mRNA_P-wetherbeei_contig20187.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20187.1.1
Unique NamemRNA_P-wetherbeei_contig20187.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20187.1.1 vs. uniprot
Match: A0A355TT59_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TT59_9BACT)

HSP 1 Score: 182 bits (463), Expect = 3.170e-53
Identity = 98/252 (38.89%), Postives = 153/252 (60.71%), Query Frame = 1
Query:    1 GKMAGPVELGSDYGRAVAALGTASRIQPTASDPNTKLYYHKD--LFVLVGTENKIIGITIVSPAYRTADGLGVGSLEHEIMKRLGQGLMRGQGNRTYANRGIGFSFDATGKATQVYIFRAEGDRPLLGDRLLVAGQRVGDVRLGMRFSLIEKAWGPPSKSKDMGNGEMLCSYPTNAVRIIVHDG-IVDGILVTTGDYVTPQGLKVGVSGVGVQKVLGQSMHKLKNG-LFYPQLGIGFVTESNQVTEIQILYP 744
            G+  G V LG +  +  + LG  S++  + +DPN++L + K+  L V +G+   +IGIT++   ++T +G+G+GS    + K  GQGL RGQGN  YA+RG+ FS    GK + +Y+F+ E +RPLLGDR++V G+RVG +++G   S +  +WG       MG G  L  Y   A+ +IV+   I++G+++ TGD++T +G+KVG S   V KV GQ+     NG L Y   GIGF     +V++I +L P
Sbjct:   35 GRSVGSVCLGQNINQVRSILGAPSKVVASPNDPNSQLLHFKNHGLAVFMGSNGAVIGITVLGGKWKTPEGIGIGSAGASVTKVYGQGLQRGQGNINYASRGLAFSI-RNGKVSSIYVFKREDERPLLGDRIIVPGKRVGSIKIGTHLSTVSNSWGNADNVTPMGQGRSLHRYKEEAIGLIVNSKQIIEGVVMETGDFITKEGVKVGSSKSEVIKVFGQA--NASNGSLIYENKGIGFRLTQGRVSQITVLSP 283          
BLAST of mRNA_P-wetherbeei_contig20187.1.1 vs. uniprot
Match: A0A7X8Y1N6_9BURK (Uncharacterized protein (Fragment) n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8Y1N6_9BURK)

HSP 1 Score: 163 bits (413), Expect = 1.140e-45
Identity = 87/244 (35.66%), Postives = 144/244 (59.02%), Query Frame = 1
Query:    1 GKMAGPVELGSDYGRAVAALGTASRIQPTASDPNTKL--YYHKDLFVLVGTENKIIGITIVSPAYRTADGLGVGSLEHEIMKRLGQGLMRGQGNRTYANRGIGFSFDATGKATQVYIFRAEGDRPLLGDRLLVAGQRVGDVRLGMRFSLIEKAWGPPSKSKDMGNG--EMLCSYPTNAVRIIVHDGIVDGILVTTGDYVTPQGLKVGVSGVGVQKVLGQSMHKLKNGLFYPQLGIGFVTESNQV 720
            G+  G V LG   G    ALG  +R+  + +DPN+KL  Y  + + V +G+   +IG+ +   +++T +G+ VG+ + ++ K  G+GL+RG+GN TY +RG+ FSF   GK   +Y+F+ E  R L+GDRL+  G+RVG + LG   S +E+AWG   +   +G G  E L S+   AV ++V  G + G+++ TGD++T +G+KVG +   V +  G +       ++Y   GIGF  + ++V
Sbjct:   51 GQGVGAVRLGQTLGELRKALGPPARVTASPNDPNSKLLDYPKRGISVFLGSSGGVIGVVVRGRSWQTPEGIAVGTSQGQVTKLFGKGLVRGEGNLTYPDRGLAFSF-RNGKVHTIYVFQREESRALMGDRLIEPGRRVGQILLGDPVSRVEEAWGRADRVLPLGQGGQEKLYSFKEEAVGVVVLAGRIQGVILETGDFITREGVKVGSTRAEVLRAFGTTFRSEPGRIWYDVRGIGFWFQGDRV 293          
BLAST of mRNA_P-wetherbeei_contig20187.1.1 vs. uniprot
Match: A0A7Z9PVH7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PVH7_9BACT)

HSP 1 Score: 147 bits (372), Expect = 1.230e-39
Identity = 91/251 (36.25%), Postives = 133/251 (52.99%), Query Frame = 1
Query:    1 GKMAGPVELGSDYGRAVAALGTASRIQPTASDPNTK--LYYHKDLFVLVGTENKIIGITIVSPAYRTADGLGVGSLEHEIMKRLGQGLMRGQGNRTYANRGIGFSFDATGKATQVYIFRAEGDRPLLGDRLLVAGQRVGDVRLGMRFSLIEKAWGPPSKSKDMGNGEMLCSYPTNAVRIIVHDGIVDGILVTTGDYVTPQGLKVGVSGVGVQKVLGQSMHKLKNGLFYPQLGIGFVTESNQVTEIQILYPR 747
            G+ AGP  LGS +   +  LG  +   P+A DP TK  LY    L  LV  E+K+IGIT+V   ++TA GLGVGS      +  G+GL RGQG   +   GI  ++   G    +YI + +   P+ GD L+V G R G +R+G     + K  GPPS  +  G  + +  YP   +R+    G +  + VT+GD+VTP GLKVG     ++K LG      ++ +FY + GIG   + + + EI I  P+
Sbjct:   34 GEQAGPFRLGSSFQTVLQRLGAPNSDNPSAGDPGTKMKLYPKHQLGFLVNPESKVIGITVVRKDWKTARGLGVGSPVVAFQEVYGRGLKRGQGQLAFPQHGIALTYTG-GTVQTIYIVKKDAVDPVKGDHLVVGGTRAGQLRIGRTSDDLLKLLGPPSSKE--GAQKNIWVYPDRGIRLGFIQGRLHLVGVTSGDWVTPSGLKVGRPFSEMKKELGSDYRVERSSVFYDKWGIGARLQGDMLVEILIFNPK 281          
BLAST of mRNA_P-wetherbeei_contig20187.1.1 vs. uniprot
Match: X1VRM2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1VRM2_9ZZZZ)

HSP 1 Score: 53.5 bits (127), Expect = 7.720e-5
Identity = 49/216 (22.69%), Postives = 90/216 (41.67%), Query Frame = 1
Query:  148 ENKIIGITIVSPAYRTADGLGVGSLEHEIMKRLGQGLMRGQGN----RTYANRGIGFSFDATGKAT-QVYIFRAEGDRPL-----LGDRLLVAGQRVGDVRLGMRFSLIEKAWGPPS------KSKDMGNGEMLCSYPTNAVRIIVHDGIVDGILVTTGDYVTPQGLKVGVSGVGVQKVLGQSMH----KLKNGLFYPQLGIGFVTESNQVTEIQI 735
            ++ +  IT++SP+Y+ A+GLGVG  E +I +  G      +        Y ++G+ F  +   +   ++ +   +  +       +  +++V G RVGD    M    I ++ G P           + N       P   +  ++ +G+V GI   +  Y    GL+VG S   ++K  G        K K+ L Y   G+ F       T ++I
Sbjct:   35 DDSVKEITVLSPSYKFANGLGVGDSERKIKQVFGDDFQLKETEWKDFLAYKDKGLVFEINKQDRTVMEINVSPIDSSKSYKKAADIVSKIIVPGIRVGDYTFNMSKDDILESLGKPGGIFYGDNKYTLDNLPEKYYMPYEDISFLIVNGLVKGITALSPSYKLTNGLRVGDSEQKIKKAFGDDFKIKESKWKDYLSYKDEGLMFEINKQDRTVMEI 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20187.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A355TT59_9BACT3.170e-5338.89Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A7X8Y1N6_9BURK1.140e-4535.66Uncharacterized protein (Fragment) n=2 Tax=Burkhol... [more]
A0A7Z9PVH7_9BACT1.230e-3936.25Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
X1VRM2_9ZZZZ7.720e-522.69Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20187contigP-wetherbeei_contig20187:479..1228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size750
Hectar predicted targeting categoryother localisation
Exons1
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.9517124-CDS-P-wetherbeei_contig20187:478..12221683186192.9517124-CDS-P-wetherbeei_contig20187:478..1222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20187 479..1222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.961794-UTR-P-wetherbeei_contig20187:1222..12281683186192.961794-UTR-P-wetherbeei_contig20187:1222..1228Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20187 1223..1228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20187.1.1prot_P-wetherbeei_contig20187.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20187 479..1222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20187.1.1

>prot_P-wetherbeei_contig20187.1.1 ID=prot_P-wetherbeei_contig20187.1.1|Name=mRNA_P-wetherbeei_contig20187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MAGPVELGSDYGRAVAALGTASRIQPTASDPNTKLYYHKDLFVLVGTENK
IIGITIVSPAYRTADGLGVGSLEHEIMKRLGQGLMRGQGNRTYANRGIGF
SFDATGKATQVYIFRAEGDRPLLGDRLLVAGQRVGDVRLGMRFSLIEKAW
GPPSKSKDMGNGEMLCSYPTNAVRIIVHDGIVDGILVTTGDYVTPQGLKV
GVSGVGVQKVLGQSMHKLKNGLFYPQLGIGFVTESNQVTEIQILYPR*
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mRNA from alignment at P-wetherbeei_contig20187:479..1228-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20187.1.1 ID=mRNA_P-wetherbeei_contig20187.1.1|Name=mRNA_P-wetherbeei_contig20187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig20187:479..1228- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGATGGCCGGGCCCGTCGAGCTCGGCAGCGATTACGGACGGGCGGT GGCGGCTCTGGGAACGGCTTCTCGCATTCAGCCAACCGCCAGCGATCCCA ACACCAAACTTTACTATCATAAAGACCTCTTCGTGCTGGTCGGCACCGAG AACAAAATCATCGGTATCACGATCGTTTCCCCAGCCTATCGGACTGCTGA CGGGCTCGGAGTGGGCAGCCTGGAACACGAGATTATGAAACGTCTCGGGC AAGGCTTGATGCGGGGCCAGGGGAATCGCACGTATGCCAATCGAGGCATC GGATTTTCTTTCGACGCGACCGGCAAGGCTACTCAAGTCTACATCTTCCG GGCCGAGGGGGATCGGCCGCTGCTCGGTGACCGGCTTCTGGTCGCCGGCC AGCGCGTGGGCGACGTGCGTCTGGGGATGCGCTTCTCCCTTATCGAAAAA GCCTGGGGCCCGCCCAGCAAATCCAAAGATATGGGCAACGGGGAAATGCT TTGCAGCTATCCCACCAACGCCGTCCGAATTATCGTTCACGACGGCATCG TCGACGGCATCCTGGTCACCACCGGTGACTATGTCACTCCCCAGGGCCTC AAAGTTGGGGTATCTGGCGTCGGTGTGCAGAAAGTGCTCGGACAAAGCAT GCACAAATTGAAAAACGGACTCTTCTATCCTCAACTCGGCATCGGCTTCG TCACAGAATCCAACCAGGTGACCGAAATTCAGATCCTTTACCCTCGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20187:479..1228-

>mRNA_P-wetherbeei_contig20187.1.1 ID=mRNA_P-wetherbeei_contig20187.1.1|Name=mRNA_P-wetherbeei_contig20187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig20187:479..1228- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGGCCCGTCGAGCTCGGCAGCGATTACGGACGGGCGGTGGCGGC
TCTGGGAACGGCTTCTCGCATTCAGCCAACCGCCAGCGATCCCAACACCA
AACTTTACTATCATAAAGACCTCTTCGTGCTGGTCGGCACCGAGAACAAA
ATCATCGGTATCACGATCGTTTCCCCAGCCTATCGGACTGCTGACGGGCT
CGGAGTGGGCAGCCTGGAACACGAGATTATGAAACGTCTCGGGCAAGGCT
TGATGCGGGGCCAGGGGAATCGCACGTATGCCAATCGAGGCATCGGATTT
TCTTTCGACGCGACCGGCAAGGCTACTCAAGTCTACATCTTCCGGGCCGA
GGGGGATCGGCCGCTGCTCGGTGACCGGCTTCTGGTCGCCGGCCAGCGCG
TGGGCGACGTGCGTCTGGGGATGCGCTTCTCCCTTATCGAAAAAGCCTGG
GGCCCGCCCAGCAAATCCAAAGATATGGGCAACGGGGAAATGCTTTGCAG
CTATCCCACCAACGCCGTCCGAATTATCGTTCACGACGGCATCGTCGACG
GCATCCTGGTCACCACCGGTGACTATGTCACTCCCCAGGGCCTCAAAGTT
GGGGTATCTGGCGTCGGTGTGCAGAAAGTGCTCGGACAAAGCATGCACAA
ATTGAAAAACGGACTCTTCTATCCTCAACTCGGCATCGGCTTCGTCACAG
AATCCAACCAGGTGACCGAAATTCAGATCCTTTACCCTCGCTAA
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