDAATAAAAVSARTGSWHHRSKERAAPAGISPLDGNSVSDPAAR
SAAEHLMRDAAAGRGDGGQRDRASSRVHSRDGNGHPAAATVLPEKTNRAV
ADLAAPTRPTQRQEERQEERRGAIRRVFLWRWRLAAAALRHLREEEKRAA
SAASALAAAADARQAARAAALRFLGRVLRLVARRRCAAALRTLAVTAREK
RTQEQLQQRLAAASVRQTTDRMSAGLRMVASVVHRLQEAALASAFAALRR
PAIAAASRRDAAVALARAFLRLLRDRRRRRFGQWRTAVLQCRAADRERAW
ASSSASASASASAAAATIEVAAGAATTLALQADLDRASARSAAAEEESPA
LLQEADSLRGAVA back to topmRNA from alignment at P-wetherbeei_contig202:1617..3993- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig202.2.1 ID=mRNA_P-wetherbeei_contig202.2.1|Name=mRNA_P-wetherbeei_contig202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2377bp|location=Sequence derived from alignment at P-wetherbeei_contig202:1617..3993- (Phaeothamnion wetherbeei SAG_119_79)
ACGCAAGATATTATTCTTGAATTTAAAAAGCGATGGCTTGTGTGCGTCAG
AGAAACATGCGACGTAGAGAATGACCGGCTCCTTCGAGGCTCCCGTGTCT
CCCTCCTCGTCGAGCCTCGCCCAGCTCGATGAGGAGGTCGCCGCCTTTCG
CCTCGAGTCGCAGGCCGTTCTCTCTGCGGGCAGCCCCCGCGTATCTACAT
TTGGCGCACAGGACGATGAGGACCACGAGCCCGCGGTGAGAGAGCGGCGC
CGATTGCCAGGCCGGGATCATTTTGCTGCCAGCTTCGTTCCACCCTCAAC
CTTCTCCTTGCTCTTTGCCCGCTCTGGCAGCAGGGAGAGCTGGACGAACT
GGAACACGAGCTTGACCTATTGGAAAGCGTCAACGCTGCTCTGTACAATG
CGGTCATGAGCACAAAGGTAAGAGTCTCAACATGCATAGAAAGCCACTTG
TACGCAGTTGCATTCTTTTAGACAAGGCACCCACGTAGCTTCATGGATTT
GCGAGCTGAAAGAGTGCTCTTTACGGGATGCCTTCGGCGAAATTTGCGGC
AAGAAATGCCTTATGAAAACGGTGTCTCCAGGTCTGCACCTAAATAATTT
CCGAGCCCTGTCGCCGTTCAACATCGTTGATCGGCGAGAACACTCTGCCC
GCTGCTGCTCTCCATATTTGTAGGTCATGTCGGCCCGCAAGGTGCCGTCA
TTCCACCGGCGGGTGTTGCCGGGAGGCAACCTCCGACTGCATTCGGAAGA
CAAGACGTCGCAGGGACCCGAAAGCAGCCAGGTGGGTTACGGAGAGGCGT
GTGCCTGAGCTGCTGGACTCAAAAAAGAGCAAACGCACAGCCTTTCGACT
TCGCAGCCCGGTTTTGTCTTGCCTTGTCCTTGTCATCTTGCACCACCTCC
TGGCACCACACAACTCCACCCATTTGTCCTGTTGCTTCGTTCGCTGCGAC
GCTCCCTTCTTCCTTTCCACCATTTGGCGTCGGTTGCGGCGATTCATTAA
CATCGAAACCGCTGGGATTCGCTGGGAACCGCTGTGAGCGAACAGCAACT
GGAGGCAAACCTCGACGCCAGCACGCGGCGCCTGCGGTTGAAAGTAGCGG
AGCTGGAAGTCCACAAGGCGCAGCTGGCGGCGCGCGGGAAGGAGGAGCGC
CGCAGCCGCCGACACCGCCATCATCACAGCCGCAGCCGCGCCGACGGTAC
CACCGATCCGGCTGATACGGTGTCCGCCGTGGCCGCTGCCGCTGTCGCTG
ACCCCTCACCCACTGGCGGAAGCGCTTCTACACGCAGCGTGCCGACTGCC
CACACCCGAGATGCCGCGACTGCAGCCGCCGCCGTCTCTGCTAGAACGGG
TTCCTGGCATCATCGCAGCAAGGAGCGCGCTGCTCCGGCAGGAATATCGC
CACTAGATGGCAACAGCGTTTCTGATCCCGCCGCCCGTTCTGCAGCGGAG
CATTTGATGAGAGACGCCGCGGCGGGAAGAGGAGACGGCGGCCAGAGAGA
TCGGGCCAGTAGCCGAGTGCACAGCAGAGATGGCAACGGCCACCCTGCAG
CAGCCACAGTACTTCCAGAGAAAACCAATCGGGCGGTGGCAGATCTGGCG
GCACCAACTCGGCCGACGCAGCGGCAGGAGGAGCGGCAGGAGGAGCGGCG
CGGCGCCATTCGGCGGGTCTTCCTATGGCGCTGGCGGCTGGCAGCTGCCG
CATTGCGGCACCTCCGCGAGGAAGAGAAACGCGCAGCGTCTGCCGCTTCG
GCGCTCGCAGCCGCCGCTGACGCCCGGCAAGCCGCCCGCGCCGCCGCGCT
TCGTTTCCTGGGGCGCGTCTTGCGTTTGGTCGCCCGGCGGCGCTGCGCGG
CGGCGTTGCGGACGCTGGCGGTGACGGCACGGGAGAAGCGAACGCAGGAG
CAGCTGCAGCAGCGGCTCGCGGCAGCGTCGGTGCGGCAAACAACCGACCG
GATGTCCGCTGGGCTCCGGATGGTAGCCTCAGTGGTCCATCGCCTCCAAG
AAGCTGCGTTGGCGTCGGCTTTCGCCGCCCTTCGAAGGCCCGCCATCGCC
GCTGCGAGTCGGCGGGACGCGGCGGTGGCGCTGGCACGTGCCTTCCTCCG
GCTGCTGCGGGACCGGCGGCGGCGCCGCTTCGGGCAGTGGCGGACGGCCG
TCCTGCAATGCCGCGCCGCCGACCGCGAACGGGCGTGGGCGTCGTCGTCG
GCGTCTGCGTCGGCGTCTGCGTCGGCGGCGGCTGCGACAATCGAGGTGGC
AGCAGGGGCGGCAACAACGTTGGCACTGCAAGCCGACCTCGATCGCGCGT
CCGCTCGCTCCGCTGCGGCGGAGGAGGAGAGCCCCGCGCTGCTGCAGGAG
GCGGACAGCCTGCGAGGGGCGGTGGCC back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig202:1617..3993- >mRNA_P-wetherbeei_contig202.2.1 ID=mRNA_P-wetherbeei_contig202.2.1|Name=mRNA_P-wetherbeei_contig202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1689bp|location=Sequence derived from alignment at P-wetherbeei_contig202:1617..3993- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCTCCTTCGAGGCTCCCGTGTCTCCCTCCTCGTCGAGCCTCGC
CCAGCTCGATGAGGAGGTCGCCGCCTTTCGCCTCGAGTCGCAGGCCGTTC
TCTCTGCGGGCAGCCCCCGCGTATCTACATTTGGCGCACAGGACGATGAG
GACCACGAGCCCGCGGGAGAGCTGGACGAACTGGAACACGAGCTTGACCT
ATTGGAAAGCGTCAACGCTGCTCTGTACAATGCGGTCATGAGCACAAAGG
TCATGTCGGCCCGCAAGGTGCCGTCATTCCACCGGCGGGTGTTGCCGGGA
GGCAACCTCCGACTGCATTCGGAAGACAAGACGTCGCAGGGACCCGAAAG
CAGCCAGCAACTGGAGGCAAACCTCGACGCCAGCACGCGGCGCCTGCGGT
TGAAAGTAGCGGAGCTGGAAGTCCACAAGGCGCAGCTGGCGGCGCGCGGG
AAGGAGGAGCGCCGCAGCCGCCGACACCGCCATCATCACAGCCGCAGCCG
CGCCGACGGTACCACCGATCCGGCTGATACGGTGTCCGCCGTGGCCGCTG
CCGCTGTCGCTGACCCCTCACCCACTGGCGGAAGCGCTTCTACACGCAGC
GTGCCGACTGCCCACACCCGAGATGCCGCGACTGCAGCCGCCGCCGTCTC
TGCTAGAACGGGTTCCTGGCATCATCGCAGCAAGGAGCGCGCTGCTCCGG
CAGGAATATCGCCACTAGATGGCAACAGCGTTTCTGATCCCGCCGCCCGT
TCTGCAGCGGAGCATTTGATGAGAGACGCCGCGGCGGGAAGAGGAGACGG
CGGCCAGAGAGATCGGGCCAGTAGCCGAGTGCACAGCAGAGATGGCAACG
GCCACCCTGCAGCAGCCACAGTACTTCCAGAGAAAACCAATCGGGCGGTG
GCAGATCTGGCGGCACCAACTCGGCCGACGCAGCGGCAGGAGGAGCGGCA
GGAGGAGCGGCGCGGCGCCATTCGGCGGGTCTTCCTATGGCGCTGGCGGC
TGGCAGCTGCCGCATTGCGGCACCTCCGCGAGGAAGAGAAACGCGCAGCG
TCTGCCGCTTCGGCGCTCGCAGCCGCCGCTGACGCCCGGCAAGCCGCCCG
CGCCGCCGCGCTTCGTTTCCTGGGGCGCGTCTTGCGTTTGGTCGCCCGGC
GGCGCTGCGCGGCGGCGTTGCGGACGCTGGCGGTGACGGCACGGGAGAAG
CGAACGCAGGAGCAGCTGCAGCAGCGGCTCGCGGCAGCGTCGGTGCGGCA
AACAACCGACCGGATGTCCGCTGGGCTCCGGATGGTAGCCTCAGTGGTCC
ATCGCCTCCAAGAAGCTGCGTTGGCGTCGGCTTTCGCCGCCCTTCGAAGG
CCCGCCATCGCCGCTGCGAGTCGGCGGGACGCGGCGGTGGCGCTGGCACG
TGCCTTCCTCCGGCTGCTGCGGGACCGGCGGCGGCGCCGCTTCGGGCAGT
GGCGGACGGCCGTCCTGCAATGCCGCGCCGCCGACCGCGAACGGGCGTGG
GCGTCGTCGTCGGCGTCTGCGTCGGCGTCTGCGTCGGCGGCGGCTGCGAC
AATCGAGGTGGCAGCAGGGGCGGCAACAACGTTGGCACTGCAAGCCGACC
TCGATCGCGCGTCCGCTCGCTCCGCTGCGGCGGAGGAGGAGAGCCCCGCG
CTGCTGCAGGAGGCGGACAGCCTGCGAGGGGCGGTGGCC back to top
|