mRNA_P-wetherbeei_contig2018.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2018.6.1
Unique NamemRNA_P-wetherbeei_contig2018.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2018.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2018contigP-wetherbeei_contig2018:3916..5051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size842
Hectar predicted targeting categoryother localisation
Exons3
Cds size702
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.8124094-UTR-P-wetherbeei_contig2018:3915..40341683186192.8124094-UTR-P-wetherbeei_contig2018:3915..4034Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2018 3916..4034 -
1683186192.8467479-UTR-P-wetherbeei_contig2018:5030..50511683186192.8467479-UTR-P-wetherbeei_contig2018:5030..5051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2018 5031..5051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.8212476-CDS-P-wetherbeei_contig2018:4034..43671683186192.8212476-CDS-P-wetherbeei_contig2018:4034..4367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2018 4035..4367 -
1683186192.8299582-CDS-P-wetherbeei_contig2018:4469..45051683186192.8299582-CDS-P-wetherbeei_contig2018:4469..4505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2018 4470..4505 -
1683186192.8384585-CDS-P-wetherbeei_contig2018:4697..50301683186192.8384585-CDS-P-wetherbeei_contig2018:4697..5030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2018 4698..5030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2018.6.1prot_P-wetherbeei_contig2018.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2018 4035..5030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2018.6.1

>prot_P-wetherbeei_contig2018.6.1 ID=prot_P-wetherbeei_contig2018.6.1|Name=mRNA_P-wetherbeei_contig2018.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
MLGSSQEANELSALVALRRGQGVPMMESINNWEVVVISDQKKGLIAALAE
KFLRTHHQHCAKHLEHNICAIFRHHNLARAGLWAAVGAGWRERQATRSST
PCARRSRKPAPLTCGCRLRQVYDVPQLARALVTELAGERRQRAVEEAEWV
IVGNIIAPPIMAPYNEQAELARSYQVAQNGDFTAQVVHVGDPDALGGSAP
ASSTLSSNATAPTRSSGSYHAATSFRRRSSAGS*
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mRNA from alignment at P-wetherbeei_contig2018:3916..5051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2018.6.1 ID=mRNA_P-wetherbeei_contig2018.6.1|Name=mRNA_P-wetherbeei_contig2018.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1136bp|location=Sequence derived from alignment at P-wetherbeei_contig2018:3916..5051- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCGTGAAGATATTTGTCATGCTAGGCTCGTCACAGGAGGCAAATGA
ATTGTCAGCGTTGGTGGCTCTTCGGCGAGGTCAAGGAGTGCCAATGATGG
AATCCATCAACAACTGGGAGGTCGTCGTAATCAGCGACCAAAAAAAGGGC
CTGATCGCTGCCCTCGCCGAGAAGTTTCTGAGGACGCACCACCAGCACTG
TGCTAAGCACCTCGAGCACAACATCTGCGCTATCTTCCGCCACCACAACC
TCGCTCGGGCAGGACTGTGGGCTGCTGTGGGCGCTGGCTGGCGCGAGCGA
CAAGCGACCAGGAGTTCGACACCGTGCGCGAGAAGATCAAGGAAGCCAGC
GCCGGTTAGTTCTGTGTTTAGAACAAATGGAGAGCTTTGGTAGTTTTGGC
ATGAATTTTGTCACGTTTCCAAGTGCATGTCCTTCCCGCTGAGCGTGTTC
TGTTTCCAGGCTCTCCTACGGCCTTCCAGCTGTTGGCAGCCAGCCGCTTC
TAATCATACCGCTGTCCTTATATTTCCCACCTGTCAGCGGCCGCAGCTTA
CTTGCGGATGCCGGCTTCGACAAGTTTACGATGCTTTCGAATGTCAAGGC
GGGGGGCGGTCGCTGTACAATACTTTGGCGTCCAGCTTCGTCAAGTCCGC
CAACACGAAGTACGGAGAAATCCGGGAAGTGCAGGTTCCGCAGCTGGCGC
GGGCCTTGGTGACCGAACTCGCCGGAGAACGCCGCCAGCGGGCTGTGGAG
GAAGCTGAGTGGGTGATCGTGGGCAATATCATTGCGCCGCCCATCATGGC
TCCCTACAACGAGCAGGCGGAGCTCGCCAGGAGCTACCAGGTGGCGCAGA
ACGGGGATTTCACGGCGCAGGTGGTGCACGTGGGCGATCCTGATGCGCTG
GGAGGCAGCGCACCGGCCAGCTCAACCCTGTCGTCGAATGCGACTGCGCC
TACCCGCAGCAGCGGAAGTTACCATGCCGCCACGTCATTTAGGCGGCGCA
GCAGCGCTGGAAGTTAGCCTCCTCACCGACACGCAGGCTTGGTTCAGCGA
CAAGTACTTTGCCAACTTCCACCGGTCCGGGACCATCCGGGAAGCCTACT
CCCAACAAATCAACCTGCCATCGCGTGGCCAGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2018:3916..5051-

>mRNA_P-wetherbeei_contig2018.6.1 ID=mRNA_P-wetherbeei_contig2018.6.1|Name=mRNA_P-wetherbeei_contig2018.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig2018:3916..5051- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTAGGCTCGTCACAGGAGGCAAATGAATTGTCAGCGTTGGTGGCTCT
TCGGCGAGGTCAAGGAGTGCCAATGATGGAATCCATCAACAACTGGGAGG
TCGTCGTAATCAGCGACCAAAAAAAGGGCCTGATCGCTGCCCTCGCCGAG
AAGTTTCTGAGGACGCACCACCAGCACTGTGCTAAGCACCTCGAGCACAA
CATCTGCGCTATCTTCCGCCACCACAACCTCGCTCGGGCAGGACTGTGGG
CTGCTGTGGGCGCTGGCTGGCGCGAGCGACAAGCGACCAGGAGTTCGACA
CCGTGCGCGAGAAGATCAAGGAAGCCAGCGCCGCTTACTTGCGGATGCCG
GCTTCGACAAGTTTACGATGTTCCGCAGCTGGCGCGGGCCTTGGTGACCG
AACTCGCCGGAGAACGCCGCCAGCGGGCTGTGGAGGAAGCTGAGTGGGTG
ATCGTGGGCAATATCATTGCGCCGCCCATCATGGCTCCCTACAACGAGCA
GGCGGAGCTCGCCAGGAGCTACCAGGTGGCGCAGAACGGGGATTTCACGG
CGCAGGTGGTGCACGTGGGCGATCCTGATGCGCTGGGAGGCAGCGCACCG
GCCAGCTCAACCCTGTCGTCGAATGCGACTGCGCCTACCCGCAGCAGCGG
AAGTTACCATGCCGCCACGTCATTTAGGCGGCGCAGCAGCGCTGGAAGTT
AG
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